RchiOBHm_Chr3g0456561

Single-stranded DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002605
Physical Location & Seq
Forward (+)
6055207 .. 6057752
2546 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42338

Sequence Viewer

Length: 642 bp
ATGAGTTCACTCGCTGCGAGATTTTCCAAGTTCATCAGAGTCTCTGTTCCTTCCTCGCAAACTTCCTCACTCGTAGGCGGGCAAAGAAGCTCGAAGTTATGGTACTCGAGCGGCTCAATCGACAGTGACACTAATGACGCAAAACAACTTGGTGCCGAAGAAGATATTGACGATTTTCTTGGTGGCTTGAAAGATACAAATGTGCAAGCCCAAGGTGTGGATCCCAAGAGGGGTTGGGGATTTCGCGGTGTGCACAAGGCAATTATTTGTGGAAGAGTTGGACAATCCCCAGTGCAGAAGATCTTGAGGAATGGCCGAACTGTAACCATATTCACTGTTGGGACTGGGGGCATGTTTGACCAGAGATTACTGGGAAAGGACTTGCCCAGACCTGCTCAGTGGCACCGAATTGCTGTGCATAATGACGCACTTGGGGCTTATGCAGTTAAACAATTTGTTAAAAATTCATCAGTTTATGTTGAGGGTGACATCGAAACTAGAGTTTACAATGATAGCATCAATGGTGAAGTTAAGAATATTCCAGAGATCTGCATTCGTCACGATGGGAAGATCCGTCTTATAAGGAGTGGAGAAAGCATCAGCAGTATGTCCTTGGATGATCTGCGAGAAGACTTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SSB

Protein Analysis

213

Amino Acids

23.35

Weight (kDa)

8.88

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSB PF00436 84 - 186 1.1e-18 Single-strand binding protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
Acc36I ACCTGC 1 cut(s) 400
AccB1I GGYRCC 2 cut(s) 152, 402
AccB7I CCANNNNNTGG 1 cut(s) 217
AccBSI CCGCTC 1 cut(s) 111
AccII CGCG 1 cut(s) 246
AciI CCGC 3 cut(s) 78, 111, 246
AclWI GGATC 3 cut(s) 215, 228, 565
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 1 cut(s) 463
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 217, 230
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 46
Alw44I GTGCAC 1 cut(s) 251
AlwI GGATC 3 cut(s) 215, 228, 565
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 1 cut(s) 313
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 463
AsuHPI GGTGA 2 cut(s) 497, 536
AvaI CYCGRG 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 255
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BamHI GGATCC 1 cut(s) 220
BanI GGYRCC 2 cut(s) 152, 402
BarI GAAGNNNNNNTAC 2 cut(s) 86, 118
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 255
BccI CCATC 1 cut(s) 557
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 400
BglII AGATCT 2 cut(s) 300, 546
BisI GCNGC 2 cut(s) 15, 112
BlsI GCNGC 2 cut(s) 16, 113
BmeT110I CYCGRG 1 cut(s) 106
BmiI GGNNCC 3 cut(s) 154, 222, 404
BmrI ACTGGG 3 cut(s) 284, 354, 380
BmsI GCATC 2 cut(s) 525, 606
BmuI ACTGGG 3 cut(s) 284, 354, 380
BpiI GAAGAC 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 211, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 230
Bse1I ACTGG 3 cut(s) 290, 349, 375
BseDI CCNNGG 2 cut(s) 211, 612
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 2 cut(s) 217, 230
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 3 cut(s) 290, 349, 375
BseSI GKGCMC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 315
BshNI GGYRCC 2 cut(s) 152, 402
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 217, 230
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 355
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 5 cut(s) 220, 300, 546, 570, 619
BspACI CCGC 3 cut(s) 78, 111, 246
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 409
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 3 cut(s) 154, 222, 404
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 3 cut(s) 215, 228, 565
BspT107I GGYRCC 2 cut(s) 152, 402
BsrBI CCGCTC 1 cut(s) 111
BsrI ACTGG 3 cut(s) 290, 349, 375
BssECI CCNNGG 2 cut(s) 211, 612
BssMI GATC 5 cut(s) 220, 300, 546, 570, 619
BssT1I CCWWGG 2 cut(s) 211, 612
Bst4CI ACNGT 3 cut(s) 125, 322, 337
Bst6I CTCTTC 1 cut(s) 268
BstC8I GCNNGC 2 cut(s) 80, 207
BstDEI CTNAG 2 cut(s) 396, 639
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 5 cut(s) 223, 303, 549, 573, 622
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 5 cut(s) 220, 300, 546, 570, 619
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstNSI RCATGY 1 cut(s) 355
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 1 cut(s) 246
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 4 cut(s) 220, 300, 546, 570
BstYI RGATCY 4 cut(s) 220, 300, 546, 570
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 622
BtsIMutI CAGTG 4 cut(s) 130, 297, 333, 404
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 2 cut(s) 80, 207
CseI GACGC 2 cut(s) 146, 434
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 352
CviJI RGCY 6 cut(s) 90, 114, 186, 209, 315, 437
CviKI_1 RGCY 6 cut(s) 90, 114, 186, 209, 315, 437
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 396, 639
DpnI GATC 5 cut(s) 222, 302, 548, 572, 621
DpnII GATC 5 cut(s) 220, 300, 546, 570, 619
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco130I CCWWGG 2 cut(s) 211, 612
Eco88I CYCGRG 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 211, 612
ErhI CCWWGG 2 cut(s) 211, 612
FaeI CATG 1 cut(s) 355
FaiI YATR 8 cut(s) 100, 329, 353, 420, 441, 477, 581, 608
FaqI GGGAC 1 cut(s) 355
FatI CATG 1 cut(s) 351
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 2 cut(s) 15, 112
FokI GGATG 1 cut(s) 629
Fsp4HI GCNGC 2 cut(s) 15, 112
FspBI CTAG 1 cut(s) 498
GluI GCNGC 2 cut(s) 15, 112
HaeIII GGCC 1 cut(s) 315
HgaI GACGC 2 cut(s) 146, 434
Hin1II CATG 1 cut(s) 355
HinfI GANTC 1 cut(s) 39
HphI GGTGA 2 cut(s) 497, 536
Hpy166II GTNNAC 3 cut(s) 8, 253, 505
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 3 cut(s) 304, 542, 560
Hpy8I GTNNAC 3 cut(s) 8, 253, 505
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 3 cut(s) 125, 322, 337
HpyCH4V TGCA 6 cut(s) 205, 253, 295, 418, 443, 552
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpyF3I CTNAG 2 cut(s) 396, 639
Hsp92II CATG 1 cut(s) 355
Kzo9I GATC 5 cut(s) 220, 300, 546, 570, 619
LpnPI CCDG 7 cut(s) 303, 330, 356, 374, 400, 405, 555
LweI GCATC 2 cut(s) 525, 606
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 4 cut(s) 125, 322, 485, 557
MalI GATC 5 cut(s) 222, 302, 548, 572, 621
MbiI CCGCTC 1 cut(s) 111
MboI GATC 5 cut(s) 220, 300, 546, 570, 619
MboII GAAGA 6 cut(s) 170, 173, 285, 310, 580, 641
MflI RGATCY 4 cut(s) 220, 300, 546, 570
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 4 cut(s) 261, 408, 452, 463
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 5 cut(s) 64, 76, 222, 300, 475
MseI TTAA 3 cut(s) 447, 459, 531
Mva1269I GAATGC 1 cut(s) 552
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 434
NdeII GATC 5 cut(s) 220, 300, 546, 570, 619
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 3 cut(s) 154, 222, 404
NmuCI GTSAC 3 cut(s) 125, 485, 557
NspI RCATGY 1 cut(s) 355
PaeR7I CTCGAG 1 cut(s) 106
PctI GAATGC 1 cut(s) 552
PflMI CCANNNNNTGG 1 cut(s) 217
PkrI GCNGC 2 cut(s) 16, 113
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PsiI TTATAA 1 cut(s) 581
PspN4I GGNNCC 3 cut(s) 154, 222, 404
PspXI VCTCGAGB 1 cut(s) 106
PsuI RGATCY 4 cut(s) 220, 300, 546, 570
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 447, 459, 531
SatI GCNGC 2 cut(s) 15, 112
Sau3AI GATC 5 cut(s) 220, 300, 546, 570, 619
SchI GAGTC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 255
SetI ASST 4 cut(s) 92, 217, 394, 640
SfaNI GCATC 2 cut(s) 525, 606
Sfr274I CTCGAG 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 106
SmlI CTYRAG 2 cut(s) 106, 304
SmoI CTYRAG 2 cut(s) 106, 304
Sse9I AATT 4 cut(s) 261, 408, 452, 463
SsiI CCGC 3 cut(s) 78, 111, 246
SspI AATATT 1 cut(s) 538
SspMI CTAG 1 cut(s) 498
StyI CCWWGG 2 cut(s) 211, 612
TaaI ACNGT 3 cut(s) 125, 322, 337
TaqI TCGA 4 cut(s) 92, 107, 120, 492
TasI AATT 4 cut(s) 261, 408, 452, 463
TauI GCSGC 1 cut(s) 114
Tru1I TTAA 3 cut(s) 447, 459, 531
Tru9I TTAA 3 cut(s) 447, 459, 531
TscAI CASTG 4 cut(s) 130, 297, 340, 404
TseFI GTSAC 3 cut(s) 125, 485, 557
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 3 cut(s) 125, 485, 557
TspDTI ATGAA 2 cut(s) 22, 456
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 4 cut(s) 130, 297, 340, 404
Van91I CCANNNNNTGG 1 cut(s) 217
VneI GTGCAC 1 cut(s) 251
XapI RAATTY 1 cut(s) 463
XceI RCATGY 1 cut(s) 355
XhoI CTCGAG 1 cut(s) 106
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.