Rmu_sc0011151.1_g000006

Histone deacetylase HDT1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011151.1
Physical Location & Seq
Forward (+)
21649 .. 27748
6100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011151.1_g000006.1.cds

Sequence Viewer

Length: 1845 bp
ctgtgtgggttgaagaagggggacattgtggagctaacccagtgtcccaggtcatggggaaagggcttcgagattgatcagatcgaaccgctggagaattatcctaaggttctaattttcacaccgggatctagaatcagtccgatcatgtccctgattgaatcagggtttaatgttgataggggatttgacgtgaagctcttctatgaggccagaaaccttgccaaaatgcaacctttgatgagggcttttgacctgttcatgtatcgggttgtccttatgaaatgttgtgcagattggaacccttttgcttcatggtccatcgctgagctactgtgtgggttgaagaagggggacattgtggagctaacccagtgtcccaggtcatggggaaagggcttcgagattgatcagatcgaaccgctggagaattatcctaaggttctaattttcacaccgggatctagaatcagtccgatcatgtccctgattgaatcagggtttaatgttgataggggatttgacgtgaagctcttctatgaggccagaaaccttgccaaaatgcaacctttgatgagggcttttgacctgttcatgtatcgggttgtccttatgaaatgttgtgcagattgggtatgcaattttgatgtttgcattcagtatatgttgtcgggcgagtcaaagaaggcagctgacagcattgttatctatggaaagatcagagagcagaagcttgtgttggggcatctcattcctagccaaatcccacagttgtcatttgatttggtctttgatgatgagtttgaactatcccacaactggaaaagtgagtttgaatcagagtcagaagaagaggaggaagaactcccaatgattgctgcagagaatggaaaagttgaaaatgcaaaaccagctatagccaagagcaatgctgtcaaacctgaatcttctggaaagcaaaaggttaagattgaagaaccaatcaaagttgtggctgatgaagatgattccgcttctgacatggatgactcagatgacttattggatgaagatgactcatcagatgatgatgatgatgaaagtgaggatgattctgatgaggaagatgaagagacacctactcctaagaagcctgaatctaagaaaagagcccaggtctctggatcagtcaaaactccagtttctgctaagaaggcaaagatagtcaccagtactcctcagaagactgatggtaagaagggcggccacacagatactccacaccctgcaaagaaggggaagactcctgctactgataaatccaagacacaaactccaaaatctgctggtggcaatttctcctgcggttcctgcagcaagtcatttggttcagatggtgctcttcagtctcacaacaaggctaagcataagaccaccacttctagccaccatccattttccaatcctaagcttcatatcatactccttcctcctaatcctattcgaaaggaaccgaaaggcctcccctacaagcttgaaggcctcgtcggagcccaaatgggggttcttatcaggggctctacttggaggatcttgtaccagttgggaggttttggggtagcgttcttgtgggcggtgcggaggatctcgaaggcggtggccatggaggagacgccgtccaggttcgggctcaggcgagcgcgggagcatcggagccttggaccgatcaaactccgagcccagcgacctaattggggggtgtggagggttaggttggagatgggtccgataccgaggtgcaagagaagtgtggcgtcgttttgggtggataatttgaggctttgggagaggaataggcactggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

614

Amino Acids

69.07

Weight (kDa)

6.91

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 54, 387
AccII CGCG 1 cut(s) 1681
AciI CCGC 9 cut(s) 89, 422, 1011, 1242, 1344, 1613, 1618, 1634, 1681
AclWI GGATC 5 cut(s) 136, 469, 1171, 1577, 1631
AcoI YGGCCR 2 cut(s) 1243, 1638
AcuI CTGAAG 1 cut(s) 1367
AcyI GRCGYC 2 cut(s) 1652, 1793
AfaI GTAC 2 cut(s) 1213, 1577
AfiI CCNNNNNNNGG 7 cut(s) 54, 387, 819, 1539, 1540, 1665, 1733
AgsI TTSAA 9 cut(s) 13, 161, 346, 494, 806, 836, 899, 974, 1517
AjiI CACGTC 2 cut(s) 193, 526
AjnI CCWGG 4 cut(s) 47, 380, 1152, 1658
AjuI GAANNNNNNNTTGG 4 cut(s) 722, 754, 1527, 1559
Alw21I GWGCWC 1 cut(s) 1381
Alw26I GTCTC 4 cut(s) 1106, 1162, 1392, 1643
AlwI GGATC 5 cut(s) 136, 469, 1171, 1577, 1631
AlwNI CAGNNNCTG 1 cut(s) 1184
AoxI GGCC 6 cut(s) 210, 543, 1243, 1498, 1519, 1638
ApeKI GCWGC 3 cut(s) 689, 878, 1353
Asp700I GAANNNNTTC 2 cut(s) 200, 533
AspLEI GCGC 1 cut(s) 1681
AspS9I GGNCC 3 cut(s) 318, 1700, 1763
AsuC2I CCSGG 2 cut(s) 126, 459
AsuHPI GGTGA 1 cut(s) 1198
AsuII TTCGAA 1 cut(s) 1483
AvaII GGWCC 3 cut(s) 318, 1700, 1763
AxyI CCTNAGG 2 cut(s) 105, 438
BaeI ACNNNNGTAYC 2 cut(s) 1760, 1793
BalI TGGCCA 1 cut(s) 1640
BanII GRGCYC 5 cut(s) 1153, 1534, 1559, 1671, 1720
BbsI GAAGAC 2 cut(s) 1229, 1286
Bbv12I GWGCWC 1 cut(s) 1381
BbvI GCAGC 3 cut(s) 701, 865, 1365
BccI CCATC 5 cut(s) 329, 1223, 1367, 1437, 1753
BceAI ACGGC 1 cut(s) 1639
BciT130I CCWGG 4 cut(s) 49, 382, 1154, 1660
BclI TGATCA 2 cut(s) 76, 409
BcnI CCSGG 2 cut(s) 126, 459
BcoDI GTCTC 4 cut(s) 1106, 1162, 1392, 1643
BfaI CTAG 4 cut(s) 132, 465, 756, 1422
BfmI CTRYAG 3 cut(s) 879, 915, 1351
BisI GCNGC 4 cut(s) 690, 879, 1243, 1354
BlpI GCTNAGC 2 cut(s) 327, 1401
BlsI GCNGC 4 cut(s) 691, 880, 1244, 1355
BmcAI AGTACT 1 cut(s) 1213
Bme1390I CCNGG 6 cut(s) 49, 126, 382, 459, 1154, 1660
Bme18I GGWCC 3 cut(s) 318, 1700, 1763
BmgBI CACGTC 2 cut(s) 193, 526
BmgT120I GGNCC 3 cut(s) 318, 1700, 1763
BmiI GGNNCC 6 cut(s) 302, 1348, 1491, 1531, 1694, 1764
BmrFI CCNGG 6 cut(s) 49, 126, 382, 459, 1154, 1660
BmrI ACTGGG 2 cut(s) 34, 367
BmsI GCATC 2 cut(s) 754, 1696
BmuI ACTGGG 2 cut(s) 34, 367
BpiI GAAGAC 2 cut(s) 1229, 1286
BpmI CTGGAG 3 cut(s) 113, 446, 1161
Bpu10I CCTNAGC 2 cut(s) 1446, 1670
Bpu1102I GCTNAGC 2 cut(s) 327, 1401
Bpu14I TTCGAA 1 cut(s) 1483
BpuMI CCSGG 2 cut(s) 126, 459
BsaHI GRCGYC 2 cut(s) 1652, 1793
BsaI GGTCTC 1 cut(s) 1162
BsaJI CCNNGG 6 cut(s) 47, 380, 1152, 1641, 1696, 1772
Bsc4I CCNNNNNNNGG 7 cut(s) 54, 387, 819, 1539, 1540, 1665, 1733
Bse1I ACTGG 7 cut(s) 40, 373, 824, 1178, 1209, 1579, 1844
Bse21I CCTNAGG 2 cut(s) 105, 438
Bse3DI GCAATG 1 cut(s) 934
BseBI CCWGG 4 cut(s) 49, 382, 1154, 1660
BseDI CCNNGG 6 cut(s) 47, 380, 1152, 1641, 1696, 1772
BseGI GGATG 4 cut(s) 1030, 1051, 1093, 1429
BseLI CCNNNNNNNGG 7 cut(s) 54, 387, 819, 1539, 1540, 1665, 1733
BseMI GCAATG 1 cut(s) 934
BseMII CTCAG 4 cut(s) 318, 1044, 1232, 1684
BseNI ACTGG 7 cut(s) 40, 373, 824, 1178, 1209, 1579, 1844
BseRI GAGGAG 3 cut(s) 869, 1206, 1661
BseXI GCAGC 3 cut(s) 701, 865, 1365
BseYI CCCAGC 1 cut(s) 1719
BsgI GTGCAG 2 cut(s) 312, 645
Bsh1236I CGCG 1 cut(s) 1681
BshFI GGCC 6 cut(s) 212, 545, 1245, 1500, 1521, 1640
BsiHKAI GWGCWC 1 cut(s) 1381
BsiSI CCGG 2 cut(s) 125, 458
BslFI GGGAC 6 cut(s) 30, 35, 136, 363, 368, 469
BslI CCNNNNNNNGG 7 cut(s) 54, 387, 819, 1539, 1540, 1665, 1733
BsmAI GTCTC 4 cut(s) 1106, 1162, 1392, 1643
BsmBI CGTCTC 1 cut(s) 1643
BsmFI GGGAC 6 cut(s) 30, 35, 136, 363, 368, 469
BsmI GAATGC 1 cut(s) 654
BsnI GGCC 6 cut(s) 212, 545, 1245, 1500, 1521, 1640
Bso31I GGTCTC 1 cut(s) 1162
Bsp119I TTCGAA 1 cut(s) 1483
Bsp1286I GDGCHC 6 cut(s) 1153, 1381, 1534, 1559, 1671, 1720
Bsp1720I GCTNAGC 2 cut(s) 327, 1401
Bsp19I CCATGG 1 cut(s) 1641
BspACI CCGC 9 cut(s) 89, 422, 1011, 1242, 1344, 1613, 1618, 1634, 1681
BspANI GGCC 6 cut(s) 212, 545, 1245, 1500, 1521, 1640
BspCNI CTCAG 4 cut(s) 319, 1043, 1231, 1683
BspFNI CGCG 1 cut(s) 1681
BspLI GGNNCC 6 cut(s) 302, 1348, 1491, 1531, 1694, 1764
BspMAI CTGCAG 2 cut(s) 883, 1355
BspPI GGATC 5 cut(s) 136, 469, 1171, 1577, 1631
BspQI GCTCTTC 3 cut(s) 206, 539, 1386
BspT104I TTCGAA 1 cut(s) 1483
BspTNI GGTCTC 1 cut(s) 1162
BsrDI GCAATG 1 cut(s) 934
BsrI ACTGG 7 cut(s) 40, 373, 824, 1178, 1209, 1579, 1844
BssECI CCNNGG 6 cut(s) 47, 380, 1152, 1641, 1696, 1772
BssNI GRCGYC 2 cut(s) 1652, 1793
BssT1I CCWWGG 2 cut(s) 1641, 1696
Bst2UI CCWGG 4 cut(s) 49, 382, 1154, 1660
Bst4CI ACNGT 2 cut(s) 336, 771
Bst6I CTCTTC 5 cut(s) 206, 539, 846, 1104, 1386
BstACI GRCGYC 2 cut(s) 1652, 1793
BstBI TTCGAA 1 cut(s) 1483
BstC8I GCNNGC 1 cut(s) 1677
BstDSI CCRYGG 1 cut(s) 1641
BstF5I GGATG 4 cut(s) 1030, 1051, 1093, 1429
BstFNI CGCG 1 cut(s) 1681
BstHHI GCGC 1 cut(s) 1681
BstMAI GTCTC 4 cut(s) 1106, 1162, 1392, 1643
BstMWI GCNNNNNNNGC 3 cut(s) 911, 1193, 1350
BstNI CCWGG 4 cut(s) 49, 382, 1154, 1660
BstSCI CCNGG 6 cut(s) 47, 124, 380, 457, 1152, 1658
BstSFI CTRYAG 3 cut(s) 879, 915, 1351
BstUI CGCG 1 cut(s) 1681
BstV1I GCAGC 3 cut(s) 701, 865, 1365
BstV2I GAAGAC 2 cut(s) 1229, 1286
BstX2I RGATCY 4 cut(s) 128, 461, 1569, 1623
BstXI CCANNNNNNTGG 1 cut(s) 1160
BstYI RGATCY 4 cut(s) 128, 461, 1569, 1623
Bsu36I CCTNAGG 2 cut(s) 105, 438
BsuRI GGCC 6 cut(s) 212, 545, 1245, 1500, 1521, 1640
BtgI CCRYGG 1 cut(s) 1641
BtgZI GCGATG 1 cut(s) 307
BtrI CACGTC 2 cut(s) 193, 526
BtsCI GGATG 4 cut(s) 1030, 1051, 1093, 1429
BtsIMutI CAGTG 3 cut(s) 47, 380, 1837
Cac8I GCNNGC 1 cut(s) 1677
CaiI CAGNNNCTG 1 cut(s) 1184
CfoI GCGC 1 cut(s) 1681
Cfr13I GGNCC 3 cut(s) 318, 1700, 1763
CseI GACGC 2 cut(s) 1660, 1782
Csp6I GTAC 2 cut(s) 1212, 1576
CviAII CATG 9 cut(s) 54, 148, 262, 315, 387, 481, 595, 1021, 1642
CviQI GTAC 2 cut(s) 1212, 1576
EaeI YGGCCR 2 cut(s) 1243, 1638
Eam1104I CTCTTC 5 cut(s) 206, 539, 846, 1104, 1386
EarI CTCTTC 5 cut(s) 206, 539, 846, 1104, 1386
Eco130I CCWWGG 2 cut(s) 1641, 1696
Eco147I AGGCCT 2 cut(s) 1500, 1521
Eco24I GRGCYC 5 cut(s) 1153, 1534, 1559, 1671, 1720
Eco31I GGTCTC 1 cut(s) 1162
Eco47I GGWCC 3 cut(s) 318, 1700, 1763
Eco57I CTGAAG 1 cut(s) 1367
Eco81I CCTNAGG 2 cut(s) 105, 438
EcoRII CCWGG 4 cut(s) 47, 380, 1152, 1658
EcoT14I CCWWGG 2 cut(s) 1641, 1696
EcoT38I GRGCYC 5 cut(s) 1153, 1534, 1559, 1671, 1720
ErhI CCWWGG 2 cut(s) 1641, 1696
Esp3I CGTCTC 1 cut(s) 1643
FaeI CATG 9 cut(s) 57, 151, 265, 318, 390, 484, 598, 1024, 1645
FaqI GGGAC 6 cut(s) 30, 35, 136, 363, 368, 469
FatI CATG 9 cut(s) 53, 147, 261, 314, 386, 480, 594, 1020, 1641
FauI CCCGC 1 cut(s) 1674
FbaI TGATCA 2 cut(s) 76, 409
Fnu4HI GCNGC 4 cut(s) 690, 879, 1243, 1354
FokI GGATG 4 cut(s) 1037, 1058, 1100, 1416
FriOI GRGCYC 5 cut(s) 1153, 1534, 1559, 1671, 1720
Fsp4HI GCNGC 4 cut(s) 690, 879, 1243, 1354
FspBI CTAG 4 cut(s) 132, 465, 756, 1422
GlaI GCGC 1 cut(s) 1680
GluI GCNGC 4 cut(s) 690, 879, 1243, 1354
GsaI CCCAGC 1 cut(s) 1723
GsuI CTGGAG 3 cut(s) 113, 446, 1161
HaeIII GGCC 6 cut(s) 212, 545, 1245, 1500, 1521, 1640
HapII CCGG 2 cut(s) 125, 458
HgaI GACGC 2 cut(s) 1660, 1782
HhaI GCGC 1 cut(s) 1681
Hin1I GRCGYC 2 cut(s) 1652, 1793
Hin1II CATG 9 cut(s) 57, 151, 265, 318, 390, 484, 598, 1024, 1645
Hin6I GCGC 1 cut(s) 1679
HinP1I GCGC 1 cut(s) 1679
HindIII AAGCTT 3 cut(s) 731, 1448, 1511
HpaII CCGG 2 cut(s) 125, 458
HphI GGTGA 1 cut(s) 1198
Hpy188III TCNNGA 7 cut(s) 70, 132, 403, 465, 951, 1161, 1627
Hpy99I CGWCG 2 cut(s) 1529, 1798
HpyAV CCTTC 9 cut(s) 10, 343, 679, 1186, 1231, 1267, 1475, 1511, 1624
HpyCH4III ACNGT 2 cut(s) 336, 771
HpyCH4IV ACGT 2 cut(s) 192, 525
HpyF10VI GCNNNNNNNGC 3 cut(s) 911, 1193, 1350
HpySE526I ACGT 2 cut(s) 192, 525
Hsp92I GRCGYC 2 cut(s) 1652, 1793
Hsp92II CATG 9 cut(s) 57, 151, 265, 318, 390, 484, 598, 1024, 1645
HspAI GCGC 1 cut(s) 1679
Ksp22I TGATCA 2 cut(s) 76, 409
LguI GCTCTTC 3 cut(s) 206, 539, 1386
LmnI GCTCC 5 cut(s) 31, 364, 1529, 1684, 1692
Lsp1109I GCAGC 3 cut(s) 701, 865, 1365
LweI GCATC 2 cut(s) 754, 1696
MaeI CTAG 4 cut(s) 132, 465, 756, 1422
MaeII ACGT 2 cut(s) 192, 525
MaeIII GTNAC 1 cut(s) 1204
MflI RGATCY 4 cut(s) 128, 461, 1569, 1623
MhlI GDGCHC 6 cut(s) 1153, 1381, 1534, 1559, 1671, 1720
MlsI TGGCCA 1 cut(s) 1640
MluCI AATT 8 cut(s) 97, 114, 430, 447, 640, 1333, 1729, 1810
MluNI TGGCCA 1 cut(s) 1640
MlyI GAGTC 5 cut(s) 686, 851, 1022, 1049, 1276
MmeI TCCRAC 2 cut(s) 1507, 1734
Mox20I TGGCCA 1 cut(s) 1640
MroXI GAANNNNTTC 2 cut(s) 200, 533
MscI TGGCCA 1 cut(s) 1640
MseI TTAA 3 cut(s) 171, 504, 966
Msp20I TGGCCA 1 cut(s) 1640
MspA1I CMGCKG 3 cut(s) 91, 424, 692
MspI CCGG 2 cut(s) 125, 458
MspR9I CCNGG 6 cut(s) 49, 126, 382, 459, 1154, 1660
Mva1269I GAATGC 1 cut(s) 654
MvaI CCWGG 4 cut(s) 49, 382, 1154, 1660
MvnI CGCG 1 cut(s) 1681
MwoI GCNNNNNNNGC 3 cut(s) 911, 1193, 1350
NciI CCSGG 2 cut(s) 126, 459
NcoI CCATGG 1 cut(s) 1641
NlaIII CATG 9 cut(s) 57, 151, 265, 318, 390, 484, 598, 1024, 1645
NlaIV GGNNCC 6 cut(s) 302, 1348, 1491, 1531, 1694, 1764
NmuCI GTSAC 1 cut(s) 1204
NspV TTCGAA 1 cut(s) 1483
PceI AGGCCT 2 cut(s) 1500, 1521
PciSI GCTCTTC 3 cut(s) 206, 539, 1386
PctI GAATGC 1 cut(s) 654
PdmI GAANNNNTTC 2 cut(s) 200, 533
PfeI GAWTC 9 cut(s) 135, 161, 468, 494, 836, 944, 1007, 1091, 1136
PflFI GACNNNGTC 1 cut(s) 1654
PflMI CCANNNNNTGG 2 cut(s) 54, 387
PkrI GCNGC 4 cut(s) 691, 880, 1244, 1355
PleI GAGTC 5 cut(s) 685, 850, 1022, 1049, 1276
PpsI GAGTC 5 cut(s) 685, 850, 1022, 1049, 1276
Psp6I CCWGG 4 cut(s) 47, 380, 1152, 1658
PspFI CCCAGC 1 cut(s) 1719
PspGI CCWGG 4 cut(s) 47, 380, 1152, 1658
PspN4I GGNNCC 6 cut(s) 302, 1348, 1491, 1531, 1694, 1764
PspPI GGNCC 3 cut(s) 318, 1700, 1763
PstI CTGCAG 2 cut(s) 883, 1355
PstNI CAGNNNCTG 1 cut(s) 1184
PsuI RGATCY 4 cut(s) 128, 461, 1569, 1623
PsyI GACNNNGTC 1 cut(s) 1654
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 2 cut(s) 1213, 1577
RsaNI GTAC 2 cut(s) 1212, 1576
SapI GCTCTTC 3 cut(s) 206, 539, 1386
SaqAI TTAA 3 cut(s) 171, 504, 966
SatI GCNGC 4 cut(s) 690, 879, 1243, 1354
Sau96I GGNCC 3 cut(s) 318, 1700, 1763
ScaI AGTACT 1 cut(s) 1213
SchI GAGTC 5 cut(s) 686, 851, 1022, 1049, 1276
ScrFI CCNGG 6 cut(s) 49, 126, 382, 459, 1154, 1660
SduI GDGCHC 6 cut(s) 1153, 1381, 1534, 1559, 1671, 1720
SfaNI GCATC 2 cut(s) 754, 1696
SfcI CTRYAG 3 cut(s) 879, 915, 1351
SfuI TTCGAA 1 cut(s) 1483
SinI GGWCC 3 cut(s) 318, 1700, 1763
Sse9I AATT 8 cut(s) 97, 114, 430, 447, 640, 1333, 1729, 1810
SseBI AGGCCT 2 cut(s) 1500, 1521
SsiI CCGC 9 cut(s) 89, 422, 1011, 1242, 1344, 1613, 1618, 1634, 1681
SspMI CTAG 4 cut(s) 132, 465, 756, 1422
StuI AGGCCT 2 cut(s) 1500, 1521
StyD4I CCNGG 6 cut(s) 47, 124, 380, 457, 1152, 1658
StyI CCWWGG 2 cut(s) 1641, 1696
TaaI ACNGT 2 cut(s) 336, 771
TaiI ACGT 2 cut(s) 195, 528
TaqI TCGA 6 cut(s) 69, 84, 402, 417, 1483, 1628
TaqII GACCGA 1 cut(s) 1717
TasI AATT 8 cut(s) 97, 114, 430, 447, 640, 1333, 1729, 1810
TatI WGTACW 1 cut(s) 1211
TauI GCSGC 1 cut(s) 1245
TfiI GAWTC 9 cut(s) 135, 161, 468, 494, 836, 944, 1007, 1091, 1136
Tru1I TTAA 3 cut(s) 171, 504, 966
Tru9I TTAA 3 cut(s) 171, 504, 966
TscAI CASTG 3 cut(s) 47, 380, 1844
TseFI GTSAC 1 cut(s) 1204
TseI GCWGC 3 cut(s) 689, 878, 1353
Tsp45I GTSAC 1 cut(s) 1204
TspRI CASTG 3 cut(s) 47, 380, 1844
Tth111I GACNNNGTC 1 cut(s) 1654
Van91I CCANNNNNTGG 2 cut(s) 54, 387
VpaK11BI GGWCC 3 cut(s) 318, 1700, 1763
XbaI TCTAGA 2 cut(s) 131, 464
XmnI GAANNNNTTC 2 cut(s) 200, 533
XspI CTAG 4 cut(s) 132, 465, 756, 1422
ZrmI AGTACT 1 cut(s) 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.