Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002605

Physical Location & Seq

Genomic Coordinates Forward (+)

30655296 .. 30665289

Gene Structure 9994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGCTGTATTACTGCGGTGGGCAGGCAAAGAAGCTCAAAGTTGTGCTACTCGAGCAGCTCAACCGACAGTGACACTAATGACACAAAGAAAGTTGGTGCTGAAGAGGATTTTGACAATTTTCTTAGGTGGCTTGAAAGATACGAAATGGAAGCCCAAGGTGTGGATCCCAAGAGGGTTGAGTCAATTAGTGACATACCGTCCGCAGTTGATTCCTCGAGTCATCGCAACTACTTGAGACGCAGCTGCTGCTTCCTCCATTTGTCGCTCATCGTCTTTCTCATCGGGTCGAATATTTGTGATTATAAGAGAAGGCACATGTTTGATTTTGTAGCAATCCTCTCCTCCTTCCCCAAACCTACTTTGCGGAATCTACCGGGCATCAAGTCAATTGTTAATTCCTTGAGGATATGTGATTATGATGGTCTGCAATTATCAACTAGTCCATTTCTAGAGAGGAATATGGAATTTCTTATTGAGTGCATGGATGATTTGTCAATGGAACAGCAGAAGGAAACGGTGAGGGAAGTCGGACAGGAGAAGAGCTCCCAAGTCACAGCAGTTGCCGCGGAAGAAAACAAAGAGAGAGGGTTGTCCGTGGCTCCGTGTGGGATGGAGTGTGAGATGGGCTGGGTAGAAAAGCCCAAAGATTGTAGACCGGGATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

222

Amino Acids

25.18

Weight (kDa)

5.25

Isoelectric Point (pI)

65.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11060
fragaria_vesca	FvH4_4g00740 FvH4_6g07030 FvH4_6g07030
malus_domestica	MD04G1196700.v1.1 MD12G1209600.v1.1
prunus_persica	Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1
pyrus_communis	pycom12g19690
rosa_chinensis	RchiOBHm_Chr1g0345881 RchiOBHm_Chr2g0130211 RchiOBHm_Chr3g0456561 RchiOBHm_Chr3g0481651 RchiOBHm_Chr4g0404121 RchiOBHm_Chr4g0439671 RchiOBHm_Chr6g0253121
rosa_laevigata	RLG00000000940 RLG00000007307 RLG00000025293
rosa_multiflora	Rmu_sc0002607.1_g000003 Rmu_sc0017908.1_g000012
rosa_roxburghii	Rroxscaffold_2G00133280 Rroxscaffold_4G00309030 Rroxscaffold_4G00314410 Rroxscaffold_5G00340470 Rroxscaffold_5G00380600 Rroxscaffold_6G00422620
rosa_rugosa	Rorug03G0013900 Rorug03G0013900
rosa_samantha	Rh1CG068600 Rh3AG074700 Rh3BG076400 Rh3DG078200 Rh5AG110200 Rh5DG213600 Rh7DG365300
rosa_wichuraiana	Rw3G006390 Rw3G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	655
AccII	CGCG	1 cut(s)	569
AciI	CCGC	5 cut(s)	17, 204, 367, 567, 569
AclWI	GGATC	2 cut(s)	161, 174
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	1 cut(s)	137
AhdI	GACNNNNNGTC	1 cut(s)	199
AhlI	ACTAGT	1 cut(s)	440
AluBI	AGCT	5 cut(s)	6, 36, 60, 246, 546
AluI	AGCT	5 cut(s)	6, 36, 60, 246, 546
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	2 cut(s)	161, 174
AlwNI	CAGNNNCTG	1 cut(s)	249
Ama87I	CYCGRG	2 cut(s)	52, 217
ApeKI	GCWGC	4 cut(s)	57, 243, 246, 249
ApoI	RAATTY	1 cut(s)	467
AsuC2I	CCSGG	2 cut(s)	378, 660
AsuHPI	GGTGA	1 cut(s)	532
AvaI	CYCGRG	2 cut(s)	52, 217
BamHI	GGATCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	4 cut(s)	69, 233, 236, 255
BccI	CCATC	3 cut(s)	416, 607, 619
BciVI	GTATCC	1 cut(s)	656
BcnI	CCSGG	2 cut(s)	378, 660
BcoDI	GTCTC	1 cut(s)	232
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	3 cut(s)	441, 452, 667
BfuI	GTATCC	1 cut(s)	656
BisI	GCNGC	5 cut(s)	58, 244, 247, 250, 567
BlsI	GCNGC	5 cut(s)	59, 245, 248, 251, 568
Bme1390I	CCNGG	2 cut(s)	378, 660
BmeRI	GACNNNNNGTC	1 cut(s)	199
BmeT110I	CYCGRG	2 cut(s)	52, 217
BmiI	GGNNCC	2 cut(s)	168, 603
BmrFI	CCNGG	2 cut(s)	378, 660
BmsI	GCATC	1 cut(s)	390
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpuEI	CTTGAG	2 cut(s)	256, 424
BpuMI	CCSGG	2 cut(s)	378, 660
BsaJI	CCNNGG	3 cut(s)	157, 567, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
BseDI	CCNNGG	3 cut(s)	157, 567, 597
BseGI	GGATG	2 cut(s)	493, 618
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	334
BseXI	GCAGC	4 cut(s)	69, 233, 236, 255
BseYI	CCCAGC	1 cut(s)	630
Bsh1236I	CGCG	1 cut(s)	569
BsiHKAI	GWGCWC	1 cut(s)	548
BsiHKCI	CYCGRG	2 cut(s)	52, 217
BsiSI	CCGG	2 cut(s)	377, 659
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	232
BsmBI	CGTCTC	1 cut(s)	232
BsoBI	CYCGRG	2 cut(s)	52, 217
Bsp1286I	GDGCHC	1 cut(s)	548
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	5 cut(s)	17, 204, 367, 567, 569
BspFNI	CGCG	1 cut(s)	569
BspLI	GGNNCC	2 cut(s)	168, 603
BspPI	GGATC	2 cut(s)	161, 174
BspQI	GCTCTTC	1 cut(s)	536
BssECI	CCNNGG	3 cut(s)	157, 567, 597
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	157
Bst4CI	ACNGT	3 cut(s)	71, 201, 520
Bst6I	CTCTTC	2 cut(s)	99, 536
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	2 cut(s)	567, 597
BstF5I	GGATG	2 cut(s)	493, 618
BstFNI	CGCG	1 cut(s)	569
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 249, 566
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	376, 658
BstUI	CGCG	1 cut(s)	569
BstV1I	GCAGC	4 cut(s)	69, 233, 236, 255
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	656
BtgI	CCRYGG	2 cut(s)	567, 597
BtgZI	GCGATG	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	493, 618
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	26
CaiI	CAGNNNCTG	1 cut(s)	249
Cfr42I	CCGCGG	1 cut(s)	570
CseI	GACGC	1 cut(s)	249
CviAII	CATG	2 cut(s)	319, 484
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DriI	GACNNNNNGTC	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	99, 536
Eam1105I	GACNNNNNGTC	1 cut(s)	199
EarI	CTCTTC	2 cut(s)	99, 536
Ecl136II	GAGCTC	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	548
Eco53kI	GAGCTC	1 cut(s)	546
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	2 cut(s)	52, 217
EcoICRI	GAGCTC	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	548
ErhI	CCWWGG	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	2 cut(s)	322, 487
FaiI	YATR	7 cut(s)	197, 306, 320, 412, 420, 464, 485
FatI	CATG	2 cut(s)	318, 483
FblI	GTMKAC	1 cut(s)	655
Fnu4HI	GCNGC	5 cut(s)	58, 244, 247, 250, 567
FokI	GGATG	2 cut(s)	500, 625
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	5 cut(s)	58, 244, 247, 250, 567
FspBI	CTAG	3 cut(s)	441, 452, 667
GluI	GCNGC	5 cut(s)	58, 244, 247, 250, 567
GsaI	CCCAGC	1 cut(s)	634
HapII	CCGG	2 cut(s)	377, 659
HgaI	GACGC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	322, 487
HinfI	GANTC	4 cut(s)	182, 212, 220, 370
HpaII	CCGG	2 cut(s)	377, 659
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	1 cut(s)	656
Hpy188I	TCNGA	1 cut(s)	533
Hpy188III	TCNNGA	1 cut(s)	452
Hpy8I	GTNNAC	1 cut(s)	656
HpyAV	CCTTC	3 cut(s)	306, 358, 505
HpyCH4III	ACNGT	3 cut(s)	71, 201, 520
HpyCH4V	TGCA	2 cut(s)	430, 483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 249, 566
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	322, 487
KspI	CCGCGG	1 cut(s)	570
Kzo9I	GATC	1 cut(s)	166
LguI	GCTCTTC	1 cut(s)	536
LmnI	GCTCC	2 cut(s)	551, 607
LpnPI	CCDG	4 cut(s)	10, 390, 521, 616
Lsp1109I	GCAGC	4 cut(s)	69, 233, 236, 255
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	3 cut(s)	441, 452, 667
MaeIII	GTNAC	3 cut(s)	71, 191, 553
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	3 cut(s)	116, 553, 584
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	548
MluCI	AATT	6 cut(s)	118, 186, 390, 397, 431, 467
MlyI	GAGTC	2 cut(s)	191, 229
MmeI	TCCRAC	1 cut(s)	511
MseI	TTAA	1 cut(s)	396
MspA1I	CMGCKG	2 cut(s)	246, 569
MspI	CCGG	2 cut(s)	377, 659
MspR9I	CCNGG	2 cut(s)	378, 660
MunI	CAATTG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	569
MwoI	GCNNNNNNNGC	3 cut(s)	54, 249, 566
NciI	CCSGG	2 cut(s)	378, 660
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	322, 487
NlaIV	GGNNCC	2 cut(s)	168, 603
NmuCI	GTSAC	3 cut(s)	71, 191, 553
NspI	RCATGY	1 cut(s)	322
PaeR7I	CTCGAG	2 cut(s)	52, 217
PciI	ACATGT	1 cut(s)	318
PciSI	GCTCTTC	1 cut(s)	536
PfeI	GAWTC	2 cut(s)	212, 370
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	5 cut(s)	59, 245, 248, 251, 568
PleI	GAGTC	2 cut(s)	190, 228
PpsI	GAGTC	2 cut(s)	190, 228
PscI	ACATGT	1 cut(s)	318
PsiI	TTATAA	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	548
PspFI	CCCAGC	1 cut(s)	630
PspN4I	GGNNCC	2 cut(s)	168, 603
PspXI	VCTCGAGB	2 cut(s)	52, 217
PstNI	CAGNNNCTG	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	548
SacII	CCGCGG	1 cut(s)	570
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	5 cut(s)	58, 244, 247, 250, 567
Sau3AI	GATC	1 cut(s)	166
SchI	GAGTC	2 cut(s)	191, 229
ScrFI	CCNGG	2 cut(s)	378, 660
SduI	GDGCHC	1 cut(s)	548
SetI	ASST	8 cut(s)	8, 38, 62, 131, 163, 248, 361, 548
SfaNI	GCATC	1 cut(s)	390
Sfr274I	CTCGAG	2 cut(s)	52, 217
Sfr303I	CCGCGG	1 cut(s)	570
SgrBI	CCGCGG	1 cut(s)	570
SlaI	CTCGAG	2 cut(s)	52, 217
SmlI	CTYRAG	4 cut(s)	52, 217, 235, 403
SmoI	CTYRAG	4 cut(s)	52, 217, 235, 403
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	6 cut(s)	118, 186, 390, 397, 431, 467
SsiI	CCGC	5 cut(s)	17, 204, 367, 567, 569
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	3 cut(s)	441, 452, 667
SstI	GAGCTC	1 cut(s)	548
StyD4I	CCNGG	2 cut(s)	376, 658
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	3 cut(s)	71, 201, 520
TaqI	TCGA	3 cut(s)	53, 218, 290
TasI	AATT	6 cut(s)	118, 186, 390, 397, 431, 467
TauI	GCSGC	1 cut(s)	569
TfiI	GAWTC	2 cut(s)	212, 370
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	3 cut(s)	71, 191, 553
TseI	GCWGC	4 cut(s)	57, 243, 246, 249
Tsp45I	GTSAC	3 cut(s)	71, 191, 553
TspGWI	ACGGA	2 cut(s)	586, 594
TspRI	CASTG	1 cut(s)	76
Van91I	CCANNNNNTGG	1 cut(s)	163
XapI	RAATTY	1 cut(s)	467
XbaI	TCTAGA	1 cut(s)	451
XceI	RCATGY	1 cut(s)	322
XhoI	CTCGAG	2 cut(s)	52, 217
XmiI	GTMKAC	1 cut(s)	655
XspI	CTAG	3 cut(s)	441, 452, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.