RLG00000025325

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002189
Physical Location & Seq
Reverse (-)
44688125 .. 44691471
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025325

Sequence Viewer

Length: 708 bp
ATGAACGCTAGCTGCTTTGTGTTTGAGAAGTGTGGAAGTAATTATGTTTTGGATATGACTACTCTAACTATTATGAGGGCTCTTCCAAGAGAGGCTTGTCTAGGCGAGTTAAAGAAGGCAGCTAATATCATTGTTATCTATGGAAAGACCGGAGAGCAGAAGTTTGTGTTGGGACATCTCATTCCTGGCCAAATCCCACAGTTGTCATTTGATTTGGTCTTTGATGATGAGTTTGAACTATCCCACAACTGGAAAAGTGATTTTGTGCCTGATGCCATTAGTTCTGTAGGGTATCGAGTATTTCTGGGGCACAAACAATACTTCGTTTCTTCAGACGTAGGTGTAAGAAAGATCAATGGTATGTATTTCACAAGGAACCAGCTGGTGGTGCTGGTGCCCCCAATGCCAAATTTGGGTCAAGGGGGATGCATGGCCATTGAGGATGGTTATCAACTTGCAGTGGATCTTGAAAAAGCTCTGAAGAAAAGCAGTGAACTGGGAACTCCTCCGGACATTGCTGCTTCTTTAAGAAGCTATGAGACATCTAGAAAACAGCGGGTTGTCATTATTCATGGAATGGCTAGAATGGCTGCAATTATGGCTTCAACTTACAAGGCTTATCTGCATGTAGGACTTGGTCCATTATCGATTTGGTCTAAGCTTCAAAGAGTACGTACATCTTGCAAACTCTCATTGAAGGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
FAD_binding_3 FHA NAD_binding_8

Protein Analysis

236

Amino Acids

26.08

Weight (kDa)

9.15

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 31 - 86 8.2e-06 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 394
AccB7I CCANNNNNTGG 1 cut(s) 385
AccIII TCCGGA 1 cut(s) 508
AciI CCGC 1 cut(s) 556
AclWI GGATC 1 cut(s) 471
AcoI YGGCCR 2 cut(s) 187, 432
AcsI RAATTY 1 cut(s) 409
AcuI CTGAAG 2 cut(s) 315, 500
AfaI GTAC 2 cut(s) 672, 676
AfiI CCNNNNNNNGG 3 cut(s) 249, 385, 413
AgsI TTSAA 5 cut(s) 236, 470, 606, 665, 697
AjnI CCWGG 1 cut(s) 184
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 6 cut(s) 12, 122, 382, 476, 534, 661
AluI AGCT 6 cut(s) 12, 122, 382, 476, 534, 661
Alw26I GTCTC 1 cut(s) 533
AlwI GGATC 1 cut(s) 471
Aor13HI TCCGGA 1 cut(s) 508
AoxI GGCC 2 cut(s) 187, 432
ApeKI GCWGC 4 cut(s) 12, 119, 518, 590
ApoI RAATTY 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 638
AsuNHI GCTAGC 1 cut(s) 8
AvaII GGWCC 1 cut(s) 638
BaeGI GKGCMC 2 cut(s) 312, 399
BalI TGGCCA 2 cut(s) 189, 434
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 131, 505, 577
BccI CCATC 1 cut(s) 437
BciT130I CCWGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 533
BfaI CTAG 4 cut(s) 9, 101, 546, 582
BfmI CTRYAG 1 cut(s) 285
BisI GCNGC 4 cut(s) 13, 120, 519, 591
BlsI GCNGC 4 cut(s) 14, 121, 520, 592
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 638
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 2 cut(s) 377, 396
BmrFI CCNGG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 506
BmsI GCATC 2 cut(s) 262, 416
BmtI GCTAGC 1 cut(s) 12
BmuI ACTGGG 1 cut(s) 506
Bsa29I ATCGAT 1 cut(s) 647
BsaAI YACGTR 1 cut(s) 674
BsaBI GATNNNNATC 1 cut(s) 447
BsaWI WCCGGW 2 cut(s) 149, 508
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 385, 413
Bse1I ACTGG 2 cut(s) 254, 501
Bse3DI GCAATG 1 cut(s) 513
Bse8I GATNNNNATC 1 cut(s) 447
BseAI TCCGGA 1 cut(s) 508
BseBI CCWGG 1 cut(s) 186
BseCI ATCGAT 1 cut(s) 647
BseGI GGATG 2 cut(s) 431, 448
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 3 cut(s) 249, 385, 413
BseMI GCAATG 1 cut(s) 513
BseNI ACTGG 2 cut(s) 254, 501
BseRI GAGGAG 1 cut(s) 495
BseSI GKGCMC 2 cut(s) 312, 399
BseXI GCAGC 3 cut(s) 131, 505, 577
BshFI GGCC 2 cut(s) 189, 434
BshNI GGYRCC 1 cut(s) 394
BshVI ATCGAT 1 cut(s) 647
BsiSI CCGG 2 cut(s) 150, 509
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 3 cut(s) 249, 385, 413
BsmAI GTCTC 1 cut(s) 533
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 2 cut(s) 189, 434
Bsp1286I GDGCHC 3 cut(s) 82, 312, 399
Bsp13I TCCGGA 1 cut(s) 508
Bsp143I GATC 2 cut(s) 351, 463
BspACI CCGC 1 cut(s) 556
BspANI GGCC 2 cut(s) 189, 434
BspDI ATCGAT 1 cut(s) 647
BspEI TCCGGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 377, 396
BspOI GCTAGC 1 cut(s) 12
BspPI GGATC 1 cut(s) 471
BspQI GCTCTTC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 513
BsrI ACTGG 2 cut(s) 254, 501
BssMI GATC 2 cut(s) 351, 463
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 657
BstF5I GGATG 2 cut(s) 431, 448
BstKTI GATC 2 cut(s) 354, 466
BstMAI GTCTC 1 cut(s) 533
BstMBI GATC 2 cut(s) 351, 463
BstMWI GCNNNNNNNGC 4 cut(s) 388, 403, 587, 599
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 629
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 285
BstSLI GKGCMC 2 cut(s) 312, 399
BstSNI TACGTA 1 cut(s) 674
BstV1I GCAGC 3 cut(s) 131, 505, 577
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
Bsu15I ATCGAT 1 cut(s) 647
BsuRI GGCC 2 cut(s) 189, 434
BsuTUI ATCGAT 1 cut(s) 647
BtsCI GGATG 2 cut(s) 431, 448
BtsI GCAGTG 2 cut(s) 465, 496
BtsIMutI CAGTG 2 cut(s) 465, 496
Cac8I GCNNGC 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 638
ClaI ATCGAT 1 cut(s) 647
Csp6I GTAC 2 cut(s) 671, 675
CviAII CATG 3 cut(s) 430, 572, 626
CviQI GTAC 2 cut(s) 671, 675
DdeI CTNAG 1 cut(s) 657
DpnI GATC 2 cut(s) 353, 465
DpnII GATC 2 cut(s) 351, 463
EaeI YGGCCR 2 cut(s) 187, 432
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco105I TACGTA 1 cut(s) 674
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 638
Eco57I CTGAAG 2 cut(s) 315, 500
EcoRII CCWGG 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 431
EcoT38I GRGCYC 1 cut(s) 82
FaeI CATG 3 cut(s) 433, 575, 629
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FaqI GGGAC 1 cut(s) 186
FatI CATG 3 cut(s) 429, 571, 625
FauI CCCGC 1 cut(s) 549
Fnu4HI GCNGC 4 cut(s) 13, 120, 519, 591
FokI GGATG 2 cut(s) 438, 455
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 4 cut(s) 13, 120, 519, 591
FspBI CTAG 4 cut(s) 9, 101, 546, 582
GluI GCNGC 4 cut(s) 13, 120, 519, 591
HaeIII GGCC 2 cut(s) 189, 434
HapII CCGG 2 cut(s) 150, 509
Hin1II CATG 3 cut(s) 433, 575, 629
HindIII AAGCTT 1 cut(s) 659
HpaII CCGG 2 cut(s) 150, 509
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 2 cut(s) 334, 480
Hpy188III TCNNGA 3 cut(s) 467, 509, 546
Hpy8I GTNNAC 1 cut(s) 494
HpyAV CCTTC 2 cut(s) 109, 691
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4IV ACGT 2 cut(s) 336, 673
HpyCH4V TGCA 5 cut(s) 429, 458, 593, 625, 684
HpyF10VI GCNNNNNNNGC 4 cut(s) 388, 403, 587, 599
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 2 cut(s) 336, 673
Hsp92II CATG 3 cut(s) 433, 575, 629
Kpn2I TCCGGA 1 cut(s) 508
Kzo9I GATC 2 cut(s) 351, 463
LguI GCTCTTC 1 cut(s) 87
Lsp1109I GCAGC 3 cut(s) 131, 505, 577
LweI GCATC 2 cut(s) 262, 416
MaeI CTAG 4 cut(s) 9, 101, 546, 582
MaeII ACGT 2 cut(s) 336, 673
MalI GATC 2 cut(s) 353, 465
MboI GATC 2 cut(s) 351, 463
MboII GAAGA 3 cut(s) 74, 321, 493
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 3 cut(s) 82, 312, 399
MlsI TGGCCA 2 cut(s) 189, 434
MluCI AATT 3 cut(s) 40, 409, 594
MluNI TGGCCA 2 cut(s) 189, 434
MnlI CCTC 4 cut(s) 69, 85, 433, 516
Mox20I TGGCCA 2 cut(s) 189, 434
Mph1103I ATGCAT 1 cut(s) 431
MroI TCCGGA 1 cut(s) 508
MscI TGGCCA 2 cut(s) 189, 434
MseI TTAA 2 cut(s) 110, 527
Msp20I TGGCCA 2 cut(s) 189, 434
MspA1I CMGCKG 2 cut(s) 382, 556
MspI CCGG 2 cut(s) 150, 509
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 4 cut(s) 388, 403, 587, 599
NdeII GATC 2 cut(s) 351, 463
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 3 cut(s) 433, 575, 629
NlaIV GGNNCC 2 cut(s) 377, 396
NsiI ATGCAT 1 cut(s) 431
NspI RCATGY 1 cut(s) 629
PciSI GCTCTTC 1 cut(s) 87
PflFI GACNNNGTC 1 cut(s) 636
PflMI CCANNNNNTGG 1 cut(s) 385
PkrI GCNGC 4 cut(s) 14, 121, 520, 592
Ppu21I YACGTR 1 cut(s) 674
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 377, 396
PspPI GGNCC 1 cut(s) 638
PsuI RGATCY 1 cut(s) 463
PsyI GACNNNGTC 1 cut(s) 636
PvuII CAGCTG 1 cut(s) 382
RsaI GTAC 2 cut(s) 672, 676
RsaNI GTAC 2 cut(s) 671, 675
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 110, 527
SatI GCNGC 4 cut(s) 13, 120, 519, 591
Sau3AI GATC 2 cut(s) 351, 463
Sau96I GGNCC 1 cut(s) 638
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 3 cut(s) 82, 312, 399
SetI ASST 9 cut(s) 14, 124, 339, 343, 384, 478, 536, 663, 676
SfaNI GCATC 2 cut(s) 262, 416
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 638
SnaBI TACGTA 1 cut(s) 674
Sse9I AATT 3 cut(s) 40, 409, 594
SsiI CCGC 1 cut(s) 556
SspMI CTAG 4 cut(s) 9, 101, 546, 582
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 201
TaiI ACGT 2 cut(s) 339, 676
TaqI TCGA 2 cut(s) 295, 647
TasI AATT 3 cut(s) 40, 409, 594
Tru1I TTAA 2 cut(s) 110, 527
Tru9I TTAA 2 cut(s) 110, 527
TscAI CASTG 2 cut(s) 465, 496
TseI GCWGC 4 cut(s) 12, 119, 518, 590
TspDTI ATGAA 2 cut(s) 17, 560
TspRI CASTG 2 cut(s) 465, 496
Tth111I GACNNNGTC 1 cut(s) 636
Van91I CCANNNNNTGG 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 638
XapI RAATTY 1 cut(s) 409
XbaI TCTAGA 1 cut(s) 545
XceI RCATGY 1 cut(s) 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 648
XspI CTAG 4 cut(s) 9, 101, 546, 582
Zsp2I ATGCAT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.