Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002605

Physical Location & Seq

Genomic Coordinates Reverse (-)

21432287 .. 21434658

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g19690.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAGTTCGGCCGCTGCGCGATTCGCCAAGTTTATGCGAGTCTCCGTTCCTTCCTCGCCCACATCCTTACTCGCAGTGGGTGTGCAAAGAAGCTCAAAATTGTGGTGCTCAAGCATCCCATCTGACTCTGACATTGGCAATGATGACACAAAGAACAATGGGGCAGAAGATGGTTTTGACGACTTTATTGGTGCGAAGAAAGATGTGAATTTGCAACCCCAAGGAGTTGATCCCAGGAGGGGCTGGGGATTTCGTGGTGTGCACAAGGCAATTATCTGTGGAAAAGTTGGGCAAGCCCCTGTGCAAAAGATTTTGAGGAATGGTCGAACTGTAACCATCTTCACGGTTGGGACAGGAGGCATGTTTGACCAAAGGGTAATGGGAGCAAAGGACTTACCAAGACCTGCTCAATGGCATCGAATTGCTGTGCATAATGAAACACTTGGGGCTTATGCGGTTAAACAATTGGTTAAGAATGCATCAATCTATGTCGAGGGTGACATTGAAACTAGAGTTTACAATGACAGCATCAATGGTGAAGTGAAACATATTCCAGAGATATGCATTCGTCACGATGGGAAGCTTCGTCTTATAAAGACTGGAGAAAGCATAAGCAGTATATCGTTGGATGATCTGCGAGAAGATTTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

218

Amino Acids

23.7

Weight (kDa)

8.99

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11060
fragaria_vesca	FvH4_4g00740 FvH4_6g07030 FvH4_6g07030
malus_domestica	MD04G1196700.v1.1 MD12G1209600.v1.1
prunus_persica	Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1
pyrus_communis	pycom12g19690
rosa_chinensis	RchiOBHm_Chr1g0345881 RchiOBHm_Chr2g0130211 RchiOBHm_Chr3g0456561 RchiOBHm_Chr3g0481651 RchiOBHm_Chr4g0404121 RchiOBHm_Chr4g0439671 RchiOBHm_Chr6g0253121
rosa_laevigata	RLG00000000940 RLG00000007307 RLG00000025293
rosa_multiflora	Rmu_sc0002607.1_g000003 Rmu_sc0017908.1_g000012
rosa_roxburghii	Rroxscaffold_2G00133280 Rroxscaffold_4G00309030 Rroxscaffold_4G00314410 Rroxscaffold_5G00340470 Rroxscaffold_5G00380600 Rroxscaffold_6G00422620
rosa_rugosa	Rorug03G0013900 Rorug03G0013900
rosa_samantha	Rh1CG068600 Rh3AG074700 Rh3BG076400 Rh3DG078200 Rh5AG110200 Rh5DG213600 Rh7DG365300
rosa_wichuraiana	Rw3G006390 Rw3G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	593
Acc36I	ACCTGC	1 cut(s)	412
AccII	CGCG	1 cut(s)	19
AciI	CCGC	2 cut(s)	12, 455
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	93, 583
AluI	AGCT	2 cut(s)	93, 583
Alw21I	GWGCWC	2 cut(s)	110, 264
Alw26I	GTCTC	1 cut(s)	46
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	9
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	509, 548
BaeGI	GKGCMC	1 cut(s)	264
Bbv12I	GWGCWC	2 cut(s)	110, 264
BccI	CCATC	4 cut(s)	127, 164, 344, 569
BciT130I	CCWGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	510
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	2 cut(s)	12, 15
BlsI	GCNGC	2 cut(s)	13, 16
Bme1390I	CCNGG	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	4 cut(s)	123, 424, 488, 537
BpmI	CTGGAG	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	220, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	220, 233
BseGI	GGATG	3 cut(s)	62, 114, 634
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	604
BseSI	GKGCMC	1 cut(s)	264
BseX3I	CGGCCG	1 cut(s)	9
BseYI	CCCAGC	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	19
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	2 cut(s)	110, 264
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	2 cut(s)	481, 564
BsnI	GGCC	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	110, 264
Bsp143I	GATC	2 cut(s)	229, 631
BspACI	CCGC	2 cut(s)	12, 455
BspANI	GGCC	1 cut(s)	11
BspFNI	CGCG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	220, 233
BssMI	GATC	2 cut(s)	229, 631
BssT1I	CCWWGG	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	331, 346
BstC8I	GCNNGC	1 cut(s)	294
BstF5I	GGATG	3 cut(s)	62, 114, 634
BstFNI	CGCG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	2 cut(s)	232, 634
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	2 cut(s)	229, 631
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	19
BstZI	CGGCCG	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	62, 114, 634
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	1 cut(s)	19
CviAII	CATG	1 cut(s)	361
CviJI	RGCY	6 cut(s)	11, 93, 243, 296, 449, 583
CviKI_1	RGCY	6 cut(s)	11, 93, 243, 296, 449, 583
DpnI	GATC	2 cut(s)	231, 633
DpnII	GATC	2 cut(s)	229, 631
EaeI	YGGCCR	1 cut(s)	9
EagI	CGGCCG	1 cut(s)	9
EclXI	CGGCCG	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	220
Eco52I	CGGCCG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	220
EcoT22I	ATGCAT	2 cut(s)	481, 566
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	1 cut(s)	364
FalI	AAGNNNNNCTT	1 cut(s)	633
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	1 cut(s)	360
Fnu4HI	GCNGC	2 cut(s)	12, 15
FokI	GGATG	3 cut(s)	49, 101, 641
Fsp4HI	GCNGC	2 cut(s)	12, 15
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	12, 15
GsaI	CCCAGC	1 cut(s)	247
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	1 cut(s)	364
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	3 cut(s)	21, 39, 125
HphI	GGTGA	2 cut(s)	509, 548
Hpy166II	GTNNAC	2 cut(s)	262, 517
Hpy188I	TCNGA	2 cut(s)	124, 130
Hpy188III	TCNNGA	2 cut(s)	554, 572
Hpy8I	GTNNAC	2 cut(s)	262, 517
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	2 cut(s)	331, 346
HpyCH4V	TGCA	7 cut(s)	85, 214, 262, 304, 430, 479, 564
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	364
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	2 cut(s)	229, 631
LmnI	GCTCC	1 cut(s)	383
LpnPI	CCDG	8 cut(s)	220, 229, 247, 312, 339, 417, 567, 585
LweI	GCATC	4 cut(s)	123, 424, 488, 537
MaeI	CTAG	1 cut(s)	510
MaeIII	GTNAC	3 cut(s)	331, 497, 569
MalI	GATC	2 cut(s)	231, 633
MboI	GATC	2 cut(s)	229, 631
MboII	GAAGA	4 cut(s)	179, 208, 331, 653
MfeI	CAATTG	1 cut(s)	464
MhlI	GDGCHC	2 cut(s)	110, 264
MluCI	AATT	5 cut(s)	98, 208, 270, 420, 464
MlyI	GAGTC	2 cut(s)	48, 119
MmeI	TCCRAC	1 cut(s)	606
MnlI	CCTC	5 cut(s)	64, 231, 309, 350, 487
Mph1103I	ATGCAT	2 cut(s)	481, 566
MseI	TTAA	2 cut(s)	459, 471
MspA1I	CMGCKG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	235
MunI	CAATTG	1 cut(s)	464
Mva1269I	GAATGC	2 cut(s)	481, 564
MvaI	CCWGG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	2 cut(s)	229, 631
NlaIII	CATG	1 cut(s)	364
NmuCI	GTSAC	2 cut(s)	497, 569
NsiI	ATGCAT	2 cut(s)	481, 566
NspI	RCATGY	1 cut(s)	364
PctI	GAATGC	2 cut(s)	481, 564
PfeI	GAWTC	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	13, 16
PleI	GAGTC	2 cut(s)	47, 119
PpsI	GAGTC	2 cut(s)	47, 119
PsiI	TTATAA	1 cut(s)	593
Psp6I	CCWGG	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	459, 471
SatI	GCNGC	2 cut(s)	12, 15
Sau3AI	GATC	2 cut(s)	229, 631
SchI	GAGTC	2 cut(s)	48, 119
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	2 cut(s)	110, 264
SetI	ASST	3 cut(s)	95, 406, 585
SfaNI	GCATC	4 cut(s)	123, 424, 488, 537
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	5 cut(s)	98, 208, 270, 420, 464
SsiI	CCGC	2 cut(s)	12, 455
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	331, 346
TaqI	TCGA	3 cut(s)	325, 418, 492
TasI	AATT	5 cut(s)	98, 208, 270, 420, 464
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	21
Tru1I	TTAA	2 cut(s)	459, 471
Tru9I	TTAA	2 cut(s)	459, 471
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	2 cut(s)	497, 569
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	2 cut(s)	497, 569
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	81
VneI	GTGCAC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	1 cut(s)	364
XspI	CTAG	1 cut(s)	510
Zsp2I	ATGCAT	2 cut(s)	481, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.