Rh7AG320500

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002189
Physical Location & Seq
Forward (+)
36266093 .. 36266890
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG320500.1

Sequence Viewer

Length: 351 bp
ATGTTGTGCAGATTGGGTGTTGAAGTGAAGGCTGGAGAGCCCCTGAGTGTAGTGCCAAACCAAGGCAATGTGGTGCATTTGTCACAGGCTTGTCTAGGCGAGTCAAAGAAGGCAGCTGACAGCATTGTTATCTATGGAAACACCAGAGAGCAGAAGCTTGTGTTGGGGCATCTCATTCTTAGCCAAATCCCACAGTTGTCATTTGATTTGGTCTTTGATGATGATTTTGAACTATCCCACAACTGGAAAAGTGGTACTGTCCACTTTGCTGCTGATCAATCTGTAATGGGAGATGAATATCCTTTCACTATATTTCTGCACTTTTCAGTAATTTATGGGTCTTTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.88

Weight (kDa)

5.12

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 6 - 89 2e-12 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 2 cut(s) 62, 243
AgsI TTSAA 2 cut(s) 23, 230
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 2 cut(s) 116, 157
AluI AGCT 2 cut(s) 116, 157
ApeKI GCWGC 2 cut(s) 113, 269
BanII GRGCYC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 125, 256
BclI TGATCA 1 cut(s) 274
BfaI CTAG 1 cut(s) 95
BisI GCNGC 2 cut(s) 114, 270
BlsI GCNGC 2 cut(s) 115, 271
BmsI GCATC 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 243
Bse1I ACTGG 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 61
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 2 cut(s) 62, 243
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 248
BseXI GCAGC 2 cut(s) 125, 256
BsgI GTGCAG 2 cut(s) 28, 302
BslI CCNNNNNNNGG 2 cut(s) 62, 243
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 195, 259
BstDEI CTNAG 2 cut(s) 44, 179
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstV1I GCAGC 2 cut(s) 125, 256
Csp6I GTAC 1 cut(s) 255
CviJI RGCY 6 cut(s) 32, 40, 89, 116, 157, 183
CviKI_1 RGCY 6 cut(s) 32, 40, 89, 116, 157, 183
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 2 cut(s) 44, 179
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 61
FaiI YATR 3 cut(s) 135, 311, 336
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 114, 270
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 114, 270
FspBI CTAG 1 cut(s) 95
GluI GCNGC 2 cut(s) 114, 270
GsuI CTGGAG 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 262
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 2 cut(s) 22, 103
HpyCH4III ACNGT 2 cut(s) 195, 259
HpyCH4V TGCA 3 cut(s) 9, 76, 319
HpyF3I CTNAG 2 cut(s) 44, 179
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 5 cut(s) 18, 56, 71, 157, 229
Lsp1109I GCAGC 2 cut(s) 125, 256
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 81
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 330
MlyI GAGTC 1 cut(s) 110
MseI TTAA 1 cut(s) 349
MspA1I CMGCKG 1 cut(s) 116
NdeII GATC 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 81
PkrI GCNGC 2 cut(s) 115, 271
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 349
SatI GCNGC 2 cut(s) 114, 270
Sau3AI GATC 1 cut(s) 274
SchI GAGTC 1 cut(s) 110
SduI GDGCHC 1 cut(s) 42
SetI ASST 2 cut(s) 118, 159
SfaNI GCATC 1 cut(s) 178
Sse9I AATT 1 cut(s) 330
SspMI CTAG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 2 cut(s) 195, 259
TasI AATT 1 cut(s) 330
Tru1I TTAA 1 cut(s) 349
Tru9I TTAA 1 cut(s) 349
TseFI GTSAC 1 cut(s) 81
TseI GCWGC 2 cut(s) 113, 269
Tsp45I GTSAC 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 309
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.