Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002605

Physical Location & Seq

Genomic Coordinates Reverse (-)

8906443 .. 8907903

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00340470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGTTCATCGGGACGCTGCCAGCCATGTTCATTGGAGACGCTACTCCGGTTTTGACCGTGGTGGCGGCGTATTTCGGGATCGTTCTTCTCAAAGGCATGGAGGCCATGGGCATCATCTTGAGGGTGGCTCACGGCGTGAGTTGAGTTTCGGCGACGGGGGCTACTTTGGGGGAGCCGTAGGCGCGAGACGGCGATCCAAGCTTGGCGGCTTGCTTAGGTTTCATCGGTGCTTTCTAGTTGCCATTCCTTCGGGCGTCGTGGCTCGGCTTGCTCGCGGCGGAGTGGAGTTGGTAGCTCCTTTGTTTTGGTGTGTACGACGGTTCTACACGGAGAGGGTACCCTTATTTCCTTACCTACTTGACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.71

Weight (kDa)

11.31

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11060
fragaria_vesca	FvH4_4g00740 FvH4_6g07030 FvH4_6g07030
malus_domestica	MD04G1196700.v1.1 MD12G1209600.v1.1
prunus_persica	Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1
pyrus_communis	pycom12g19690
rosa_chinensis	RchiOBHm_Chr1g0345881 RchiOBHm_Chr2g0130211 RchiOBHm_Chr3g0456561 RchiOBHm_Chr3g0481651 RchiOBHm_Chr4g0404121 RchiOBHm_Chr4g0439671 RchiOBHm_Chr6g0253121
rosa_laevigata	RLG00000000940 RLG00000007307 RLG00000025293
rosa_multiflora	Rmu_sc0002607.1_g000003 Rmu_sc0017908.1_g000012
rosa_roxburghii	Rroxscaffold_2G00133280 Rroxscaffold_4G00309030 Rroxscaffold_4G00314410 Rroxscaffold_5G00340470 Rroxscaffold_5G00380600 Rroxscaffold_6G00422620
rosa_rugosa	Rorug03G0013900 Rorug03G0013900
rosa_samantha	Rh1CG068600 Rh3AG074700 Rh3BG076400 Rh3DG078200 Rh5AG110200 Rh5DG213600 Rh7DG365300
rosa_wichuraiana	Rw3G006390 Rw3G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	337
AccII	CGCG	2 cut(s)	185, 276
AciI	CCGC	4 cut(s)	66, 207, 276, 279
AclWI	GGATC	2 cut(s)	87, 189
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	137
AfaI	GTAC	2 cut(s)	315, 339
AluBI	AGCT	2 cut(s)	202, 296
AluI	AGCT	2 cut(s)	202, 296
Alw26I	GTCTC	2 cut(s)	31, 181
AlwI	GGATC	2 cut(s)	87, 189
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	17
Asp718I	GGTACC	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	4
BceAI	ACGGC	3 cut(s)	149, 161, 206
BcoDI	GTCTC	2 cut(s)	31, 181
BfaI	CTAG	1 cut(s)	236
BisI	GCNGC	4 cut(s)	18, 67, 208, 277
BlsI	GCNGC	4 cut(s)	19, 68, 209, 278
BmiI	GGNNCC	2 cut(s)	175, 339
BmsI	GCATC	1 cut(s)	121
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
Bpu10I	CCTNAGC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	58, 106
BsaWI	WCCGGW	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	58, 106
BseXI	GCAGC	1 cut(s)	4
Bsh1236I	CGCG	2 cut(s)	185, 276
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	31, 181
BsmBI	CGTCTC	2 cut(s)	31, 181
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	79, 194
Bsp19I	CCATGG	1 cut(s)	106
BspACI	CCGC	4 cut(s)	66, 207, 276, 279
BspANI	GGCC	1 cut(s)	105
BspFNI	CGCG	2 cut(s)	185, 276
BspLI	GGNNCC	2 cut(s)	175, 339
BspPI	GGATC	2 cut(s)	87, 189
BspT107I	GGYRCC	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	58, 106
BssMI	GATC	2 cut(s)	79, 194
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	106
Bst4CI	ACNGT	2 cut(s)	59, 321
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	4 cut(s)	22, 212, 270, 274
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	2 cut(s)	58, 106
BstFNI	CGCG	2 cut(s)	185, 276
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	2 cut(s)	82, 197
BstMAI	GTCTC	2 cut(s)	31, 181
BstMBI	GATC	2 cut(s)	79, 194
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 182, 199, 269
BstUI	CGCG	2 cut(s)	185, 276
BstV1I	GCAGC	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	2 cut(s)	58, 106
Cac8I	GCNNGC	4 cut(s)	22, 212, 270, 274
CfoI	GCGC	1 cut(s)	185
CseI	GACGC	3 cut(s)	23, 48, 244
Csp6I	GTAC	2 cut(s)	314, 338
CviAII	CATG	3 cut(s)	26, 98, 107
CviQI	GTAC	2 cut(s)	314, 338
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	2 cut(s)	81, 196
DpnII	GATC	2 cut(s)	79, 194
DraIII	CACNNNGTG	1 cut(s)	137
EciI	GGCGGA	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
Esp3I	CGTCTC	2 cut(s)	31, 181
FaeI	CATG	3 cut(s)	29, 101, 110
FaiI	YATR	3 cut(s)	27, 99, 108
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	3 cut(s)	25, 97, 106
Fnu4HI	GCNGC	4 cut(s)	18, 67, 208, 277
Fsp4HI	GCNGC	4 cut(s)	18, 67, 208, 277
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	4 cut(s)	18, 67, 208, 277
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	3 cut(s)	23, 48, 244
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	29, 101, 110
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	200
HpaII	CCGG	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188III	TCNNGA	3 cut(s)	11, 77, 119
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	3 cut(s)	158, 260, 321
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	2 cut(s)	59, 321
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 182, 199, 269
HpyF3I	CTNAG	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	29, 101, 110
HspAI	GCGC	1 cut(s)	183
KpnI	GGTACC	1 cut(s)	341
Kzo9I	GATC	2 cut(s)	79, 194
LmnI	GCTCC	2 cut(s)	173, 301
LpnPI	CCDG	2 cut(s)	34, 61
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	236
MalI	GATC	2 cut(s)	81, 196
MboI	GATC	2 cut(s)	79, 194
MboII	GAAGA	1 cut(s)	78
MnlI	CCTC	3 cut(s)	95, 115, 327
MspI	CCGG	1 cut(s)	48
MvnI	CGCG	2 cut(s)	185, 276
MwoI	GCNNNNNNNGC	4 cut(s)	159, 182, 199, 269
NcoI	CCATGG	1 cut(s)	106
NdeII	GATC	2 cut(s)	79, 194
NlaIII	CATG	3 cut(s)	29, 101, 110
NlaIV	GGNNCC	2 cut(s)	175, 339
NmeAIII	GCCGAG	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	19, 68, 209, 278
PspN4I	GGNNCC	2 cut(s)	175, 339
RsaI	GTAC	2 cut(s)	315, 339
RsaNI	GTAC	2 cut(s)	314, 338
SatI	GCNGC	4 cut(s)	18, 67, 208, 277
Sau3AI	GATC	2 cut(s)	79, 194
SetI	ASST	4 cut(s)	204, 221, 298, 357
SfaNI	GCATC	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SsiI	CCGC	4 cut(s)	66, 207, 276, 279
SspMI	CTAG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	59, 321
TauI	GCSGC	3 cut(s)	69, 210, 279
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	20, 212
TspGWI	ACGGA	1 cut(s)	344
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.