Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002605

Physical Location & Seq

Genomic Coordinates Reverse (-)

14154421 .. 14165880

Gene Structure 11460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG068600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAAAAATCTGCTATTCACCTAGGTGAGGGTCACCTGGTGACGTGGCCGAATGACAGCCGCGAACTGATTCCAAGTAGAAATCTATTCACACTGTCACAAAAACTGAGGCTTCGAGCCGCCGTGGACGCCGCCGGCTTATCCTCTTCGTTCTGGAAACGGAGGACTGCAGGAAGCACTAGGTCATTGAGACTATGGTCTCGGCAGAACTGGTACAAGGTAGGTTCTCCACAACTAGTTACAAAAGAAAAGGAATCATTTTCGCTGACAAGTATTTGCCAATATAGGGCGAGTGATTGTAATCCCCAGTTCATTGCTTCATTGACATGCAGCTACGTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.93

Weight (kDa)

9.95

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11060
fragaria_vesca	FvH4_4g00740 FvH4_6g07030 FvH4_6g07030
malus_domestica	MD04G1196700.v1.1 MD12G1209600.v1.1
prunus_persica	Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1
pyrus_communis	pycom12g19690
rosa_chinensis	RchiOBHm_Chr1g0345881 RchiOBHm_Chr2g0130211 RchiOBHm_Chr3g0456561 RchiOBHm_Chr3g0481651 RchiOBHm_Chr4g0404121 RchiOBHm_Chr4g0439671 RchiOBHm_Chr6g0253121
rosa_laevigata	RLG00000000940 RLG00000007307 RLG00000025293
rosa_multiflora	Rmu_sc0002607.1_g000003 Rmu_sc0017908.1_g000012
rosa_roxburghii	Rroxscaffold_2G00133280 Rroxscaffold_4G00309030 Rroxscaffold_4G00314410 Rroxscaffold_5G00340470 Rroxscaffold_5G00380600 Rroxscaffold_6G00422620
rosa_rugosa	Rorug03G0013900 Rorug03G0013900
rosa_samantha	Rh1CG068600 Rh3AG074700 Rh3BG076400 Rh3DG078200 Rh5AG110200 Rh5DG213600 Rh7DG365300
rosa_wichuraiana	Rw3G006390 Rw3G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	63
AciI	CCGC	3 cut(s)	61, 120, 132
AcoI	YGGCCR	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	40
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	28, 286
AhlI	ACTAGT	1 cut(s)	235
AjiI	CACGTC	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	36
AleI	CACNNNNGTG	1 cut(s)	24
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	184, 204
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	330
Asp700I	GAANNNNTTC	1 cut(s)	69
AspA2I	CCTAGG	1 cut(s)	22
AsuHPI	GGTGA	4 cut(s)	11, 26, 38, 52
AvrII	CCTAGG	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	184, 204
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	3 cut(s)	23, 180, 236
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	4 cut(s)	61, 120, 132, 331
BlnI	CCTAGG	1 cut(s)	22
BlsI	GCNGC	4 cut(s)	62, 121, 133, 332
Bme1390I	CCNGG	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	38
BmrI	ACTGGG	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	301
BoxI	GACNNNNGTC	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	22, 123
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 286
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	215, 307
Bse3DI	GCAATG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	22, 123
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	28, 286
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	2 cut(s)	215, 307
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	28, 286
BsmAI	GTCTC	2 cut(s)	184, 204
BsnI	GGCC	1 cut(s)	49
Bso31I	GGTCTC	1 cut(s)	204
BspACI	CCGC	3 cut(s)	61, 120, 132
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	63
BspMAI	CTGCAG	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	215, 307
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	22, 123
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	151
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	123
BstEII	GGTNACC	1 cut(s)	32
BstENI	CCTNNNNNAGG	1 cut(s)	26
BstFNI	CGCG	1 cut(s)	63
BstMAI	GTCTC	2 cut(s)	184, 204
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	330
BstPAI	GACNNNNGTC	1 cut(s)	196
BstPI	GGTNACC	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	123
BtrI	CACGTC	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	134
CseI	GACGC	1 cut(s)	137
CsiI	ACCWGGT	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	327
CviJI	RGCY	6 cut(s)	49, 60, 112, 119, 138, 333
CviKI_1	RGCY	6 cut(s)	49, 60, 112, 119, 138, 333
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	107
DraIII	CACNNNGTG	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	32
EcoNI	CCTNNNNNAGG	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	1 cut(s)	330
FaiI	YATR	3 cut(s)	196, 285, 328
FatI	CATG	1 cut(s)	326
Fnu4HI	GCNGC	4 cut(s)	61, 120, 132, 331
Fsp4HI	GCNGC	4 cut(s)	61, 120, 132, 331
FspBI	CTAG	3 cut(s)	23, 180, 236
GluI	GCNGC	4 cut(s)	61, 120, 132, 331
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	330
HinfI	GANTC	2 cut(s)	70, 254
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	4 cut(s)	11, 26, 38, 52
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	2 cut(s)	44, 336
HpyCH4V	TGCA	2 cut(s)	170, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	2 cut(s)	44, 336
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	330
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
LpnPI	CCDG	7 cut(s)	23, 50, 139, 148, 156, 196, 320
MabI	ACCWGGT	1 cut(s)	36
MaeI	CTAG	3 cut(s)	23, 180, 236
MaeII	ACGT	2 cut(s)	44, 336
MaeIII	GTNAC	5 cut(s)	32, 40, 96, 238, 337
MboII	GAAGA	1 cut(s)	138
MnlI	CCTC	4 cut(s)	22, 102, 154, 156
MroNI	GCCGGC	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	69
MslI	CAYNNNNRTG	2 cut(s)	24, 325
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	128
NaeI	GCCGGC	1 cut(s)	136
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	330
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	3 cut(s)	32, 40, 96
NspI	RCATGY	1 cut(s)	330
OliI	CACNNNNGTG	1 cut(s)	24
PdiI	GCCGGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	70, 254
PkrI	GCNGC	4 cut(s)	62, 121, 133, 332
PshAI	GACNNNNGTC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	36
PspEI	GGTNACC	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	172
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	2 cut(s)	24, 325
SatI	GCNGC	4 cut(s)	61, 120, 132, 331
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	9 cut(s)	24, 28, 39, 47, 185, 222, 226, 335, 339
SexAI	ACCWGGT	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	2 cut(s)	24, 325
SpeI	ACTAGT	1 cut(s)	235
SsiI	CCGC	3 cut(s)	61, 120, 132
SspMI	CTAG	3 cut(s)	23, 180, 236
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	2 cut(s)	47, 339
TaqI	TCGA	1 cut(s)	115
TauI	GCSGC	3 cut(s)	63, 122, 134
TfiI	GAWTC	2 cut(s)	70, 254
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	3 cut(s)	32, 40, 96
TseI	GCWGC	1 cut(s)	330
Tsp45I	GTSAC	3 cut(s)	32, 40, 96
TspDTI	ATGAA	2 cut(s)	301, 309
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	99
XagI	CCTNNNNNAGG	1 cut(s)	26
XceI	RCATGY	1 cut(s)	330
XmaJI	CCTAGG	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	3 cut(s)	23, 180, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.