Histone deacetylase HDT1-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G44750 AT3G44750 AT5G22650 AT5G22650 |
| fragaria_vesca | FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 |
| malus_domestica | MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1 |
| prunus_persica | Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1 |
| pyrus_communis | pycom03g09030 pycom11g12710 |
| rosa_chinensis | RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331 |
| rosa_laevigata | RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982 |
| rosa_multiflora | Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00025000 Rroxscaffold_1G00036030 |
| rosa_rugosa | Rorug05G0292300 |
| rosa_samantha | Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400 |
| rosa_wichuraiana | Rw2G041190 Rw5G034060 Rw7G037170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 216, 318, 420 |
| AcoI | YGGCCR | 1 cut(s) | 319 |
| AcuI | CTGAAG | 1 cut(s) | 443 |
| AgsI | TTSAA | 3 cut(s) | 41, 104, 179 |
| AluBI | AGCT | 1 cut(s) | 119 |
| AluI | AGCT | 1 cut(s) | 119 |
| Alw21I | GWGCWC | 1 cut(s) | 457 |
| Alw26I | GTCTC | 1 cut(s) | 468 |
| AoxI | GGCC | 1 cut(s) | 319 |
| ApeKI | GCWGC | 2 cut(s) | 83, 429 |
| BbsI | GAAGAC | 1 cut(s) | 362 |
| Bbv12I | GWGCWC | 1 cut(s) | 457 |
| BbvI | GCAGC | 2 cut(s) | 70, 441 |
| BccI | CCATC | 2 cut(s) | 299, 443 |
| BclI | TGATCA | 1 cut(s) | 277 |
| BcoDI | GTCTC | 1 cut(s) | 468 |
| BfmI | CTRYAG | 2 cut(s) | 84, 120 |
| BisI | GCNGC | 3 cut(s) | 84, 319, 430 |
| BlpI | GCTNAGC | 1 cut(s) | 477 |
| BlsI | GCNGC | 3 cut(s) | 85, 320, 431 |
| BpiI | GAAGAC | 1 cut(s) | 362 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 477 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 316, 346, 373, 403 |
| Bse3DI | GCAATG | 1 cut(s) | 139 |
| BseGI | GGATG | 2 cut(s) | 235, 256 |
| BseMI | GCAATG | 1 cut(s) | 139 |
| BseMII | CTCAG | 1 cut(s) | 249 |
| BseRI | GAGGAG | 1 cut(s) | 74 |
| BseXI | GCAGC | 2 cut(s) | 70, 441 |
| BshFI | GGCC | 1 cut(s) | 321 |
| BsiHKAI | GWGCWC | 1 cut(s) | 457 |
| BsmAI | GTCTC | 1 cut(s) | 468 |
| BsnI | GGCC | 1 cut(s) | 321 |
| Bsp1286I | GDGCHC | 1 cut(s) | 457 |
| Bsp143I | GATC | 1 cut(s) | 277 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 477 |
| BspACI | CCGC | 3 cut(s) | 216, 318, 420 |
| BspANI | GGCC | 1 cut(s) | 321 |
| BspCNI | CTCAG | 1 cut(s) | 248 |
| BspMAI | CTGCAG | 1 cut(s) | 88 |
| BspQI | GCTCTTC | 1 cut(s) | 462 |
| BsrDI | GCAATG | 1 cut(s) | 139 |
| BssMI | GATC | 1 cut(s) | 277 |
| Bst6I | CTCTTC | 2 cut(s) | 51, 462 |
| BstDEI | CTNAG | 2 cut(s) | 235, 477 |
| BstF5I | GGATG | 2 cut(s) | 235, 256 |
| BstKTI | GATC | 1 cut(s) | 280 |
| BstMAI | GTCTC | 1 cut(s) | 468 |
| BstMBI | GATC | 1 cut(s) | 277 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 116, 426 |
| BstSFI | CTRYAG | 2 cut(s) | 84, 120 |
| BstV1I | GCAGC | 2 cut(s) | 70, 441 |
| BstV2I | GAAGAC | 1 cut(s) | 362 |
| BsuRI | GGCC | 1 cut(s) | 321 |
| BtsCI | GGATG | 2 cut(s) | 235, 256 |
| CviAII | CATG | 1 cut(s) | 226 |
| CviJI | RGCY | 5 cut(s) | 119, 125, 200, 321, 476 |
| CviKI_1 | RGCY | 5 cut(s) | 119, 125, 200, 321, 476 |
| DdeI | CTNAG | 2 cut(s) | 235, 477 |
| DpnI | GATC | 1 cut(s) | 279 |
| DpnII | GATC | 1 cut(s) | 277 |
| EaeI | YGGCCR | 1 cut(s) | 319 |
| Eam1104I | CTCTTC | 2 cut(s) | 51, 462 |
| EarI | CTCTTC | 2 cut(s) | 51, 462 |
| Eco57I | CTGAAG | 1 cut(s) | 443 |
| FaeI | CATG | 1 cut(s) | 229 |
| FaiI | YATR | 4 cut(s) | 122, 227, 302, 483 |
| FatI | CATG | 1 cut(s) | 225 |
| FbaI | TGATCA | 1 cut(s) | 277 |
| Fnu4HI | GCNGC | 3 cut(s) | 84, 319, 430 |
| FokI | GGATG | 2 cut(s) | 242, 263 |
| Fsp4HI | GCNGC | 3 cut(s) | 84, 319, 430 |
| GluI | GCNGC | 3 cut(s) | 84, 319, 430 |
| HaeIII | GGCC | 1 cut(s) | 321 |
| Hin1II | CATG | 1 cut(s) | 229 |
| HinfI | GANTC | 7 cut(s) | 41, 47, 149, 212, 233, 260, 358 |
| Hpy188I | TCNGA | 6 cut(s) | 46, 52, 223, 238, 277, 448 |
| Hpy188III | TCNNGA | 1 cut(s) | 156 |
| HpyAV | CCTTC | 2 cut(s) | 307, 343 |
| HpyCH4V | TGCA | 4 cut(s) | 86, 110, 344, 429 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 116, 426 |
| HpyF3I | CTNAG | 2 cut(s) | 235, 477 |
| Hsp92II | CATG | 1 cut(s) | 229 |
| Ksp22I | TGATCA | 1 cut(s) | 277 |
| Kzo9I | GATC | 1 cut(s) | 277 |
| LguI | GCTCTTC | 1 cut(s) | 462 |
| LpnPI | CCDG | 8 cut(s) | 129, 141, 159, 354, 375, 387, 430, 474 |
| Lsp1109I | GCAGC | 2 cut(s) | 70, 441 |
| MalI | GATC | 1 cut(s) | 279 |
| MboI | GATC | 1 cut(s) | 277 |
| MboII | GAAGA | 9 cut(s) | 65, 68, 77, 144, 191, 218, 266, 367, 449 |
| MhlI | GDGCHC | 1 cut(s) | 457 |
| MluCI | AATT | 1 cut(s) | 409 |
| MlyI | GAGTC | 4 cut(s) | 56, 227, 254, 352 |
| MnlI | CCTC | 3 cut(s) | 52, 55, 190 |
| MseI | TTAA | 1 cut(s) | 171 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 116, 426 |
| NdeII | GATC | 1 cut(s) | 277 |
| NlaIII | CATG | 1 cut(s) | 229 |
| PciSI | GCTCTTC | 1 cut(s) | 462 |
| PfeI | GAWTC | 3 cut(s) | 41, 149, 212 |
| PkrI | GCNGC | 3 cut(s) | 85, 320, 431 |
| PleI | GAGTC | 4 cut(s) | 55, 227, 254, 352 |
| PpsI | GAGTC | 4 cut(s) | 55, 227, 254, 352 |
| PstI | CTGCAG | 1 cut(s) | 88 |
| SapI | GCTCTTC | 1 cut(s) | 462 |
| SaqAI | TTAA | 1 cut(s) | 171 |
| SatI | GCNGC | 3 cut(s) | 84, 319, 430 |
| Sau3AI | GATC | 1 cut(s) | 277 |
| SchI | GAGTC | 4 cut(s) | 56, 227, 254, 352 |
| SduI | GDGCHC | 1 cut(s) | 457 |
| SetI | ASST | 3 cut(s) | 121, 148, 171 |
| SfcI | CTRYAG | 2 cut(s) | 84, 120 |
| Sse9I | AATT | 1 cut(s) | 409 |
| SsiI | CCGC | 3 cut(s) | 216, 318, 420 |
| TasI | AATT | 1 cut(s) | 409 |
| TauI | GCSGC | 1 cut(s) | 321 |
| TfiI | GAWTC | 3 cut(s) | 41, 149, 212 |
| Tru1I | TTAA | 1 cut(s) | 171 |
| Tru9I | TTAA | 1 cut(s) | 171 |
| TseI | GCWGC | 2 cut(s) | 83, 429 |
| TspDTI | ATGAA | 2 cut(s) | 219, 267 |