RLG00000007307

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002605
Physical Location & Seq
Reverse (-)
15611739 .. 15616791
5053 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007307

Sequence Viewer

Length: 546 bp
ATGGTTTTGGGCTACCTTATTGCCTCAGGGATTTCTGGCCTGAGGTTTGACTGTGGCGGCGGCGTAGTTCGAGATCTTTCTTCTCTACGCCATGGCGGCCATGGACATCATCTCGAGGGAGGCGATTCACAACGTGAGGCGTTGTGGCTCTGGCTTGCTTGCGGCGGCATGAAGTTGCGACGAGTTTTGGTGTGTACAGTAGTGCTGCACAAGGAAGGGATGATTGGAATGGGTTGGGCCACATGTGGACCTTGGAAAGGAGTCGAGGTACCTCCCTCTGCCGAAAAACCAAGATTGAATTCACAGAAACACAAGATTGGGAGGTCATCAACCAAGCCTGGAGCTGAATTCAAGCAGAAATCTGTTCACACTGTCCAATTTAGGTACATATACTGCTTCTCAGCTGGTGTTTATCTCAAATCTGATCAATTGCCTCACTTTGAGCTCAAGTACTTTGATGATACTCTTCCAGCTCAATTATTGTGGATCTGCTCTATGTTAAGGTTTCGTGGCCATAGGAGGTTAGTATCCAGATTCTTGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.37

Weight (kDa)

9.85

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 268
AccB1I GGYRCC 1 cut(s) 268
AciI CCGC 6 cut(s) 57, 60, 96, 162, 165, 541
AclWI GGATC 1 cut(s) 494
AcoI YGGCCR 2 cut(s) 97, 511
AcsI RAATTY 2 cut(s) 298, 347
AdeI CACNNNGTG 1 cut(s) 134
AfaI GTAC 4 cut(s) 196, 270, 386, 452
AfiI CCNNNNNNNGG 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 242
AgsI TTSAA 2 cut(s) 298, 352
AjnI CCWGG 1 cut(s) 337
AjuI GAANNNNNNNTTGG 4 cut(s) 207, 239, 283, 315
AluBI AGCT 4 cut(s) 344, 404, 445, 473
AluI AGCT 4 cut(s) 344, 404, 445, 473
Alw21I GWGCWC 1 cut(s) 447
AlwI GGATC 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 4 cut(s) 37, 97, 237, 511
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 2 cut(s) 298, 347
Asp718I GGTACC 1 cut(s) 268
AspS9I GGNCC 2 cut(s) 237, 248
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 1 cut(s) 248
AxyI CCTNAGG 2 cut(s) 25, 41
BalI TGGCCA 1 cut(s) 513
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 339
BciVI GTATCC 1 cut(s) 538
BclI TGATCA 1 cut(s) 424
BfuI GTATCC 1 cut(s) 538
BglI GCCNNNNNGGC 1 cut(s) 96
BglII AGATCT 1 cut(s) 73
BisI GCNGC 6 cut(s) 58, 61, 97, 163, 166, 206
BlsI GCNGC 6 cut(s) 59, 62, 98, 164, 167, 207
BmcAI AGTACT 1 cut(s) 452
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 1 cut(s) 248
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 237, 248
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 339
BpmI CTGGAG 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 431
BsaJI CCNNGG 3 cut(s) 91, 100, 251
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse21I CCTNAGG 2 cut(s) 25, 41
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 91, 100, 251
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 3 cut(s) 32, 39, 414
BseXI GCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 191
BshFI GGCC 4 cut(s) 39, 99, 239, 513
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 447
BsiHKCI CYCGRG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 257
BsnI GGCC 4 cut(s) 39, 99, 239, 513
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 447
Bsp1407I TGTACA 1 cut(s) 194
Bsp143I GATC 3 cut(s) 73, 424, 486
Bsp19I CCATGG 2 cut(s) 91, 100
BspACI CCGC 6 cut(s) 57, 60, 96, 162, 165, 541
BspANI GGCC 4 cut(s) 39, 99, 239, 513
BspCNI CTCAG 3 cut(s) 33, 38, 413
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 268
BsrGI TGTACA 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 91, 100, 251
BssMI GATC 3 cut(s) 73, 424, 486
BssT1I CCWWGG 3 cut(s) 91, 100, 251
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 3 cut(s) 53, 199, 373
Bst6I CTCTTC 1 cut(s) 471
BstAUI TGTACA 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 156, 160
BstDEI CTNAG 3 cut(s) 25, 41, 400
BstDSI CCRYGG 2 cut(s) 91, 100
BstENI CCTNNNNNAGG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 3 cut(s) 76, 427, 489
BstMBI GATC 3 cut(s) 73, 424, 486
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 192
BstX2I RGATCY 2 cut(s) 73, 486
BstYI RGATCY 2 cut(s) 73, 486
Bsu36I CCTNAGG 2 cut(s) 25, 41
BsuI GTATCC 1 cut(s) 538
BsuRI GGCC 4 cut(s) 39, 99, 239, 513
BtgI CCRYGG 2 cut(s) 91, 100
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 2 cut(s) 156, 160
Cfr13I GGNCC 2 cut(s) 237, 248
Csp6I GTAC 4 cut(s) 195, 269, 385, 451
CspCI CAANNNNNGTGG 2 cut(s) 464, 499
CviAII CATG 4 cut(s) 92, 101, 169, 243
CviQI GTAC 4 cut(s) 195, 269, 385, 451
DdeI CTNAG 3 cut(s) 25, 41, 400
DpnI GATC 3 cut(s) 75, 426, 488
DpnII GATC 3 cut(s) 73, 424, 486
DraIII CACNNNGTG 1 cut(s) 134
EaeI YGGCCR 2 cut(s) 97, 511
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 3 cut(s) 91, 100, 251
Eco24I GRGCYC 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 445
Eco81I CCTNAGG 2 cut(s) 25, 41
Eco88I CYCGRG 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 445
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoRI GAATTC 2 cut(s) 298, 347
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 3 cut(s) 91, 100, 251
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 3 cut(s) 91, 100, 251
FaeI CATG 4 cut(s) 95, 104, 172, 246
FaiI YATR 8 cut(s) 93, 102, 170, 244, 389, 391, 497, 516
FatI CATG 4 cut(s) 91, 100, 168, 242
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 6 cut(s) 58, 61, 97, 163, 166, 206
FokI GGATG 1 cut(s) 232
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 6 cut(s) 58, 61, 97, 163, 166, 206
GluI GCNGC 6 cut(s) 58, 61, 97, 163, 166, 206
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 4 cut(s) 39, 99, 239, 513
Hin1II CATG 4 cut(s) 95, 104, 172, 246
HinfI GANTC 3 cut(s) 125, 261, 534
Hpy166II GTNNAC 3 cut(s) 195, 248, 367
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 3 cut(s) 71, 113, 531
Hpy8I GTNNAC 3 cut(s) 195, 248, 367
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 3 cut(s) 53, 199, 373
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 3 cut(s) 25, 41, 400
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 4 cut(s) 95, 104, 172, 246
KpnI GGTACC 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 3 cut(s) 73, 424, 486
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 8 cut(s) 12, 21, 53, 136, 324, 351, 390, 483
Lsp1109I GCAGC 1 cut(s) 192
MaeII ACGT 1 cut(s) 133
MalI GATC 3 cut(s) 75, 426, 488
MboI GATC 3 cut(s) 73, 424, 486
MboII GAAGA 2 cut(s) 72, 458
MfeI CAATTG 1 cut(s) 428
MflI RGATCY 2 cut(s) 73, 486
MhlI GDGCHC 1 cut(s) 447
MlsI TGGCCA 1 cut(s) 513
MluCI AATT 5 cut(s) 298, 347, 377, 428, 476
MluNI TGGCCA 1 cut(s) 513
MlyI GAGTC 1 cut(s) 270
Mox20I TGGCCA 1 cut(s) 513
MscI TGGCCA 1 cut(s) 513
MseI TTAA 1 cut(s) 500
Msp20I TGGCCA 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 404
MspR9I CCNGG 1 cut(s) 339
MunI CAATTG 1 cut(s) 428
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 96
NcoI CCATGG 2 cut(s) 91, 100
NdeII GATC 3 cut(s) 73, 424, 486
NlaIII CATG 4 cut(s) 95, 104, 172, 246
NlaIV GGNNCC 1 cut(s) 270
NspI RCATGY 1 cut(s) 246
PaeR7I CTCGAG 1 cut(s) 113
PciI ACATGT 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 2 cut(s) 125, 534
PkrI GCNGC 6 cut(s) 59, 62, 98, 164, 167, 207
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PscI ACATGT 1 cut(s) 242
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 2 cut(s) 237, 248
PsuI RGATCY 2 cut(s) 73, 486
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 4 cut(s) 196, 270, 386, 452
RsaNI GTAC 4 cut(s) 195, 269, 385, 451
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 6 cut(s) 58, 61, 97, 163, 166, 206
Sau3AI GATC 3 cut(s) 73, 424, 486
Sau96I GGNCC 2 cut(s) 237, 248
ScaI AGTACT 1 cut(s) 452
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 1 cut(s) 447
Sfr274I CTCGAG 1 cut(s) 113
SinI GGWCC 1 cut(s) 248
SlaI CTCGAG 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 113, 446
SmoI CTYRAG 2 cut(s) 113, 446
Sse9I AATT 5 cut(s) 298, 347, 377, 428, 476
SsiI CCGC 6 cut(s) 57, 60, 96, 162, 165, 541
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 3 cut(s) 91, 100, 251
TaaI ACNGT 3 cut(s) 53, 199, 373
TaiI ACGT 1 cut(s) 136
TaqI TCGA 3 cut(s) 70, 114, 264
TasI AATT 5 cut(s) 298, 347, 377, 428, 476
TatI WGTACW 2 cut(s) 194, 450
TauI GCSGC 5 cut(s) 60, 63, 99, 165, 168
TfiI GAWTC 2 cut(s) 125, 534
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TscAI CASTG 1 cut(s) 376
TseI GCWGC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 248
XagI CCTNNNNNAGG 1 cut(s) 255
XapI RAATTY 2 cut(s) 298, 347
XceI RCATGY 1 cut(s) 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XhoI CTCGAG 1 cut(s) 113
ZrmI AGTACT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.