Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002605

Physical Location & Seq

Genomic Coordinates Reverse (-)

60778155 .. 60780325

Gene Structure 2171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTTAACATGAGCTGTAGTATTACAGCGGTGGGCAGGCAAATAAGCTTGAAGTTGTGGTACTTGAGTGGCTCAACTGACAGTGACACTAATGACACAAAGAAAATTGGTGCTGAAGAAGATTTTGAGAATTTTCTTGGTTGCTTGAAAGATACGAATATGCAAGCCCAAGGTGTGGATCCCAAGAGGGGTTGGGGATTTCGTGGTGTGCACAAGGGTTGGAAGGAAAGTGCTTCTTATATGTTACTGTTTGATCATATTCAAGATTACATTTCAACTGCAACTTCAGTCACTCTTTTCTTCTCTTACCATCCAATCTTTCAGTGGCAGCCCCCAGATCAACAGCAGACGATGATGATACATCTGAAGAACTTATGTATACATCTGAAGAACTCATGTATAGTAAATACCAGCCTCTGCTCAAAAGTTTTACTTATGAAATATGTAAATATGCAAGTCTGGTTAAAACACCAGCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

160

Amino Acids

18.39

Weight (kDa)

8.26

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11060
fragaria_vesca	FvH4_4g00740 FvH4_6g07030 FvH4_6g07030
malus_domestica	MD04G1196700.v1.1 MD12G1209600.v1.1
prunus_persica	Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1
pyrus_communis	pycom12g19690
rosa_chinensis	RchiOBHm_Chr1g0345881 RchiOBHm_Chr2g0130211 RchiOBHm_Chr3g0456561 RchiOBHm_Chr3g0481651 RchiOBHm_Chr4g0404121 RchiOBHm_Chr4g0439671 RchiOBHm_Chr6g0253121
rosa_laevigata	RLG00000000940 RLG00000007307 RLG00000025293
rosa_multiflora	Rmu_sc0002607.1_g000003 Rmu_sc0017908.1_g000012
rosa_roxburghii	Rroxscaffold_2G00133280 Rroxscaffold_4G00309030 Rroxscaffold_4G00314410 Rroxscaffold_5G00340470 Rroxscaffold_5G00380600 Rroxscaffold_6G00422620
rosa_rugosa	Rorug03G0013900 Rorug03G0013900
rosa_samantha	Rh1CG068600 Rh3AG074700 Rh3BG076400 Rh3DG078200 Rh5AG110200 Rh5DG213600 Rh7DG365300
rosa_wichuraiana	Rw3G006390 Rw3G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	379
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	173, 186
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	4 cut(s)	135, 270, 386, 407
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	175, 188
AgsI	TTSAA	4 cut(s)	52, 148, 263, 276
AluBI	AGCT	3 cut(s)	15, 48, 475
AluI	AGCT	3 cut(s)	15, 48, 475
Alw21I	GWGCWC	1 cut(s)	213
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	2 cut(s)	173, 186
AlwNI	CAGNNNCTG	1 cut(s)	417
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	213
BaeI	ACNNNNGTAYC	2 cut(s)	52, 85
BamHI	GGATCC	1 cut(s)	178
BarI	GAAGNNNNNNTAC	2 cut(s)	44, 76
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	1 cut(s)	318
BclI	TGATCA	1 cut(s)	253
BfmI	CTRYAG	1 cut(s)	16
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 188
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	175, 188
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	175, 188
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	178, 253, 337
BspACI	CCGC	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	2 cut(s)	173, 186
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	178, 253, 337
BssNAI	GTATAC	1 cut(s)	380
BssT1I	CCWWGG	1 cut(s)	169
Bst1107I	GTATAC	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	83, 249
BstC8I	GCNNGC	2 cut(s)	38, 165
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	3 cut(s)	181, 256, 340
BstMBI	GATC	3 cut(s)	178, 253, 337
BstSFI	CTRYAG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BstZ17I	GTATAC	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	2 cut(s)	88, 329
Cac8I	GCNNGC	2 cut(s)	38, 165
CaiI	CAGNNNCTG	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	2 cut(s)	10, 396
CviJI	RGCY	7 cut(s)	15, 48, 72, 167, 331, 414, 475
CviKI_1	RGCY	7 cut(s)	15, 48, 72, 167, 331, 414, 475
CviQI	GTAC	1 cut(s)	61
DpnI	GATC	3 cut(s)	180, 255, 339
DpnII	GATC	3 cut(s)	178, 253, 337
Eco130I	CCWWGG	1 cut(s)	169
Eco57I	CTGAAG	4 cut(s)	135, 270, 386, 407
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	2 cut(s)	13, 399
FalI	AAGNNNNNCTT	4 cut(s)	220, 252, 417, 449
FatI	CATG	2 cut(s)	9, 395
FbaI	TGATCA	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	329
Hin1II	CATG	2 cut(s)	13, 399
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	46
HpaI	GTTAAC	1 cut(s)	7
Hpy166II	GTNNAC	3 cut(s)	7, 211, 380
Hpy188I	TCNGA	2 cut(s)	366, 387
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	3 cut(s)	7, 211, 380
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	2 cut(s)	83, 249
HpyCH4V	TGCA	4 cut(s)	163, 211, 281, 454
Hsp92II	CATG	2 cut(s)	13, 399
Ksp22I	TGATCA	1 cut(s)	253
KspAI	GTTAAC	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	178, 253, 337
LpnPI	CCDG	4 cut(s)	22, 348, 424, 445
Lsp1109I	GCAGC	1 cut(s)	340
MaeIII	GTNAC	3 cut(s)	83, 243, 289
MalI	GATC	3 cut(s)	180, 255, 339
MboI	GATC	3 cut(s)	178, 253, 337
MboII	GAAGA	5 cut(s)	128, 131, 292, 379, 400
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	2 cut(s)	105, 130
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	2 cut(s)	180, 425
MseI	TTAA	2 cut(s)	6, 464
MspA1I	CMGCKG	1 cut(s)	29
NdeII	GATC	3 cut(s)	178, 253, 337
NlaIII	CATG	2 cut(s)	13, 399
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	2 cut(s)	83, 289
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	180
PstNI	CAGNNNCTG	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	6, 464
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	3 cut(s)	178, 253, 337
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	4 cut(s)	17, 50, 175, 477
SfcI	CTRYAG	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	2 cut(s)	105, 130
SsiI	CCGC	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	83, 249
TasI	AATT	2 cut(s)	105, 130
Tru1I	TTAA	2 cut(s)	6, 464
Tru9I	TTAA	2 cut(s)	6, 464
TscAI	CASTG	2 cut(s)	88, 329
TseFI	GTSAC	2 cut(s)	83, 289
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	2 cut(s)	83, 289
TspDTI	ATGAA	1 cut(s)	452
TspRI	CASTG	2 cut(s)	88, 329
Van91I	CCANNNNNTGG	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.