Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017908.1

Orthogroup ID

OG0002605

Physical Location & Seq

Genomic Coordinates Reverse (-)

32803 .. 34641

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017908.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgggcgggcaaagaagctcgaagttatggtactcgagcggctcaatcgacagtgacactaatgacgcaaaacaacttggtgccgaagaagatattgacgattttcttggtggcttgaaagatacaaatgtgcaagcccaaggtgtggatcccaagaggggttggggatttcgcggtgtgcacaaggcaattatttgtggaagagttggacaatccccagtgcagaagatcttgaggaatggccgaactgtaaccatcttcactgttgggacggggggcatgtttgaccagagattactgggaaaggacttgccaagacctgctcagtggcaccgaattgctgtgcataatgatgcacttggggcttatgcagttaaacaatttgttaaaaattcatcagtttatgttgagggtgacatcgaaactagagtttacaatgatagcatcaatggtgaagttaagaatattccagagatctgcattcgtcatgatgggaagatccgtcttataaagagtggagaaagcatcagcagtatgtcgttggatgatctgcgagaagacttaccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

189

Amino Acids

20.79

Weight (kDa)

6.91

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11060
fragaria_vesca	FvH4_4g00740 FvH4_6g07030 FvH4_6g07030
malus_domestica	MD04G1196700.v1.1 MD12G1209600.v1.1
prunus_persica	Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1
pyrus_communis	pycom12g19690
rosa_chinensis	RchiOBHm_Chr1g0345881 RchiOBHm_Chr2g0130211 RchiOBHm_Chr3g0456561 RchiOBHm_Chr3g0481651 RchiOBHm_Chr4g0404121 RchiOBHm_Chr4g0439671 RchiOBHm_Chr6g0253121
rosa_laevigata	RLG00000000940 RLG00000007307 RLG00000025293
rosa_multiflora	Rmu_sc0002607.1_g000003 Rmu_sc0017908.1_g000012
rosa_roxburghii	Rroxscaffold_2G00133280 Rroxscaffold_4G00309030 Rroxscaffold_4G00314410 Rroxscaffold_5G00340470 Rroxscaffold_5G00380600 Rroxscaffold_6G00422620
rosa_rugosa	Rorug03G0013900 Rorug03G0013900
rosa_samantha	Rh1CG068600 Rh3AG074700 Rh3BG076400 Rh3DG078200 Rh5AG110200 Rh5DG213600 Rh7DG365300
rosa_wichuraiana	Rw3G006390 Rw3G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	509
Acc36I	ACCTGC	1 cut(s)	328
AccB1I	GGYRCC	2 cut(s)	80, 330
AccB7I	CCANNNNNTGG	1 cut(s)	145
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	1 cut(s)	174
AciI	CCGC	3 cut(s)	6, 39, 174
AclWI	GGATC	3 cut(s)	143, 156, 493
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	391
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	145, 158
AgsI	TTSAA	1 cut(s)	118
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw21I	GWGCWC	1 cut(s)	183
Alw44I	GTGCAC	1 cut(s)	179
AlwI	GGATC	3 cut(s)	143, 156, 493
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	1 cut(s)	241
ApaLI	GTGCAC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	425, 464
AvaI	CYCGRG	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	183
BaeI	ACNNNNGTAYC	2 cut(s)	114, 147
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	2 cut(s)	80, 330
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
BbsI	GAAGAC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	183
BccI	CCATC	2 cut(s)	263, 485
BfaI	CTAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	328
BglII	AGATCT	2 cut(s)	228, 474
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	34
BmiI	GGNNCC	3 cut(s)	82, 150, 332
BmrI	ACTGGG	2 cut(s)	212, 308
BmsI	GCATC	3 cut(s)	343, 453, 534
BmuI	ACTGGG	2 cut(s)	212, 308
BpiI	GAAGAC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 158
Bse1I	ACTGG	2 cut(s)	218, 303
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	2 cut(s)	145, 158
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	218, 303
BseSI	GKGCMC	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	2 cut(s)	80, 330
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	145, 158
BsmFI	GGGAC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	480
BsnI	GGCC	1 cut(s)	243
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	5 cut(s)	148, 228, 474, 498, 547
BspACI	CCGC	3 cut(s)	6, 39, 174
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	3 cut(s)	82, 150, 332
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	3 cut(s)	143, 156, 493
BspT107I	GGYRCC	2 cut(s)	80, 330
BsrBI	CCGCTC	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	218, 303
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	5 cut(s)	148, 228, 474, 498, 547
BssT1I	CCWWGG	1 cut(s)	139
Bst4CI	ACNGT	3 cut(s)	53, 250, 265
Bst6I	CTCTTC	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	8, 135
BstDEI	CTNAG	2 cut(s)	324, 567
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	5 cut(s)	151, 231, 477, 501, 550
BstMBI	GATC	5 cut(s)	148, 228, 474, 498, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	283
BstSLI	GKGCMC	1 cut(s)	183
BstUI	CGCG	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	4 cut(s)	148, 228, 474, 498
BstYI	RGATCY	4 cut(s)	148, 228, 474, 498
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	4 cut(s)	58, 225, 261, 332
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	8, 135
CciI	TCATGA	1 cut(s)	487
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	2 cut(s)	280, 488
CviJI	RGCY	6 cut(s)	18, 42, 114, 137, 243, 365
CviKI_1	RGCY	6 cut(s)	18, 42, 114, 137, 243, 365
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	324, 567
DpnI	GATC	5 cut(s)	150, 230, 476, 500, 549
DpnII	GATC	5 cut(s)	148, 228, 474, 498, 547
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	2 cut(s)	283, 491
FaiI	YATR	8 cut(s)	28, 281, 348, 369, 405, 489, 509, 536
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	2 cut(s)	279, 487
Fnu4HI	GCNGC	1 cut(s)	40
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	243
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	283, 491
HphI	GGTGA	2 cut(s)	425, 464
Hpy166II	GTNNAC	2 cut(s)	181, 433
Hpy188III	TCNNGA	3 cut(s)	232, 470, 488
Hpy8I	GTNNAC	2 cut(s)	181, 433
HpyCH4III	ACNGT	3 cut(s)	53, 250, 265
HpyCH4V	TGCA	7 cut(s)	133, 181, 223, 346, 356, 371, 480
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	2 cut(s)	324, 567
Hsp92II	CATG	2 cut(s)	283, 491
Kzo9I	GATC	5 cut(s)	148, 228, 474, 498, 547
LpnPI	CCDG	5 cut(s)	231, 284, 302, 333, 483
LweI	GCATC	3 cut(s)	343, 453, 534
MaeI	CTAG	1 cut(s)	426
MaeIII	GTNAC	3 cut(s)	53, 250, 413
MalI	GATC	5 cut(s)	150, 230, 476, 500, 549
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	5 cut(s)	148, 228, 474, 498, 547
MboII	GAAGA	7 cut(s)	98, 101, 213, 238, 250, 508, 569
MflI	RGATCY	4 cut(s)	148, 228, 474, 498
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	4 cut(s)	189, 336, 380, 391
MmeI	TCCRAC	2 cut(s)	187, 522
MnlI	CCTC	3 cut(s)	150, 228, 403
MseI	TTAA	3 cut(s)	375, 387, 459
MslI	CAYNNNNRTG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	480
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	5 cut(s)	148, 228, 474, 498, 547
NlaIII	CATG	2 cut(s)	283, 491
NlaIV	GGNNCC	3 cut(s)	82, 150, 332
NmuCI	GTSAC	2 cut(s)	53, 413
NspI	RCATGY	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	34
PagI	TCATGA	1 cut(s)	487
PctI	GAATGC	1 cut(s)	480
PflMI	CCANNNNNTGG	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	41
PsiI	TTATAA	1 cut(s)	509
PspN4I	GGNNCC	3 cut(s)	82, 150, 332
PspXI	VCTCGAGB	1 cut(s)	34
PsuI	RGATCY	4 cut(s)	148, 228, 474, 498
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	3 cut(s)	375, 387, 459
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	5 cut(s)	148, 228, 474, 498, 547
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	4 cut(s)	20, 145, 322, 568
SfaNI	GCATC	3 cut(s)	343, 453, 534
Sfr274I	CTCGAG	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	2 cut(s)	34, 232
SmoI	CTYRAG	2 cut(s)	34, 232
Sse9I	AATT	4 cut(s)	189, 336, 380, 391
SsiI	CCGC	3 cut(s)	6, 39, 174
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	3 cut(s)	53, 250, 265
TaqI	TCGA	4 cut(s)	20, 35, 48, 420
TasI	AATT	4 cut(s)	189, 336, 380, 391
TauI	GCSGC	1 cut(s)	42
Tru1I	TTAA	3 cut(s)	375, 387, 459
Tru9I	TTAA	3 cut(s)	375, 387, 459
TscAI	CASTG	4 cut(s)	58, 225, 268, 332
TseFI	GTSAC	2 cut(s)	53, 413
Tsp45I	GTSAC	2 cut(s)	53, 413
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	4 cut(s)	58, 225, 268, 332
Van91I	CCANNNNNTGG	1 cut(s)	145
VneI	GTGCAC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	391
XceI	RCATGY	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	34
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.