Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002189

Physical Location & Seq

Genomic Coordinates Forward (+)

52318681 .. 52319904

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG395900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTATTATTTATTATTCTTTCTCCTTGTTGTAGAGTTTGAATCAGAGTCATCAGAAGAGGAACTCCCAATGATTGCTGCAGAGAATGGAAAAGTTGAAAATGCAAAACCAGCTATAGCCAAGAGCAATGCTGTCAAACCTGAATCTTCTGGAAAGCAAAAGGTTAAGATTGAAGAACCAATCAAAGTTGAGGCTGATGAAGATGATTCCGCTTCTGACATGGATGACTCAGATGACTTATTGGATGAAGATGACTCATCACCTGAATCTAAAAAAAGAGCCCAGGTCTCTGGATCAGTCAAAACTCCAGTTTCTGCTAAGAAGGCGAAGATAGTCGCCAGTACTCCTCAGAAGACTGATGGTAAGAAGGGTGGCCACACAGATACTCCACACCCTGCAAAGAAGGGAAAGACTCCTGCTACCGATAAATCCAAGACACAAACTCCAAAGTCTGCTGGTGGCAATTTCTCCTGCGGTTCCTGCAGCAAGTCATTTGGTTCAGATGGTGCTCTTCAGTCTCACAACAAGGCTAAGCATAGTGCTGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

19.36

Weight (kDa)

6.12

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44750 AT3G44750 AT5G22650 AT5G22650
fragaria_vesca	FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940
malus_domestica	MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1
prunus_persica	Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1
pyrus_communis	pycom03g09030 pycom11g12710
rosa_chinensis	RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331
rosa_laevigata	RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982
rosa_multiflora	Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006
rosa_roxburghii	Rroxscaffold_1G00025000 Rroxscaffold_1G00036030
rosa_rugosa	Rorug05G0292300
rosa_samantha	Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400
rosa_wichuraiana	Rw2G041190 Rw5G034060 Rw7G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	210, 474
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	497
AfaI	GTAC	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	41, 98, 173
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	2 cut(s)	292, 522
AlwI	GGATC	1 cut(s)	301
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	77, 483
AsuHPI	GGTGA	1 cut(s)	252
BalI	TGGCCA	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	2 cut(s)	64, 495
BccI	CCATC	2 cut(s)	353, 497
BciT130I	CCWGG	1 cut(s)	284
BcoDI	GTCTC	2 cut(s)	292, 522
BfmI	CTRYAG	3 cut(s)	78, 114, 481
BisI	GCNGC	2 cut(s)	78, 484
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	2 cut(s)	79, 485
BmcAI	AGTACT	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	478
BmrFI	CCNGG	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	531
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	4 cut(s)	370, 400, 427, 457
Bse1I	ACTGG	2 cut(s)	308, 339
Bse3DI	GCAATG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	229, 250
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	243, 362
BseNI	ACTGG	2 cut(s)	308, 339
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	64, 495
BshFI	GGCC	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	511
BsmAI	GTCTC	2 cut(s)	292, 522
BsnI	GGCC	1 cut(s)	375
Bso31I	GGTCTC	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	283, 511
Bsp143I	GATC	1 cut(s)	293
Bsp1720I	GCTNAGC	1 cut(s)	531
BspACI	CCGC	2 cut(s)	210, 474
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	2 cut(s)	242, 361
BspLI	GGNNCC	1 cut(s)	478
BspMAI	CTGCAG	2 cut(s)	82, 485
BspPI	GGATC	1 cut(s)	301
BspQI	GCTCTTC	1 cut(s)	516
BspTNI	GGTCTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	308, 339
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	51, 516
BstDEI	CTNAG	4 cut(s)	229, 318, 348, 531
BstF5I	GGATG	2 cut(s)	229, 250
BstKTI	GATC	1 cut(s)	296
BstMAI	GTCTC	2 cut(s)	292, 522
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 323, 480
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	282
BstSFI	CTRYAG	3 cut(s)	78, 114, 481
BstV1I	GCAGC	2 cut(s)	64, 495
BstV2I	GAAGAC	1 cut(s)	359
BstXI	CCANNNNNNTGG	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	229, 250
CaiI	CAGNNNCTG	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	6 cut(s)	113, 119, 194, 281, 375, 530
CviKI_1	RGCY	6 cut(s)	113, 119, 194, 281, 375, 530
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	4 cut(s)	229, 318, 348, 531
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	51, 516
EarI	CTCTTC	2 cut(s)	51, 516
Eco24I	GRGCYC	1 cut(s)	283
Eco31I	GGTCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	283
FaeI	CATG	1 cut(s)	223
FaiI	YATR	3 cut(s)	116, 221, 537
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	78, 484
FokI	GGATG	2 cut(s)	236, 257
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	2 cut(s)	78, 484
GluI	GCNGC	2 cut(s)	78, 484
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	375
Hin1II	CATG	1 cut(s)	223
HinfI	GANTC	8 cut(s)	41, 47, 143, 206, 227, 254, 266, 412
HphI	GGTGA	1 cut(s)	252
Hpy188I	TCNGA	6 cut(s)	46, 55, 217, 232, 351, 502
Hpy188III	TCNNGA	2 cut(s)	150, 291
HpyAV	CCTTC	3 cut(s)	316, 361, 397
HpyCH4V	TGCA	4 cut(s)	80, 104, 398, 483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 323, 480
HpyF3I	CTNAG	4 cut(s)	229, 318, 348, 531
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	293
LguI	GCTCTTC	1 cut(s)	516
Lsp1109I	GCAGC	2 cut(s)	64, 495
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	8 cut(s)	68, 138, 185, 212, 260, 340, 364, 503
MhlI	GDGCHC	2 cut(s)	283, 511
MlsI	TGGCCA	1 cut(s)	375
MluCI	AATT	1 cut(s)	463
MluNI	TGGCCA	1 cut(s)	375
MlyI	GAGTC	4 cut(s)	56, 221, 248, 406
MnlI	CCTC	3 cut(s)	52, 184, 357
Mox20I	TGGCCA	1 cut(s)	375
MscI	TGGCCA	1 cut(s)	375
MseI	TTAA	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	110, 323, 480
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	516
PfeI	GAWTC	4 cut(s)	41, 143, 206, 266
PkrI	GCNGC	2 cut(s)	79, 485
PleI	GAGTC	4 cut(s)	55, 221, 248, 406
PpsI	GAGTC	4 cut(s)	55, 221, 248, 406
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	478
PstI	CTGCAG	2 cut(s)	82, 485
PstNI	CAGNNNCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	516
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	2 cut(s)	78, 484
Sau3AI	GATC	1 cut(s)	293
ScaI	AGTACT	1 cut(s)	343
SchI	GAGTC	4 cut(s)	56, 221, 248, 406
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	2 cut(s)	283, 511
SetI	ASST	5 cut(s)	115, 142, 165, 265, 288
SfcI	CTRYAG	3 cut(s)	78, 114, 481
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	2 cut(s)	210, 474
StyD4I	CCNGG	1 cut(s)	282
TasI	AATT	1 cut(s)	463
TatI	WGTACW	1 cut(s)	341
TfiI	GAWTC	4 cut(s)	41, 143, 206, 266
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	2 cut(s)	77, 483
TspDTI	ATGAA	2 cut(s)	213, 261
ZrmI	AGTACT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.