Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002605

Physical Location & Seq

Genomic Coordinates Reverse (-)

8323354 .. 8332763

Gene Structure 9410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAAACAAAACTTGCCGCTGGATTGCATGAATATCTAGGTGTCTGTGCCCACAGGAAAGGAGTCGAGGTACCTCCCTCTGGTACGCTCCCCAAAGCCATATCACCGATCAGGGGATCGCTTAATCCTATTCTCGCCTCCGCCGAAAAACCAAGATTGAATTCACAAAAGCACAAGATTGGGAGGTCATCAACCAAGCCTGGAGCTGAATTCAAGCAGAAATCTGTTCACACTGTCCAATTTAGGTACATATACTGCTCCTCAGCTGGTGTTTATCTCAAATCTGATCAATTGCCTCACTTTGAGGTCGGGCTTTTTCCCCAGTGGACATATACGATTTTGCTAGTTCATACCAATGTGCTGTGGTTCAATTTGAGAGTAGCTCCTTTTGTTCTCTGCTATGTTGGAGATATTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0001101 GO:0001871 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005840 GO:0005911 GO:0005975 GO:0005996 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0009991 GO:0010035 GO:0010287 GO:0010297 GO:0010319 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0030054 GO:0030246 GO:0030247 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032544 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042579 GO:0042631 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0048046 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

139

Amino Acids

15.5

Weight (kDa)

9.6

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11060
fragaria_vesca	FvH4_4g00740 FvH4_6g07030 FvH4_6g07030
malus_domestica	MD04G1196700.v1.1 MD12G1209600.v1.1
prunus_persica	Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1
pyrus_communis	pycom12g19690
rosa_chinensis	RchiOBHm_Chr1g0345881 RchiOBHm_Chr2g0130211 RchiOBHm_Chr3g0456561 RchiOBHm_Chr3g0481651 RchiOBHm_Chr4g0404121 RchiOBHm_Chr4g0439671 RchiOBHm_Chr6g0253121
rosa_laevigata	RLG00000000940 RLG00000007307 RLG00000025293
rosa_multiflora	Rmu_sc0002607.1_g000003 Rmu_sc0017908.1_g000012
rosa_roxburghii	Rroxscaffold_2G00133280 Rroxscaffold_4G00309030 Rroxscaffold_4G00314410 Rroxscaffold_5G00340470 Rroxscaffold_5G00380600 Rroxscaffold_6G00422620
rosa_rugosa	Rorug03G0013900 Rorug03G0013900
rosa_samantha	Rh1CG068600 Rh3AG074700 Rh3BG076400 Rh3DG078200 Rh5AG110200 Rh5DG213600 Rh7DG365300
rosa_wichuraiana	Rw3G006390 Rw3G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	70
AccB1I	GGYRCC	1 cut(s)	70
AciI	CCGC	2 cut(s)	18, 141
AclWI	GGATC	1 cut(s)	124
AcsI	RAATTY	2 cut(s)	160, 209
AfaI	GTAC	3 cut(s)	72, 85, 248
AfiI	CCNNNNNNNGG	2 cut(s)	80, 113
AgsI	TTSAA	3 cut(s)	160, 214, 370
AjnI	CCWGG	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	3 cut(s)	206, 266, 383
AluI	AGCT	3 cut(s)	206, 266, 383
AlwI	GGATC	1 cut(s)	124
ApoI	RAATTY	2 cut(s)	160, 209
Asp718I	GGTACC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	70
BbvCI	CCTCAGC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	286
BfaI	CTAG	2 cut(s)	38, 344
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	201
BmrI	ACTGGG	1 cut(s)	316
BmuI	ACTGGG	1 cut(s)	316
BplI	GAGNNNNNCTC	2 cut(s)	367, 399
BpmI	CTGGAG	1 cut(s)	222
Bpu10I	CCTNAGC	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 113
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	80, 113
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	250
BseSI	GKGCMC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	80, 113
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	3 cut(s)	108, 116, 286
BspACI	CCGC	2 cut(s)	18, 141
BspCNI	CTCAG	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	322
BssMI	GATC	3 cut(s)	108, 116, 286
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	262
BstKTI	GATC	3 cut(s)	111, 119, 289
BstMBI	GATC	3 cut(s)	108, 116, 286
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	231, 329
Csp6I	GTAC	3 cut(s)	71, 84, 247
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	6 cut(s)	98, 199, 206, 266, 313, 383
CviKI_1	RGCY	6 cut(s)	98, 199, 206, 266, 313, 383
CviQI	GTAC	3 cut(s)	71, 84, 247
DdeI	CTNAG	1 cut(s)	262
DpnI	GATC	3 cut(s)	110, 118, 288
DpnII	GATC	3 cut(s)	108, 116, 286
EciI	GGCGGA	1 cut(s)	130
EcoRI	GAATTC	2 cut(s)	160, 209
EcoRII	CCWGG	1 cut(s)	199
FaeI	CATG	1 cut(s)	32
FaiI	YATR	8 cut(s)	30, 101, 251, 253, 331, 333, 351, 402
FatI	CATG	1 cut(s)	28
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	38, 344
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	222
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	1 cut(s)	63
HphI	GGTGA	1 cut(s)	96
Hpy166II	GTNNAC	2 cut(s)	229, 327
Hpy188I	TCNGA	1 cut(s)	286
Hpy8I	GTNNAC	2 cut(s)	229, 327
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	1 cut(s)	28
HpyF3I	CTNAG	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	32
KpnI	GGTACC	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	108, 116, 286
LmnI	GCTCC	4 cut(s)	93, 203, 263, 388
LpnPI	CCDG	8 cut(s)	6, 40, 66, 97, 186, 213, 252, 335
MaeI	CTAG	2 cut(s)	38, 344
MalI	GATC	3 cut(s)	110, 118, 288
MboI	GATC	3 cut(s)	108, 116, 286
MfeI	CAATTG	1 cut(s)	290
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	5 cut(s)	160, 209, 239, 290, 370
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	8 cut(s)	61, 84, 88, 148, 177, 271, 298, 306
MseI	TTAA	2 cut(s)	123, 418
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	2 cut(s)	20, 266
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	108, 116, 286
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	3 cut(s)	72, 85, 248
RsaNI	GTAC	3 cut(s)	71, 84, 247
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	123, 418
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	3 cut(s)	108, 116, 286
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	9 cut(s)	43, 72, 76, 188, 208, 248, 268, 309, 385
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	5 cut(s)	160, 209, 239, 290, 370
SsiI	CCGC	2 cut(s)	18, 141
SspMI	CTAG	2 cut(s)	38, 344
StyD4I	CCNGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	66
TasI	AATT	5 cut(s)	160, 209, 239, 290, 370
TauI	GCSGC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	123, 418
Tru9I	TTAA	2 cut(s)	123, 418
TscAI	CASTG	2 cut(s)	238, 329
TspDTI	ATGAA	3 cut(s)	45, 338, 404
TspRI	CASTG	2 cut(s)	238, 329
XapI	RAATTY	2 cut(s)	160, 209
XspI	CTAG	2 cut(s)	38, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.