Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002189

Physical Location & Seq

Genomic Coordinates Reverse (-)

11644159 .. 11647240

Gene Structure 3082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12710.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGTTTTGGGGTGTTGAGGTGAAGGCTGGAGAGCCTCTAAAAGTAGTGCCAGAGGAAAGCTCTGTTATCCACTTATCACAGGCAACTCTGGGCGAGTTGAAAAAGGGAGGTGATCAGTGTGTTATCCATGTCAAGGTTGGGAACCAGAAGCTTGTTTTGGCAAATCTCTCATCTGATAAAATGCCTCAGATTCCCTTTGACTTGGTCTTTGACAAAGAGTTCGAGCTCTCGCACAACTTGAAAAGTGGGAGTGTCCACTTCTGTGTGTTTCTCCATTGCTTCCTTGACTACTTGCTCTGTTCTGGTGCCACTGAATCGGATGAGGAGGACCATTCTGTATTCACAGATTCAGAAGAGGATCTCCCACTGAATTTTACCGACAATGGTAAAGTTGTTGCAGCAAAGCCAGCTCCACCCAAGACTAATGCTGTCAAACCAGAATCTTCTGGAAAGCAGAAGGTTAATATTGTAGAGCCAATTAAGGATGAGGATGATTCTGATGACTCAGATGATGTTGATGATTCTGATGACGATGATGACGATAGAAGTTCTGATGAGGACATGCTTGGAGCTGATAGCAGTGATGAAGATGATGACGACAGTGAGGAAGAAGAGGAGACCCCAACTCCTAAGAAGAACTCCAAGAAAAGGCCCAATGAATCTGCTCCGAAAACTCCTGTCTCTGCTAAGAAGGCAAAGCAAGTTACTCCACAGAAGACTGATGGAAAGAAGGGTGTCCACACTGCTACACCACACCCAGCAAAGGGAGGAAAGACTCCTGCTACCTCTGACAAGTCCAAGCCACAAACACCCAAGTCTGCTGGCGGTGATCACTCTTGCAAGCCATGCAACAAGTCATTTAACTCCGATGGTGCTCTTTCGTCTCACAAGAAGGCCAAGCACAGCGCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

32.95

Weight (kDa)

4.9

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44750 AT3G44750 AT5G22650 AT5G22650
fragaria_vesca	FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940
malus_domestica	MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1
prunus_persica	Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1
pyrus_communis	pycom03g09030 pycom11g12710
rosa_chinensis	RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331
rosa_laevigata	RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982
rosa_multiflora	Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006
rosa_roxburghii	Rroxscaffold_1G00025000 Rroxscaffold_1G00036030
rosa_rugosa	Rorug05G0292300
rosa_samantha	Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400
rosa_wichuraiana	Rw2G041190 Rw5G034060 Rw7G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AciI	CCGC	1 cut(s)	828
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	373
AfeI	AGCGCT	1 cut(s)	910
AfiI	CCNNNNNNNGG	4 cut(s)	136, 651, 766, 767
AgsI	TTSAA	2 cut(s)	103, 244
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AleI	CACNNNNGTG	1 cut(s)	264
AluBI	AGCT	5 cut(s)	63, 154, 229, 413, 575
AluI	AGCT	5 cut(s)	63, 154, 229, 413, 575
Alw21I	GWGCWC	2 cut(s)	231, 880
Alw26I	GTCTC	3 cut(s)	614, 688, 891
AlwI	GGATC	1 cut(s)	369
Aor51HI	AGCGCT	1 cut(s)	910
AoxI	GGCC	2 cut(s)	653, 897
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	373
ArsI	GACNNNNNNTTYG	4 cut(s)	194, 206, 226, 238
AspLEI	GCGC	1 cut(s)	911
AspS9I	GGNCC	2 cut(s)	331, 654
AsuHPI	GGTGA	3 cut(s)	34, 125, 842
AvaII	GGWCC	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	725
Bbv12I	GWGCWC	2 cut(s)	231, 880
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	2 cut(s)	719, 866
BclI	TGATCA	2 cut(s)	115, 832
BcoDI	GTCTC	3 cut(s)	614, 688, 891
BfoI	RGCGCY	1 cut(s)	912
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	2 cut(s)	331, 654
BmiI	GGNNCC	2 cut(s)	146, 310
BpiI	GAAGAC	1 cut(s)	725
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	614
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 651, 766, 767
Bse3DI	GCAATG	1 cut(s)	277
BseGI	GGATG	3 cut(s)	328, 493, 499
BseLI	CCNNNNNNNGG	4 cut(s)	136, 651, 766, 767
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	203, 522
BseRI	GAGGAG	2 cut(s)	341, 632
BseXI	GCAGC	1 cut(s)	413
BseYI	CCCAGC	1 cut(s)	760
BshFI	GGCC	2 cut(s)	655, 899
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	2 cut(s)	231, 880
BslI	CCNNNNNNNGG	4 cut(s)	136, 651, 766, 767
BsmAI	GTCTC	3 cut(s)	614, 688, 891
BsmBI	CGTCTC	1 cut(s)	891
BsnI	GGCC	2 cut(s)	655, 899
Bso31I	GGTCTC	1 cut(s)	614
Bsp1286I	GDGCHC	2 cut(s)	231, 880
Bsp143I	GATC	3 cut(s)	115, 361, 832
BspACI	CCGC	1 cut(s)	828
BspANI	GGCC	2 cut(s)	655, 899
BspCNI	CTCAG	2 cut(s)	202, 521
BspLI	GGNNCC	2 cut(s)	146, 310
BspPI	GGATC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	277
BssMI	GATC	3 cut(s)	115, 361, 832
Bst4CI	ACNGT	1 cut(s)	605
Bst6I	CTCTTC	2 cut(s)	351, 609
BstAPI	GCANNNNNTGC	1 cut(s)	849
BstC8I	GCNNGC	3 cut(s)	411, 826, 845
BstDEI	CTNAG	5 cut(s)	189, 508, 633, 690, 912
BstF5I	GGATG	3 cut(s)	328, 493, 499
BstH2I	RGCGCY	1 cut(s)	912
BstHHI	GCGC	1 cut(s)	911
BstKTI	GATC	3 cut(s)	118, 364, 835
BstMAI	GTCTC	3 cut(s)	614, 688, 891
BstMBI	GATC	3 cut(s)	115, 361, 832
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 695, 849
BstNSI	RCATGY	1 cut(s)	568
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	1 cut(s)	725
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	655, 899
BtsCI	GGATG	3 cut(s)	328, 493, 499
BtsI	GCAGTG	2 cut(s)	589, 744
BtsIMutI	CAGTG	6 cut(s)	125, 312, 368, 589, 610, 744
Cac8I	GCNNGC	3 cut(s)	411, 826, 845
CfoI	GCGC	1 cut(s)	911
Cfr13I	GGNCC	2 cut(s)	331, 654
CviAII	CATG	3 cut(s)	131, 565, 849
DdeI	CTNAG	5 cut(s)	189, 508, 633, 690, 912
DpnI	GATC	3 cut(s)	117, 363, 834
DpnII	GATC	3 cut(s)	115, 361, 832
Eam1104I	CTCTTC	2 cut(s)	351, 609
EarI	CTCTTC	2 cut(s)	351, 609
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	331
Eco47III	AGCGCT	1 cut(s)	910
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	891
FaeI	CATG	3 cut(s)	134, 568, 852
FaiI	YATR	3 cut(s)	132, 566, 850
FatI	CATG	3 cut(s)	130, 564, 848
FbaI	TGATCA	2 cut(s)	115, 832
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	3 cut(s)	335, 500, 506
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	402
GlaI	GCGC	1 cut(s)	910
GluI	GCNGC	1 cut(s)	402
GsaI	CCCAGC	1 cut(s)	764
GsuI	CTGGAG	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	912
HaeIII	GGCC	2 cut(s)	655, 899
HhaI	GCGC	1 cut(s)	911
Hin1II	CATG	3 cut(s)	134, 568, 852
Hin6I	GCGC	1 cut(s)	909
HinP1I	GCGC	1 cut(s)	909
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	9 cut(s)	193, 317, 350, 443, 497, 506, 524, 662, 778
HphI	GGTGA	3 cut(s)	34, 125, 842
Hpy166II	GTNNAC	2 cut(s)	259, 742
Hpy188III	TCNNGA	1 cut(s)	450
Hpy8I	GTNNAC	2 cut(s)	259, 742
HpyAV	CCTTC	5 cut(s)	19, 454, 688, 727, 889
HpyCH4III	ACNGT	1 cut(s)	605
HpyCH4V	TGCA	3 cut(s)	401, 843, 852
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 695, 849
HpyF3I	CTNAG	5 cut(s)	189, 508, 633, 690, 912
Hsp92II	CATG	3 cut(s)	134, 568, 852
HspAI	GCGC	1 cut(s)	909
Ksp22I	TGATCA	2 cut(s)	115, 832
Kzo9I	GATC	3 cut(s)	115, 361, 832
LmnI	GCTCC	3 cut(s)	418, 572, 673
Lsp1109I	GCAGC	1 cut(s)	413
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	3 cut(s)	117, 363, 834
MboI	GATC	3 cut(s)	115, 361, 832
MboII	GAAGA	7 cut(s)	368, 438, 602, 623, 626, 649, 730
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	2 cut(s)	231, 880
MluCI	AATT	2 cut(s)	373, 480
MlyI	GAGTC	2 cut(s)	500, 772
MseI	TTAA	3 cut(s)	465, 483, 864
MslI	CAYNNNNRTG	1 cut(s)	264
MwoI	GCNNNNNNNGC	3 cut(s)	410, 695, 849
NdeII	GATC	3 cut(s)	115, 361, 832
NlaIII	CATG	3 cut(s)	134, 568, 852
NlaIV	GGNNCC	2 cut(s)	146, 310
NspI	RCATGY	1 cut(s)	568
OliI	CACNNNNGTG	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PfeI	GAWTC	7 cut(s)	193, 317, 350, 443, 497, 524, 662
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	2 cut(s)	500, 772
PpsI	GAGTC	2 cut(s)	500, 772
Psp124BI	GAGCTC	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	760
PspN4I	GGNNCC	2 cut(s)	146, 310
PspPI	GGNCC	2 cut(s)	331, 654
PsuI	RGATCY	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	3 cut(s)	465, 483, 864
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	3 cut(s)	115, 361, 832
Sau96I	GGNCC	2 cut(s)	331, 654
SchI	GAGTC	2 cut(s)	500, 772
SduI	GDGCHC	2 cut(s)	231, 880
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	2 cut(s)	373, 480
SsiI	CCGC	1 cut(s)	828
SspI	AATATT	1 cut(s)	469
SstI	GAGCTC	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	605
TaqI	TCGA	1 cut(s)	225
TasI	AATT	2 cut(s)	373, 480
TfiI	GAWTC	7 cut(s)	193, 317, 350, 443, 497, 524, 662
Tru1I	TTAA	3 cut(s)	465, 483, 864
Tru9I	TTAA	3 cut(s)	465, 483, 864
TscAI	CASTG	6 cut(s)	125, 319, 375, 589, 610, 751
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	2 cut(s)	603, 675
TspRI	CASTG	6 cut(s)	125, 319, 375, 589, 610, 751
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	373
XceI	RCATGY	1 cut(s)	568
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.