Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002605

Physical Location & Seq

Genomic Coordinates Forward (+)

8214438 .. 8215273

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000940

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTTGGCAAGGACTTGGTTGAAGTAGTTAGCACTATTAGCAAGGAAGTCGGAGGCAAGGAGGCAAGGAGGACTCCTGTGATCTTTTCCTCTCCTCCGGCGGCGTTGGCGGTTCTGTCTCGCTGTTGTTGTATTGTTTGCCGGATGGGAATGGTTTTGGGCTACCCTATTGGCTTAGGGATTTCTGGCCTGAGGTTTGACTATGGCGCCGGCGTAGTTCAGGATCTTTCTTCTCTACGCCATGGAGGCCATGGACATCATCTCGAGGGAGTCGATTCAAGGCGTGAGGTGGGTTTCGGCGGCGAGGATGGCTACTTCGGGGGGATCCACGTTTGGCTGGCTTGCTCAGGCTTCATCGGTGGCTTTCTGGTGATTGTTCCTTCAGGCGTCGTGGCTCTGGCTTGCTTGCGGCGGAGTGAAGTTGGCAGCGAGTTTTGGTGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

15.58

Weight (kDa)

6.94

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11060
fragaria_vesca	FvH4_4g00740 FvH4_6g07030 FvH4_6g07030
malus_domestica	MD04G1196700.v1.1 MD12G1209600.v1.1
prunus_persica	Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1
pyrus_communis	pycom12g19690
rosa_chinensis	RchiOBHm_Chr1g0345881 RchiOBHm_Chr2g0130211 RchiOBHm_Chr3g0456561 RchiOBHm_Chr3g0481651 RchiOBHm_Chr4g0404121 RchiOBHm_Chr4g0439671 RchiOBHm_Chr6g0253121
rosa_laevigata	RLG00000000940 RLG00000007307 RLG00000025293
rosa_multiflora	Rmu_sc0002607.1_g000003 Rmu_sc0017908.1_g000012
rosa_roxburghii	Rroxscaffold_2G00133280 Rroxscaffold_4G00309030 Rroxscaffold_4G00314410 Rroxscaffold_5G00340470 Rroxscaffold_5G00380600 Rroxscaffold_6G00422620
rosa_rugosa	Rorug03G0013900 Rorug03G0013900
rosa_samantha	Rh1CG068600 Rh3AG074700 Rh3BG076400 Rh3DG078200 Rh5AG110200 Rh5DG213600 Rh7DG365300
rosa_wichuraiana	Rw3G006390 Rw3G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	206
AciI	CCGC	5 cut(s)	101, 110, 300, 409, 412
AclWI	GGATC	3 cut(s)	231, 319, 332
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	2 cut(s)	207, 387
AgsI	TTSAA	2 cut(s)	23, 279
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	3 cut(s)	231, 319, 332
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	187, 247
ApeKI	GCWGC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	263
AxyI	CCTNAGG	1 cut(s)	191
BamHI	GGATCC	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	438
BccI	CCATC	2 cut(s)	139, 302
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BcoDI	GTCTC	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	210
BglI	GCCNNNNNGGC	1 cut(s)	246
BisI	GCNGC	4 cut(s)	102, 301, 410, 427
BlsI	GCNGC	4 cut(s)	103, 302, 411, 428
BmeT110I	CYCGRG	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	208, 326
Bpu10I	CCTNAGC	2 cut(s)	175, 346
BsaHI	GRCGYC	2 cut(s)	207, 387
BsaJI	CCNNGG	2 cut(s)	241, 250
Bse118I	RCCGGY	1 cut(s)	209
Bse21I	CCTNAGG	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	241, 250
BseGI	GGATG	2 cut(s)	150, 313
BseMII	CTCAG	2 cut(s)	182, 360
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	438
BshFI	GGCC	2 cut(s)	189, 249
BshNI	GGYRCC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	3 cut(s)	98, 142, 210
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	189, 249
BsoBI	CYCGRG	1 cut(s)	263
Bsp143I	GATC	3 cut(s)	81, 223, 324
Bsp19I	CCATGG	2 cut(s)	241, 250
BspACI	CCGC	5 cut(s)	101, 110, 300, 409, 412
BspANI	GGCC	2 cut(s)	189, 249
BspCNI	CTCAG	2 cut(s)	183, 359
BspLI	GGNNCC	2 cut(s)	208, 326
BspPI	GGATC	3 cut(s)	231, 319, 332
BspT107I	GGYRCC	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	241, 250
BssMI	GATC	3 cut(s)	81, 223, 324
BssNI	GRCGYC	2 cut(s)	207, 387
BssT1I	CCWWGG	2 cut(s)	241, 250
BstACI	GRCGYC	2 cut(s)	207, 387
BstC8I	GCNNGC	5 cut(s)	211, 339, 343, 403, 407
BstDEI	CTNAG	3 cut(s)	175, 191, 346
BstDSI	CCRYGG	2 cut(s)	241, 250
BstF5I	GGATG	2 cut(s)	150, 313
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	3 cut(s)	84, 226, 327
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	3 cut(s)	81, 223, 324
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 107, 246, 309
BstV1I	GCAGC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	223, 324
BstYI	RGATCY	2 cut(s)	223, 324
Bsu36I	CCTNAGG	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	189, 249
BtgI	CCRYGG	2 cut(s)	241, 250
BtsCI	GGATG	2 cut(s)	150, 313
Cac8I	GCNNGC	5 cut(s)	211, 339, 343, 403, 407
CfoI	GCGC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	209
CseI	GACGC	1 cut(s)	376
CviAII	CATG	2 cut(s)	242, 251
DdeI	CTNAG	3 cut(s)	175, 191, 346
DinI	GGCGCC	1 cut(s)	208
DpnI	GATC	3 cut(s)	83, 225, 326
DpnII	GATC	3 cut(s)	81, 223, 324
EciI	GGCGGA	1 cut(s)	427
Eco130I	CCWWGG	2 cut(s)	241, 250
Eco57I	CTGAAG	1 cut(s)	366
Eco81I	CCTNAGG	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	263
EcoT14I	CCWWGG	2 cut(s)	241, 250
EgeI	GGCGCC	1 cut(s)	208
EheI	GGCGCC	1 cut(s)	208
ErhI	CCWWGG	2 cut(s)	241, 250
FaeI	CATG	2 cut(s)	245, 254
FaiI	YATR	4 cut(s)	204, 243, 252, 445
FatI	CATG	2 cut(s)	241, 250
Fnu4HI	GCNGC	4 cut(s)	102, 301, 410, 427
FokI	GGATG	2 cut(s)	157, 320
Fsp4HI	GCNGC	4 cut(s)	102, 301, 410, 427
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	4 cut(s)	102, 301, 410, 427
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	189, 249
HapII	CCGG	3 cut(s)	98, 142, 210
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	209
Hin1I	GRCGYC	2 cut(s)	207, 387
Hin1II	CATG	2 cut(s)	245, 254
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	3 cut(s)	73, 270, 275
HpaII	CCGG	3 cut(s)	98, 142, 210
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	2 cut(s)	221, 263
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	1 cut(s)	390
HpyCH4IV	ACGT	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 107, 246, 309
HpyF3I	CTNAG	3 cut(s)	175, 191, 346
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	2 cut(s)	207, 387
Hsp92II	CATG	2 cut(s)	245, 254
HspAI	GCGC	1 cut(s)	207
KasI	GGCGCC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	81, 223, 324
Lsp1109I	GCAGC	1 cut(s)	438
MaeII	ACGT	1 cut(s)	330
MalI	GATC	3 cut(s)	83, 225, 326
MboI	GATC	3 cut(s)	81, 223, 324
MboII	GAAGA	1 cut(s)	222
MflI	RGATCY	2 cut(s)	223, 324
Mly113I	GGCGCC	1 cut(s)	207
MlyI	GAGTC	2 cut(s)	67, 279
MmeI	TCCRAC	1 cut(s)	31
MreI	CGCCGGCG	1 cut(s)	209
MroNI	GCCGGC	1 cut(s)	209
MspI	CCGG	3 cut(s)	98, 142, 210
MwoI	GCNNNNNNNGC	4 cut(s)	39, 107, 246, 309
NaeI	GCCGGC	1 cut(s)	211
NarI	GGCGCC	1 cut(s)	207
NcoI	CCATGG	2 cut(s)	241, 250
NdeII	GATC	3 cut(s)	81, 223, 324
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	2 cut(s)	245, 254
NlaIV	GGNNCC	2 cut(s)	208, 326
PaeR7I	CTCGAG	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	103, 302, 411, 428
PleI	GAGTC	2 cut(s)	67, 278
PluTI	GGCGCC	1 cut(s)	210
PpsI	GAGTC	2 cut(s)	67, 278
PspN4I	GGNNCC	2 cut(s)	208, 326
PsuI	RGATCY	2 cut(s)	223, 324
SatI	GCNGC	4 cut(s)	102, 301, 410, 427
Sau3AI	GATC	3 cut(s)	81, 223, 324
SchI	GAGTC	2 cut(s)	67, 279
SetI	ASST	3 cut(s)	197, 291, 333
SfoI	GGCGCC	1 cut(s)	208
Sfr274I	CTCGAG	1 cut(s)	263
SgrAI	CRCCGGYG	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SsiI	CCGC	5 cut(s)	101, 110, 300, 409, 412
SspDI	GGCGCC	1 cut(s)	206
StyI	CCWWGG	2 cut(s)	241, 250
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	2 cut(s)	264, 273
TauI	GCSGC	3 cut(s)	104, 303, 412
TfiI	GAWTC	1 cut(s)	275
TseI	GCWGC	1 cut(s)	426
TspDTI	ATGAA	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XhoI	CTCGAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.