Rh4BG009400

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002189
Physical Location & Seq
Reverse (-)
1297778 .. 1298374
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG009400.1

Sequence Viewer

Length: 333 bp
ATGTTTTCTGTGAACTTTAGCCCAGACCTTTTGACTACACAGGCTTGTCTAGGCGAGTTAAAGAAGGCAGCTGATATCATTGTTATCTATGGAAAGACCGGAGAGCAGAAGCTTGTGTTGGGACATCTCATTCCTGGCCAAATCCCACAGTTGTCATTTGATTTGGTCTTTGATGATGAGTTTGAACTATCCCACAACTGGAAAAGTGGTACTGTCCACTTTGCTGGTTATCAATCGGATGGTTATCAACTTGCAGTGGAGCTTGAAAAAGCTCTGAAGAAAAGCAGTGAACTGGGAACTCCTCCTGACATTGCTGCTTCTTTAAGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.09

Weight (kDa)

5.23

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 77 7.6e-11 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 2 cut(s) 185, 266
AjnI CCWGG 1 cut(s) 133
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 4 cut(s) 71, 112, 262, 272
AluI AGCT 4 cut(s) 71, 112, 262, 272
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 2 cut(s) 68, 314
BalI TGGCCA 1 cut(s) 138
BbvI GCAGC 2 cut(s) 80, 301
BccI CCATC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 135
BfaI CTAG 1 cut(s) 50
BisI GCNGC 2 cut(s) 69, 315
BlsI GCNGC 2 cut(s) 70, 316
Bme1390I CCNGG 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 135
BmrI ACTGGG 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 302
BsaBI GATNNNNATC 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 2 cut(s) 203, 297
Bse3DI GCAATG 1 cut(s) 309
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMI GCAATG 1 cut(s) 309
BseNI ACTGG 2 cut(s) 203, 297
BseRI GAGGAG 1 cut(s) 291
BseXI GCAGC 2 cut(s) 80, 301
BshFI GGCC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 1 cut(s) 138
BspANI GGCC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 309
BsrI ACTGG 2 cut(s) 203, 297
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 150, 214
BstF5I GGATG 1 cut(s) 244
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 80, 301
BstXI CCANNNNNNTGG 1 cut(s) 224
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 244
BtsI GCAGTG 2 cut(s) 261, 292
BtsIMutI CAGTG 2 cut(s) 261, 292
Csp6I GTAC 1 cut(s) 210
CviJI RGCY 7 cut(s) 21, 44, 71, 112, 138, 262, 272
CviKI_1 RGCY 7 cut(s) 21, 44, 71, 112, 138, 262, 272
CviQI GTAC 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 136
Eco32I GATATC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 133
EcoRV GATATC 1 cut(s) 76
FaiI YATR 1 cut(s) 90
FaqI GGGAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 69, 315
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 2 cut(s) 69, 315
FspBI CTAG 1 cut(s) 50
GluI GCNGC 2 cut(s) 69, 315
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 110
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 3 cut(s) 13, 217, 290
Hpy188I TCNGA 2 cut(s) 238, 276
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 3 cut(s) 13, 217, 290
HpyAV CCTTC 2 cut(s) 58, 321
HpyCH4III ACNGT 2 cut(s) 150, 214
HpyCH4V TGCA 1 cut(s) 254
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 9 cut(s) 26, 36, 112, 120, 147, 184, 210, 278, 318
Lsp1109I GCAGC 2 cut(s) 80, 301
MaeI CTAG 1 cut(s) 50
MboII GAAGA 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 138
MluNI TGGCCA 1 cut(s) 138
MnlI CCTC 1 cut(s) 312
Mox20I TGGCCA 1 cut(s) 138
MscI TGGCCA 1 cut(s) 138
MseI TTAA 2 cut(s) 59, 323
Msp20I TGGCCA 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
PkrI GCNGC 2 cut(s) 70, 316
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 59, 323
SatI GCNGC 2 cut(s) 69, 315
ScrFI CCNGG 1 cut(s) 135
SetI ASST 6 cut(s) 30, 73, 114, 264, 274, 332
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 2 cut(s) 150, 214
Tru1I TTAA 2 cut(s) 59, 323
Tru9I TTAA 2 cut(s) 59, 323
TscAI CASTG 2 cut(s) 261, 292
TseI GCWGC 2 cut(s) 68, 314
TspRI CASTG 2 cut(s) 261, 292
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.