Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002605

Physical Location & Seq

Genomic Coordinates Forward (+)

70380156 .. 70385936

Gene Structure 5781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00133280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGAGAGAGGGAACGATCGAGTTTTGGTTGGAATTCAAATAGGGAACTGAGCTTCCAAAATCGACTATTGTTCGGGTCCGGCGCCGACAATACTTCCAATACTGAGATAGATCATTTGGTGTCTATGGTTAACATGAGCTGTATTACAGCGGTGGGCAGGCAAAGAAGCTCAAAGTTGTGGTACTCGAGCAGCTCAACTGACAGTGACACTAATGACACAAAGAAAGTTGGTGCTGAAGAAGATTTTGACGATTTTCTTAGGTGGCTTGAAAGATACGAAATGGAAGCCCAAGGTGTGGATCCCAAAAAGGGGTTGGGGATTTCGTGGTGTGCACAAGCTGTATTGAAAAGTATACCTTCCACAAGCAACAATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

126

Amino Acids

14.21

Weight (kDa)

5.16

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11060
fragaria_vesca	FvH4_4g00740 FvH4_6g07030 FvH4_6g07030
malus_domestica	MD04G1196700.v1.1 MD12G1209600.v1.1
prunus_persica	Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1
pyrus_communis	pycom12g19690
rosa_chinensis	RchiOBHm_Chr1g0345881 RchiOBHm_Chr2g0130211 RchiOBHm_Chr3g0456561 RchiOBHm_Chr3g0481651 RchiOBHm_Chr4g0404121 RchiOBHm_Chr4g0439671 RchiOBHm_Chr6g0253121
rosa_laevigata	RLG00000000940 RLG00000007307 RLG00000025293
rosa_multiflora	Rmu_sc0002607.1_g000003 Rmu_sc0017908.1_g000012
rosa_roxburghii	Rroxscaffold_2G00133280 Rroxscaffold_4G00309030 Rroxscaffold_4G00314410 Rroxscaffold_5G00340470 Rroxscaffold_5G00380600 Rroxscaffold_6G00422620
rosa_rugosa	Rorug03G0013900 Rorug03G0013900
rosa_samantha	Rh1CG068600 Rh3AG074700 Rh3BG076400 Rh3DG078200 Rh5AG110200 Rh5DG213600 Rh7DG365300
rosa_wichuraiana	Rw3G006390 Rw3G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	355
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	2 cut(s)	296, 309
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	258
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	3 cut(s)	298, 311, 312
AgsI	TTSAA	3 cut(s)	39, 272, 349
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
AluBI	AGCT	5 cut(s)	54, 141, 171, 195, 341
AluI	AGCT	5 cut(s)	54, 141, 171, 195, 341
Alw21I	GWGCWC	1 cut(s)	337
Alw44I	GTGCAC	1 cut(s)	333
AlwI	GGATC	2 cut(s)	296, 309
Ama87I	CYCGRG	1 cut(s)	187
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	337
BamHI	GGATCC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	3 cut(s)	79, 85, 303
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 311, 312
BseDI	CCNNGG	1 cut(s)	292
BseLI	CCNNNNNNNGG	3 cut(s)	298, 311, 312
BseMII	CTCAG	2 cut(s)	41, 96
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	3 cut(s)	298, 311, 312
BsoBI	CYCGRG	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	3 cut(s)	17, 112, 301
BspACI	CCGC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	42, 97
BspLI	GGNNCC	3 cut(s)	79, 85, 303
BspPI	GGATC	2 cut(s)	296, 309
BspT107I	GGYRCC	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	3 cut(s)	17, 112, 301
BssNAI	GTATAC	1 cut(s)	356
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	292
Bst1107I	GTATAC	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	50, 105, 260
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	3 cut(s)	20, 115, 304
BstMBI	GATC	3 cut(s)	17, 112, 301
BstMCI	CGRYCG	1 cut(s)	20
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BstZ17I	GTATAC	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	161
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	7 cut(s)	54, 141, 171, 195, 268, 290, 341
CviKI_1	RGCY	7 cut(s)	54, 141, 171, 195, 268, 290, 341
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	3 cut(s)	50, 105, 260
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	3 cut(s)	19, 114, 303
DpnII	GATC	3 cut(s)	17, 112, 301
Eco130I	CCWWGG	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	292
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	1 cut(s)	139
FaiI	YATR	3 cut(s)	128, 137, 356
FalI	AAGNNNNNCTT	2 cut(s)	343, 375
FatI	CATG	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	193
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	87
HapII	CCGG	1 cut(s)	81
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	81
Hpy166II	GTNNAC	3 cut(s)	133, 335, 356
Hpy8I	GTNNAC	3 cut(s)	133, 335, 356
HpyAV	CCTTC	1 cut(s)	369
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	50, 105, 260
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	1 cut(s)	84
KasI	GGCGCC	1 cut(s)	83
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	17, 112, 301
LpnPI	CCDG	2 cut(s)	94, 145
Lsp1109I	GCAGC	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	3 cut(s)	19, 114, 303
MboI	GATC	3 cut(s)	17, 112, 301
MboII	GAAGA	2 cut(s)	251, 254
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	1 cut(s)	34
Mly113I	GGCGCC	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	11
MnlI	CCTC	1 cut(s)	3
MseI	TTAA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	1 cut(s)	81
NarI	GGCGCC	1 cut(s)	84
NdeII	GATC	3 cut(s)	17, 112, 301
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	3 cut(s)	79, 85, 303
NmuCI	GTSAC	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	187
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	194
Ple19I	CGATCG	1 cut(s)	20
PluTI	GGCGCC	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	79, 85, 303
PspPI	GGNCC	1 cut(s)	78
PspXI	VCTCGAGB	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	301
PvuI	CGATCG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	193
Sau3AI	GATC	3 cut(s)	17, 112, 301
Sau96I	GGNCC	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	8 cut(s)	56, 143, 173, 197, 266, 298, 343, 361
SfoI	GGCGCC	1 cut(s)	85
Sfr274I	CTCGAG	1 cut(s)	187
SinI	GGWCC	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	1 cut(s)	152
SspDI	GGCGCC	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	3 cut(s)	20, 64, 188
TasI	AATT	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	1 cut(s)	192
Tsp45I	GTSAC	1 cut(s)	206
TspRI	CASTG	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	298
VneI	GTGCAC	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XhoI	CTCGAG	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.