FvH4_3g29940

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002189
Physical Location & Seq
Forward (+)
23065587 .. 23068918
3332 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29940.t3

Sequence Viewer

Length: 855 bp
ATGAAGGTGAAGCCAGACCTTGGCAATGTGGTGCATTTGTCACAGGCTTGTCTAGGCGAGGCAAAGAAGGCAGCTGACAGTGTTGTCATCTATGGAAAGGCCAAAGAGCAGAAGCTTGTGTTGGGACATCTTATTCCTAGCCAAATCCCTCAGTTGTCATTTGATTTGGTCTTTGACGAGGAGTTTGAGCTCTCCCACAACTGGAAAAACGGCAGTGTCCACTTTGCTGGTTATCAATCTGTGATGGGTGATGATGATGATAATTCGAGTGAGTATGATTCTTCAGATTCAGAAGAAGAGGAGGAAGAACTCCCAGTGATTGCTACAGAAAATGGAAAAGTTGAAAATGCTAAACCAGCTTCAGCTAAGAACAATGCTGTCAAACCTGAATCTTCTGGAAAGCAAAAGGTCAAGATTGAAGAACCAACCAAAGATGAGGTTGATGAAGACGAGTCTGCTTCTGACATGGATGACTCAATGGACTCAGATGACATGGATGATTCTGATGATGAAAGTGAGGATGATTCTGATGAGGAAGATGAAGAGACACCAGCCCCTAAGAAGCCTGAATCTAAGAAGAGAGCCCAAGTCTCTGAATCAGCCAAAACTCCTGTTTCTGCTAAAAAGGCAAAGATAGACACCACTACTCCTCAGAAGACTGATGCTAAGAAGGGAGGCCACACAGACACACCACACCCTGCTAAGAAGGGGAAGACTCCTGCTACTGATAAATCCAAGGCACAAACTCCAAAGTCTGCTGGTGGTAATTTCTCTTGTGGCTCCTGCAGTAAGGCATTCGGTTCAGATGGGGCTCTTCAGTCCCACAACAAGGCCAAGCATAGTGCTGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

285

Amino Acids

30.47

Weight (kDa)

4.76

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 78 4.6e-12 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 20
AcuI CTGAAG 3 cut(s) 267, 345, 800
AfiI CCNNNNNNNGG 3 cut(s) 20, 201, 829
AgsI TTSAA 2 cut(s) 344, 419
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 5 cut(s) 74, 115, 190, 359, 365
AluI AGCT 5 cut(s) 74, 115, 190, 359, 365
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 539, 595
AoxI GGCC 3 cut(s) 99, 676, 831
ApeKI GCWGC 1 cut(s) 71
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AsuHPI GGTGA 2 cut(s) 19, 260
BanII GRGCYC 3 cut(s) 192, 586, 814
BbsI GAAGAC 3 cut(s) 453, 662, 719
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 83
BccI CCATC 2 cut(s) 238, 800
BceAI ACGGC 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 539, 595
BfaI CTAG 2 cut(s) 53, 138
BfmI CTRYAG 2 cut(s) 324, 784
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 781
BmrI ACTGGG 1 cut(s) 308
BmsI GCATC 1 cut(s) 652
BmuI ACTGGG 1 cut(s) 308
BpiI GAAGAC 3 cut(s) 453, 662, 719
BsaJI CCNNGG 2 cut(s) 19, 735
BsaXI ACNNNNNCTCC 2 cut(s) 631, 661
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 201, 829
Bse1I ACTGG 2 cut(s) 206, 314
Bse3DI GCAATG 1 cut(s) 31
BseDI CCNNGG 2 cut(s) 19, 735
BseGI GGATG 3 cut(s) 475, 502, 526
BseLI CCNNNNNNNGG 3 cut(s) 20, 201, 829
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 3 cut(s) 164, 498, 665
BseNI ACTGG 2 cut(s) 206, 314
BseRI GAGGAG 3 cut(s) 194, 314, 639
BseXI GCAGC 1 cut(s) 83
BshFI GGCC 3 cut(s) 101, 678, 833
BsiHKAI GWGCWC 1 cut(s) 192
BslFI GGGAC 2 cut(s) 138, 805
BslI CCNNNNNNNGG 3 cut(s) 20, 201, 829
BsmAI GTCTC 2 cut(s) 539, 595
BsmFI GGGAC 2 cut(s) 138, 805
BsmI GAATGC 1 cut(s) 794
BsnI GGCC 3 cut(s) 101, 678, 833
Bsp1286I GDGCHC 3 cut(s) 192, 586, 814
BspANI GGCC 3 cut(s) 101, 678, 833
BspCNI CTCAG 3 cut(s) 163, 497, 664
BspLI GGNNCC 1 cut(s) 781
BspMAI CTGCAG 1 cut(s) 788
BspQI GCTCTTC 1 cut(s) 819
BsrDI GCAATG 1 cut(s) 31
BsrI ACTGG 2 cut(s) 206, 314
BssECI CCNNGG 2 cut(s) 19, 735
BssT1I CCWWGG 2 cut(s) 19, 735
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 4 cut(s) 291, 537, 572, 819
BstDEI CTNAG 8 cut(s) 150, 366, 484, 558, 573, 651, 666, 702
BstF5I GGATG 3 cut(s) 475, 502, 526
BstMAI GTCTC 2 cut(s) 539, 595
BstMWI GCNNNNNNNGC 3 cut(s) 68, 356, 626
BstSFI CTRYAG 2 cut(s) 324, 784
BstV1I GCAGC 1 cut(s) 83
BstV2I GAAGAC 3 cut(s) 453, 662, 719
BstXI CCANNNNNNTGG 1 cut(s) 227
BsuRI GGCC 3 cut(s) 101, 678, 833
BtsCI GGATG 3 cut(s) 475, 502, 526
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 3 cut(s) 85, 220, 321
CviAII CATG 2 cut(s) 466, 493
DdeI CTNAG 8 cut(s) 150, 366, 484, 558, 573, 651, 666, 702
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 4 cut(s) 291, 537, 572, 819
EarI CTCTTC 4 cut(s) 291, 537, 572, 819
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 2 cut(s) 19, 735
Eco24I GRGCYC 3 cut(s) 192, 586, 814
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 3 cut(s) 267, 345, 800
EcoICRI GAGCTC 1 cut(s) 190
EcoT14I CCWWGG 2 cut(s) 19, 735
EcoT38I GRGCYC 3 cut(s) 192, 586, 814
ErhI CCWWGG 2 cut(s) 19, 735
FaeI CATG 2 cut(s) 469, 496
FaiI YATR 5 cut(s) 93, 276, 467, 494, 840
FaqI GGGAC 2 cut(s) 138, 805
FatI CATG 2 cut(s) 465, 492
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 3 cut(s) 482, 509, 533
FriOI GRGCYC 3 cut(s) 192, 586, 814
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 2 cut(s) 53, 138
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 3 cut(s) 101, 678, 833
Hin1II CATG 2 cut(s) 469, 496
HindIII AAGCTT 1 cut(s) 113
HphI GGTGA 2 cut(s) 19, 260
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 9 cut(s) 286, 292, 463, 487, 505, 529, 595, 654, 805
Hpy188III TCNNGA 2 cut(s) 396, 412
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 3 cut(s) 61, 664, 700
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 34, 786
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 356, 626
HpyF3I CTNAG 8 cut(s) 150, 366, 484, 558, 573, 651, 666, 702
Hsp92II CATG 2 cut(s) 469, 496
LguI GCTCTTC 1 cut(s) 819
LmnI GCTCC 1 cut(s) 785
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 652
MaeI CTAG 2 cut(s) 53, 138
MaeIII GTNAC 1 cut(s) 39
MhlI GDGCHC 3 cut(s) 192, 586, 814
MluCI AATT 2 cut(s) 262, 766
MlyI GAGTC 4 cut(s) 461, 467, 476, 709
MspA1I CMGCKG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 794
MwoI GCNNNNNNNGC 3 cut(s) 68, 356, 626
NlaIII CATG 2 cut(s) 469, 496
NlaIV GGNNCC 1 cut(s) 781
NmuCI GTSAC 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 819
PctI GAATGC 1 cut(s) 794
PfeI GAWTC 7 cut(s) 278, 287, 389, 500, 524, 569, 596
PflMI CCANNNNNTGG 1 cut(s) 20
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 4 cut(s) 460, 467, 476, 709
PpsI GAGTC 4 cut(s) 460, 467, 476, 709
Psp124BI GAGCTC 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 781
PstI CTGCAG 1 cut(s) 788
PvuII CAGCTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 819
SatI GCNGC 1 cut(s) 72
SchI GAGTC 4 cut(s) 461, 467, 476, 709
SduI GDGCHC 3 cut(s) 192, 586, 814
SfaNI GCATC 1 cut(s) 652
SfcI CTRYAG 2 cut(s) 324, 784
Sse9I AATT 2 cut(s) 262, 766
SspMI CTAG 2 cut(s) 53, 138
SstI GAGCTC 1 cut(s) 192
StyI CCWWGG 2 cut(s) 19, 735
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 266
TasI AATT 2 cut(s) 262, 766
TfiI GAWTC 7 cut(s) 278, 287, 389, 500, 524, 569, 596
TscAI CASTG 3 cut(s) 85, 220, 321
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 4 cut(s) 17, 459, 525, 555
TspRI CASTG 3 cut(s) 85, 220, 321
Van91I CCANNNNNTGG 1 cut(s) 20
XspI CTAG 2 cut(s) 53, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.