Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002605

Physical Location & Seq

Genomic Coordinates Reverse (-)

6754515 .. 6756595

Gene Structure 2081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAACTCACTCGCCATTAGAGTCTCCAAGGTTCTCAGATCCTCTTCAATATCTCCTTTAGCAATAAGTGCTGAGAGAGGCTCTAAGTCGTGGTTCTCTACTGGTCCTATCGATGAAGGTGTAGAAGAAGATTTTGAAGAAAATGTTACAGAAAGGCCTGAGCTTCAACCTCATGGAGTTGATCCTCGTAAAGGTTGGGGATTTCGCGGTGTTCATAGGGCGATTATTTGTGGGAAAGTAGGGCAAGCACCGTTACAGAAGATCTTAAGGAACGGGCGGACAGTAACGATCTTTACAGTAGGAACAGGTGGGATGTTTGATCAGAGGCTTGTAGGAGCTACTAATCAGCCAAAACCAGCTCAGTGGCATAGAATCGCTGTGCACAACGAAGTGCTTGGCTCTTACGCTGTCCAAAAACTCGCTAAAAACTCGTCGGTTTATGTGGAAGGTGATATTGAGACTAGAGTGTATAATGATAGCATCAGCAGTGAAGTGAAGAGTATCCCTGAGATTTGCGTTCGTCGTGATGGTAAGATTCGGATGATCAAATATGGTGAAAGCATTAGCAAAATCTCTTTTGATGAGCTAAAAGAAGGATTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

201

Amino Acids

22.24

Weight (kDa)

9.1

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSB	PF00436	71 - 174	2.2e-21	Single-strand binding protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11060
fragaria_vesca	FvH4_4g00740 FvH4_6g07030 FvH4_6g07030
malus_domestica	MD04G1196700.v1.1 MD12G1209600.v1.1
prunus_persica	Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1
pyrus_communis	pycom12g19690
rosa_chinensis	RchiOBHm_Chr1g0345881 RchiOBHm_Chr2g0130211 RchiOBHm_Chr3g0456561 RchiOBHm_Chr3g0481651 RchiOBHm_Chr4g0404121 RchiOBHm_Chr4g0439671 RchiOBHm_Chr6g0253121
rosa_laevigata	RLG00000000940 RLG00000007307 RLG00000025293
rosa_multiflora	Rmu_sc0002607.1_g000003 Rmu_sc0017908.1_g000012
rosa_roxburghii	Rroxscaffold_2G00133280 Rroxscaffold_4G00309030 Rroxscaffold_4G00314410 Rroxscaffold_5G00340470 Rroxscaffold_5G00380600 Rroxscaffold_6G00422620
rosa_rugosa	Rorug03G0013900 Rorug03G0013900
rosa_samantha	Rh1CG068600 Rh3AG074700 Rh3BG076400 Rh3DG078200 Rh5AG110200 Rh5DG213600 Rh7DG365300
rosa_wichuraiana	Rw3G006390 Rw3G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AciI	CCGC	2 cut(s)	207, 277
AclWI	GGATC	2 cut(s)	33, 176
AfiI	CCNNNNNNNGG	1 cut(s)	191
AflII	CTTAAG	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	48, 137, 167
AluBI	AGCT	4 cut(s)	163, 338, 359, 586
AluI	AGCT	4 cut(s)	163, 338, 359, 586
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	2 cut(s)	28, 452
Alw44I	GTGCAC	1 cut(s)	380
AlwI	GGATC	2 cut(s)	33, 176
AoxI	GGCC	1 cut(s)	155
ApaLI	GTGCAC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	461, 566
AvaII	GGWCC	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	384
BccI	CCATC	1 cut(s)	521
BciVI	GTATCC	1 cut(s)	512
BclI	TGATCA	2 cut(s)	319, 543
BcoDI	GTCTC	2 cut(s)	28, 452
BfaI	CTAG	1 cut(s)	462
BfrI	CTTAAG	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	512
BglII	AGATCT	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	104
BmsI	GCATC	1 cut(s)	489
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
Bpu10I	CCTNAGC	1 cut(s)	159
Bsa29I	ATCGAT	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	318, 546
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	5 cut(s)	49, 63, 150, 374, 498
BseNI	ACTGG	1 cut(s)	106
BseSI	GKGCMC	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	157
BshVI	ATCGAT	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	384
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	2 cut(s)	28, 452
BsnI	GGCC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	6 cut(s)	38, 181, 261, 288, 319, 543
BspACI	CCGC	2 cut(s)	207, 277
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	5 cut(s)	48, 64, 151, 373, 499
BspDI	ATCGAT	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	207
BspPI	GGATC	2 cut(s)	33, 176
BspTI	CTTAAG	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	6 cut(s)	38, 181, 261, 288, 319, 543
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	3 cut(s)	252, 283, 298
Bst6I	CTCTTC	2 cut(s)	49, 491
BstAFI	CTTAAG	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	6 cut(s)	35, 72, 84, 159, 360, 507
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	318, 546
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	6 cut(s)	41, 184, 264, 291, 322, 546
BstMAI	GTCTC	2 cut(s)	28, 452
BstMBI	GATC	6 cut(s)	38, 181, 261, 288, 319, 543
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	384
BstUI	CGCG	1 cut(s)	207
BstX2I	RGATCY	2 cut(s)	38, 261
BstXI	CCANNNNNNTGG	1 cut(s)	363
BstYI	RGATCY	2 cut(s)	38, 261
Bsu15I	ATCGAT	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	1 cut(s)	157
BsuTUI	ATCGAT	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	318, 546
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	2 cut(s)	368, 493
Cac8I	GCNNGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	111
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	9 cut(s)	81, 157, 163, 328, 338, 349, 359, 399, 586
CviKI_1	RGCY	9 cut(s)	81, 157, 163, 328, 338, 349, 359, 399, 586
DdeI	CTNAG	6 cut(s)	35, 72, 84, 159, 360, 507
DpnI	GATC	6 cut(s)	40, 183, 263, 290, 321, 545
DpnII	GATC	6 cut(s)	38, 181, 261, 288, 319, 543
Eam1104I	CTCTTC	2 cut(s)	49, 491
EarI	CTCTTC	2 cut(s)	49, 491
EciI	GGCGGA	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	176
FaiI	YATR	6 cut(s)	174, 216, 369, 441, 471, 552
FatI	CATG	1 cut(s)	172
FbaI	TGATCA	2 cut(s)	319, 543
FokI	GGATG	2 cut(s)	325, 553
FspBI	CTAG	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	3 cut(s)	21, 372, 535
HphI	GGTGA	2 cut(s)	461, 566
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	3 cut(s)	38, 324, 540
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	2 cut(s)	436, 525
HpyAV	CCTTC	3 cut(s)	110, 440, 587
HpyCH4III	ACNGT	3 cut(s)	252, 283, 298
HpyCH4V	TGCA	1 cut(s)	382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	6 cut(s)	35, 72, 84, 159, 360, 507
Hsp92II	CATG	1 cut(s)	176
Ksp22I	TGATCA	2 cut(s)	319, 543
Kzo9I	GATC	6 cut(s)	38, 181, 261, 288, 319, 543
LmnI	GCTCC	1 cut(s)	335
LpnPI	CCDG	5 cut(s)	87, 171, 291, 369, 519
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	1 cut(s)	462
MaeIII	GTNAC	3 cut(s)	145, 252, 283
MalI	GATC	6 cut(s)	40, 183, 263, 290, 321, 545
MboI	GATC	6 cut(s)	38, 181, 261, 288, 319, 543
MboII	GAAGA	6 cut(s)	36, 137, 140, 149, 271, 508
MflI	RGATCY	2 cut(s)	38, 261
MhlI	GDGCHC	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	5 cut(s)	52, 71, 180, 195, 318
MseI	TTAA	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	265
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	6 cut(s)	38, 181, 261, 288, 319, 543
NlaIII	CATG	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	372, 535
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	104
PsuI	RGATCY	2 cut(s)	38, 261
SaqAI	TTAA	1 cut(s)	266
Sau3AI	GATC	6 cut(s)	38, 181, 261, 288, 319, 543
Sau96I	GGNCC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	1 cut(s)	489
SinI	GGWCC	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
SseBI	AGGCCT	1 cut(s)	157
SsiI	CCGC	2 cut(s)	207, 277
SspMI	CTAG	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	3 cut(s)	252, 283, 298
TaqI	TCGA	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	372, 535
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	2 cut(s)	368, 493
TspDTI	ATGAA	3 cut(s)	17, 129, 203
TspRI	CASTG	2 cut(s)	368, 493
Vha464I	CTTAAG	1 cut(s)	265
VneI	GTGCAC	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	104
XagI	CCTNNNNNAGG	1 cut(s)	189
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.