Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002607.1

Orthogroup ID

OG0002605

Physical Location & Seq

Genomic Coordinates Reverse (-)

7481 .. 9529

Gene Structure 2049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002607.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgagttcactcgctgcgagattttccaagttcatcagagtctctgttccttcctcgcaaacttcctcactggcagtaggcgggcaaagaagctcgaagttatggtactcgagcggctcaatcgacagtgacactaatgacgcaaaacaacttggtgccgaagaagatattgacgattttcttggtggcttgaaagatacaaatgtgcaagcccaaggtgtggatcccaagaggggttggggatttcgcggtgtgcacaaggcaattatttgtggaagagttggacaatccccagtgcagaagatcttgaggaatggccgaactgtaaccatattcactgttgggactgggggcatgtttgaccagagattactgggaaaggacttgcccagacctgctcagtggcaccgaattgctgtgcataatgacgcacttggggcttatgcagttaaacaatttgttaaaaattcatcagtttatgttgagggtgacattgaaactagagtttacaatgatagcatcaatggtgaagttaagaatattccagagatctgcattcgtcacgatgggaagatccgtcttataaggagtggagaaagcatcagcagtatgtccttggatgatctgcgagaagacttaccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

214

Amino Acids

23.42

Weight (kDa)

8.88

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11060
fragaria_vesca	FvH4_4g00740 FvH4_6g07030 FvH4_6g07030
malus_domestica	MD04G1196700.v1.1 MD12G1209600.v1.1
prunus_persica	Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1
pyrus_communis	pycom12g19690
rosa_chinensis	RchiOBHm_Chr1g0345881 RchiOBHm_Chr2g0130211 RchiOBHm_Chr3g0456561 RchiOBHm_Chr3g0481651 RchiOBHm_Chr4g0404121 RchiOBHm_Chr4g0439671 RchiOBHm_Chr6g0253121
rosa_laevigata	RLG00000000940 RLG00000007307 RLG00000025293
rosa_multiflora	Rmu_sc0002607.1_g000003 Rmu_sc0017908.1_g000012
rosa_roxburghii	Rroxscaffold_2G00133280 Rroxscaffold_4G00309030 Rroxscaffold_4G00314410 Rroxscaffold_5G00340470 Rroxscaffold_5G00380600 Rroxscaffold_6G00422620
rosa_rugosa	Rorug03G0013900 Rorug03G0013900
rosa_samantha	Rh1CG068600 Rh3AG074700 Rh3BG076400 Rh3DG078200 Rh5AG110200 Rh5DG213600 Rh7DG365300
rosa_wichuraiana	Rw3G006390 Rw3G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
Acc36I	ACCTGC	1 cut(s)	403
AccB1I	GGYRCC	2 cut(s)	155, 405
AccB7I	CCANNNNNTGG	1 cut(s)	220
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	249
AciI	CCGC	3 cut(s)	81, 114, 249
AclWI	GGATC	3 cut(s)	218, 231, 568
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	466
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	220, 233
AgsI	TTSAA	2 cut(s)	193, 497
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	46
Alw44I	GTGCAC	1 cut(s)	254
AlwI	GGATC	3 cut(s)	218, 231, 568
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	316
ApaLI	GTGCAC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	466
AsuHPI	GGTGA	2 cut(s)	500, 539
AvaI	CYCGRG	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	258
BaeI	ACNNNNGTAYC	2 cut(s)	189, 222
BamHI	GGATCC	1 cut(s)	223
BanI	GGYRCC	2 cut(s)	155, 405
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	258
BccI	CCATC	1 cut(s)	560
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	501
BfuAI	ACCTGC	1 cut(s)	403
BglII	AGATCT	2 cut(s)	303, 549
BisI	GCNGC	2 cut(s)	15, 115
BlsI	GCNGC	2 cut(s)	16, 116
BmeT110I	CYCGRG	1 cut(s)	109
BmiI	GGNNCC	3 cut(s)	157, 225, 407
BmrI	ACTGGG	3 cut(s)	287, 357, 383
BmsI	GCATC	2 cut(s)	528, 609
BmuI	ACTGGG	3 cut(s)	287, 357, 383
BpiI	GAAGAC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	328
BsaJI	CCNNGG	2 cut(s)	214, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 233
Bse1I	ACTGG	4 cut(s)	75, 293, 352, 378
BseDI	CCNNGG	2 cut(s)	214, 615
BseGI	GGATG	1 cut(s)	625
BseLI	CCNNNNNNNGG	2 cut(s)	220, 233
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	4 cut(s)	75, 293, 352, 378
BseSI	GKGCMC	1 cut(s)	258
BsgI	GTGCAG	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	318
BshNI	GGYRCC	2 cut(s)	155, 405
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	220, 233
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	318
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	5 cut(s)	223, 303, 549, 573, 622
BspACI	CCGC	3 cut(s)	81, 114, 249
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	157, 225, 407
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	3 cut(s)	218, 231, 568
BspT107I	GGYRCC	2 cut(s)	155, 405
BsrBI	CCGCTC	1 cut(s)	114
BsrI	ACTGG	4 cut(s)	75, 293, 352, 378
BssECI	CCNNGG	2 cut(s)	214, 615
BssMI	GATC	5 cut(s)	223, 303, 549, 573, 622
BssT1I	CCWWGG	2 cut(s)	214, 615
Bst4CI	ACNGT	3 cut(s)	128, 325, 340
Bst6I	CTCTTC	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	83, 210
BstDEI	CTNAG	2 cut(s)	399, 642
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	5 cut(s)	226, 306, 552, 576, 625
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	5 cut(s)	223, 303, 549, 573, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNSI	RCATGY	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	258
BstUI	CGCG	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	4 cut(s)	223, 303, 549, 573
BstYI	RGATCY	4 cut(s)	223, 303, 549, 573
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	625
BtsIMutI	CAGTG	5 cut(s)	68, 133, 300, 336, 407
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	83, 210
CseI	GACGC	2 cut(s)	149, 437
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	6 cut(s)	93, 117, 189, 212, 318, 440
CviKI_1	RGCY	6 cut(s)	93, 117, 189, 212, 318, 440
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	2 cut(s)	399, 642
DpnI	GATC	5 cut(s)	225, 305, 551, 575, 624
DpnII	GATC	5 cut(s)	223, 303, 549, 573, 622
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	214, 615
Eco88I	CYCGRG	1 cut(s)	109
EcoT14I	CCWWGG	2 cut(s)	214, 615
ErhI	CCWWGG	2 cut(s)	214, 615
FaeI	CATG	1 cut(s)	358
FaiI	YATR	8 cut(s)	103, 332, 356, 423, 444, 480, 584, 611
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	1 cut(s)	354
FauI	CCCGC	1 cut(s)	74
Fnu4HI	GCNGC	2 cut(s)	15, 115
FokI	GGATG	1 cut(s)	632
Fsp4HI	GCNGC	2 cut(s)	15, 115
FspBI	CTAG	1 cut(s)	501
GluI	GCNGC	2 cut(s)	15, 115
HaeIII	GGCC	1 cut(s)	318
HgaI	GACGC	2 cut(s)	149, 437
Hin1II	CATG	1 cut(s)	358
HinfI	GANTC	1 cut(s)	39
HphI	GGTGA	2 cut(s)	500, 539
Hpy166II	GTNNAC	3 cut(s)	8, 256, 508
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	3 cut(s)	307, 545, 563
Hpy8I	GTNNAC	3 cut(s)	8, 256, 508
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	3 cut(s)	128, 325, 340
HpyCH4V	TGCA	6 cut(s)	208, 256, 298, 421, 446, 555
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	2 cut(s)	399, 642
Hsp92II	CATG	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	223, 303, 549, 573, 622
LpnPI	CCDG	8 cut(s)	56, 306, 333, 359, 377, 403, 408, 558
LweI	GCATC	2 cut(s)	528, 609
MaeI	CTAG	1 cut(s)	501
MaeIII	GTNAC	4 cut(s)	128, 325, 488, 560
MalI	GATC	5 cut(s)	225, 305, 551, 575, 624
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	5 cut(s)	223, 303, 549, 573, 622
MboII	GAAGA	6 cut(s)	173, 176, 288, 313, 583, 644
MflI	RGATCY	4 cut(s)	223, 303, 549, 573
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	4 cut(s)	264, 411, 455, 466
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	5 cut(s)	64, 76, 225, 303, 478
MseI	TTAA	3 cut(s)	450, 462, 534
Mva1269I	GAATGC	1 cut(s)	555
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	5 cut(s)	223, 303, 549, 573, 622
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	3 cut(s)	157, 225, 407
NmuCI	GTSAC	3 cut(s)	128, 488, 560
NspI	RCATGY	1 cut(s)	358
PaeR7I	CTCGAG	1 cut(s)	109
PctI	GAATGC	1 cut(s)	555
PflMI	CCANNNNNTGG	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	16, 116
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PsiI	TTATAA	1 cut(s)	584
PspN4I	GGNNCC	3 cut(s)	157, 225, 407
PspXI	VCTCGAGB	1 cut(s)	109
PsuI	RGATCY	4 cut(s)	223, 303, 549, 573
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	3 cut(s)	450, 462, 534
SatI	GCNGC	2 cut(s)	15, 115
Sau3AI	GATC	5 cut(s)	223, 303, 549, 573, 622
SchI	GAGTC	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	4 cut(s)	95, 220, 397, 643
SfaNI	GCATC	2 cut(s)	528, 609
Sfr274I	CTCGAG	1 cut(s)	109
SlaI	CTCGAG	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	109, 307
SmoI	CTYRAG	2 cut(s)	109, 307
Sse9I	AATT	4 cut(s)	264, 411, 455, 466
SsiI	CCGC	3 cut(s)	81, 114, 249
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	1 cut(s)	501
StyI	CCWWGG	2 cut(s)	214, 615
TaaI	ACNGT	3 cut(s)	128, 325, 340
TaqI	TCGA	3 cut(s)	95, 110, 123
TasI	AATT	4 cut(s)	264, 411, 455, 466
TauI	GCSGC	1 cut(s)	117
Tru1I	TTAA	3 cut(s)	450, 462, 534
Tru9I	TTAA	3 cut(s)	450, 462, 534
TscAI	CASTG	5 cut(s)	75, 133, 300, 343, 407
TseFI	GTSAC	3 cut(s)	128, 488, 560
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	3 cut(s)	128, 488, 560
TspDTI	ATGAA	2 cut(s)	22, 459
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	5 cut(s)	75, 133, 300, 343, 407
Van91I	CCANNNNNTGG	1 cut(s)	220
VneI	GTGCAC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	466
XceI	RCATGY	1 cut(s)	358
XhoI	CTCGAG	1 cut(s)	109
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.