Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Reverse (-)

1092468 .. 1098073

Gene Structure 5606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0013900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2280 bp

ATGAACCGCACCCCGGCTCAGTTTTCCCACACACCATTCACTTTCCCTCCCTCAATTCGTAACCCTAATCCTAACCCCAATGTGTTCCACTCCCAGCCGCAGAATGCACAACCAGAAATCAACACTCCTCCTTTGCCTCCTGACCTTTCTACTACAATCTCATCTTTAAGTAACCTCATTCGTGATTCTTCCCGGACCCTTGACTCACTTTCCACTCTCCTCCCTGTCCCGAGCCAAAAGGATTTTATGGACAATGATTGCCTCGTTCCTTGCCCTGTTAACCCCCACCACCGTGTGCACCCCCACTCTCTTTTCTCCCACTCCCTGCGCTGCCCCCACTCTCTCCACCACCTTCTCCCACCGCTCCATTACCCCAAAACCCTCAAATCCCCTGACCAGTCACAAACTGGTAAAAGTTTTATTCAAACGCATGACGGCTCAGACGCTGCTGATATGTGCTTGTCCTTGGAGCATTACTATGCAGAATTTGGCTGCAATTTTTTCTACCGTGATTGCCCTGGTGTTGTTAACTCTTCCGCGCTGGATGGTTTCAACAAAACATTCACACTTCCCTCAGTTTTGTCAGCTGAGTGTGCAAATTTTTCCGGTAGCGAAGAGAGTGAGATGATGGATTGTGACAAGGGATGTAGTAGATTTCTCCCATCAGAGTCTTGGGCTATAAAAAGAGAAGTTCAGGGATGGAATGATTATCCTTCTATGTACTCAAACTGTGTGCTACATGCCATTTTGGGGTTAGGTGTGGTTAGAGAGTGTGATTTGGCGATATGGGTAATAGCAAATTCGCCCAAGTATGGGATTGTGATTGACGTGCCCATGAAAGATCATATAGTTTTGCTCATTACCCTGTGCTTAAGAGCAATTGTAAGGGAAGCTTTAAGTAAGGTAAAGTATAGAGATTCAGAGAGTGGGCCTTTTGAGTGTCCCACTTTGGTTGAGGCATTAGTGTGGTTGGGATCTCAGCTTTCCAAACCCTATGGTGAATTGAATGGAAAATTATTTGCCATAAACATTCTCAAGCATTGCATACTAGATGCTGCCTTGGGCTCATTAGTTTTCCCATTGGAGCAAAAGGTGACAGAGTCTCCTACTTTAGAAGAAGGTTCATTGAATTCGGAGGTTGATGGCAGTTGTGTTAGGGATGATGAAGTTACGAAATCACTAAGCACTGATGGTGCATATAGTATGATGAAGGGAAACATTATCAATAAGGTGGTATTTGTGTCCCAGGTCGCAGCAGCCATTGCAGCATTGCATGAACGGTTCTTGCTAGAAGAAAAAATTAAGGGAGAACGAGTTTCACAAACCCTCACTAGACATCAACGAGTGCTTGAGCATGAGTATGTCTCACAAAGGGCTGATGAGGAGCGGAAAAACCGAAGTCAGTATAGACCTATTATTGACCATGATGGGCTGCCTCGGCAACAATCAAGTAACCAGGAAACAAACAAGACCAAGACAAGAGAAGAGTTATTGGCAGAAGAAAGGGACTACAAACGACGAAGAATGTCATATCGTGGCAAAAAAGTGAAGCGTACAACTTTGCAGGTTACCAGGGATATTATAGAGGAATACATGGAGGAAATCAAGCAAGCTGGAGGGATTGGATGCTTTGAGCGAGCAACTGAAGGGCAAGGGAGCATTCCATTCAAACTACCTACTGCTACTGACTTCACCACTGATGATGACAATCCAACAAAAAGAAATAATGAGTCAGAGGGAGGTAGCCCAAGTCGTGACAGAAAACAATCACATTCACGCTATGCCATCCATTCTACAACTTCCAGGCATGCTTCCACTAAAGATCAAGAGAAACCAAAACAGAGTCATCACCGAGAATATCTAGAAGATTCGAGAAGTCACAGTAGAAACAGGCGTGACACAGAGTATTCCAGAAGCCCAGAAAGCTCCCGAAGTCGTGGATGGTCACATGGGCAGAGTGAACAAGACCATCGGCAGGGGACCAATACCAAGCATCATGAAAGCAATTGGTCATCTAAGTATCATGATAGTAGATCATCTTCTCTGTCAAACTCGCACCAAAAGTCAAAAATTAAAAGGGATGAGAAAACATATGAGAATCATCGTTCAAACTCTCGGAAGACAAATACTTTTGATGATAGATATGATTCCAATACTTTTGACGATAGATATGATCCCTTGGAATCTCATGACAGATATGTAGAAGATGTCTCTTCTAGCAAAAAGTATGGTAGAGCAAGCAGATATTCTGTAAATGAGCAAAGTCCGGAGTGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

759

Amino Acids

86.23

Weight (kDa)

6.73

Isoelectric Point (pI)

61.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1555
AccBSI	CCGCTC	2 cut(s)	364, 1387
AccII	CGCG	1 cut(s)	539
AccIII	TCCGGA	1 cut(s)	2266
AciI	CCGC	5 cut(s)	7, 98, 362, 537, 1387
AclWI	GGATC	2 cut(s)	982, 2168
AcsI	RAATTY	4 cut(s)	485, 598, 799, 1129
AcuI	CTGAAG	1 cut(s)	1665
AdeI	CACNNNGTG	1 cut(s)	295
AfaI	GTAC	2 cut(s)	722, 1555
AfiI	CCNNNNNNNGG	5 cut(s)	13, 750, 812, 813, 1975
AflII	CTTAAG	1 cut(s)	871
AgsI	TTSAA	6 cut(s)	425, 553, 1006, 1129, 1669, 2109
AjiI	CACGTC	1 cut(s)	829
AjnI	CCWGG	5 cut(s)	517, 1245, 1455, 1571, 1802
AleI	CACNNNNGTG	1 cut(s)	291
AluBI	AGCT	5 cut(s)	587, 893, 982, 1613, 1926
AluI	AGCT	5 cut(s)	587, 893, 982, 1613, 1926
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	3 cut(s)	1107, 1369, 2215
Alw44I	GTGCAC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	982, 2168
AlwNI	CAGNNNCTG	1 cut(s)	446
Ama87I	CYCGRG	1 cut(s)	229
Aor13HI	TCCGGA	1 cut(s)	2266
AoxI	GGCC	1 cut(s)	929
ApaLI	GTGCAC	1 cut(s)	296
ApeKI	GCWGC	8 cut(s)	330, 446, 492, 1055, 1253, 1256, 1265, 1432
ApoI	RAATTY	4 cut(s)	485, 598, 799, 1129
AspLEI	GCGC	2 cut(s)	330, 541
AspS9I	GGNCC	3 cut(s)	195, 929, 1980
AsuC2I	CCSGG	2 cut(s)	14, 193
AsuHPI	GGTGA	4 cut(s)	1010, 1105, 1684, 1841
AvaI	CYCGRG	1 cut(s)	229
AvaII	GGWCC	2 cut(s)	195, 1980
BaeGI	GKGCMC	2 cut(s)	300, 834
BanII	GRGCYC	1 cut(s)	1067
BarI	GAAGNNNNNNTAC	2 cut(s)	2023, 2055
BbsI	GAAGAC	1 cut(s)	2126
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	8 cut(s)	317, 433, 479, 1042, 1265, 1268, 1277, 1419
BceAI	ACGGC	1 cut(s)	451
BciT130I	CCWGG	5 cut(s)	519, 1247, 1457, 1573, 1804
BcnI	CCSGG	2 cut(s)	14, 193
BcoDI	GTCTC	3 cut(s)	1107, 1369, 2215
BfaI	CTAG	5 cut(s)	1049, 1289, 1332, 1862, 2217
BfrI	CTTAAG	1 cut(s)	871
BfuAI	ACCTGC	1 cut(s)	1555
BisI	GCNGC	9 cut(s)	98, 331, 447, 493, 1056, 1254, 1257, 1266, 1433
BlsI	GCNGC	9 cut(s)	99, 332, 448, 494, 1057, 1255, 1258, 1267, 1434
Bme1390I	CCNGG	7 cut(s)	14, 193, 519, 1247, 1457, 1573, 1804
Bme18I	GGWCC	2 cut(s)	195, 1980
BmeT110I	CYCGRG	1 cut(s)	229
BmgBI	CACGTC	1 cut(s)	829
BmgT120I	GGNCC	3 cut(s)	195, 929, 1980
BmiI	GGNNCC	2 cut(s)	197, 1981
BmrFI	CCNGG	7 cut(s)	14, 193, 519, 1247, 1457, 1573, 1804
BmsI	GCATC	3 cut(s)	1042, 1616, 2002
BpiI	GAAGAC	1 cut(s)	2126
BplI	GAGNNNNNCTC	2 cut(s)	1349, 1381
BpmI	CTGGAG	1 cut(s)	1635
BpuEI	CTTGAG	2 cut(s)	1019, 1370
BpuMI	CCSGG	2 cut(s)	14, 193
BsaBI	GATNNNNATC	1 cut(s)	1707
BsaJI	CCNNGG	8 cut(s)	12, 465, 517, 1059, 1245, 1436, 1572, 2178
BsaWI	WCCGGW	2 cut(s)	605, 2266
BsaXI	ACNNNNNCTCC	6 cut(s)	31, 61, 1087, 1117, 1299, 1329
Bsc4I	CCNNNNNNNGG	5 cut(s)	13, 750, 812, 813, 1975
Bse1I	ACTGG	2 cut(s)	397, 412
Bse3DI	GCAATG	3 cut(s)	1039, 1260, 1268
Bse8I	GATNNNNATC	1 cut(s)	1707
BseAI	TCCGGA	1 cut(s)	2266
BseBI	CCWGG	5 cut(s)	519, 1247, 1457, 1573, 1804
BseDI	CCNNGG	8 cut(s)	12, 465, 517, 1059, 1245, 1436, 1572, 2178
BseGI	GGATG	8 cut(s)	550, 650, 704, 1165, 1631, 1785, 1946, 2086
BseJI	GATNNNNATC	1 cut(s)	1707
BseLI	CCNNNNNNNGG	5 cut(s)	13, 750, 812, 813, 1975
BseMI	GCAATG	3 cut(s)	1039, 1260, 1268
BseMII	CTCAG	5 cut(s)	32, 453, 579, 588, 992
BseNI	ACTGG	2 cut(s)	397, 412
BseRI	GAGGAG	3 cut(s)	117, 209, 1397
BseSI	GKGCMC	2 cut(s)	300, 834
BseXI	GCAGC	8 cut(s)	317, 433, 479, 1042, 1265, 1268, 1277, 1419
BseYI	CCCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	539
BshFI	GGCC	1 cut(s)	931
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	4 cut(s)	14, 193, 606, 2267
BslFI	GGGAC	5 cut(s)	212, 927, 1228, 1520, 1993
BslI	CCNNNNNNNGG	5 cut(s)	13, 750, 812, 813, 1975
BsmAI	GTCTC	3 cut(s)	1107, 1369, 2215
BsmFI	GGGAC	5 cut(s)	212, 927, 1228, 1520, 1993
BsmI	GAATGC	2 cut(s)	109, 1659
BsnI	GGCC	1 cut(s)	931
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	3 cut(s)	300, 834, 1067
Bsp13I	TCCGGA	1 cut(s)	2266
Bsp143I	GATC	5 cut(s)	841, 974, 1822, 2033, 2173
BspACI	CCGC	5 cut(s)	7, 98, 362, 537, 1387
BspANI	GGCC	1 cut(s)	931
BspCNI	CTCAG	5 cut(s)	31, 452, 580, 587, 991
BspEI	TCCGGA	1 cut(s)	2266
BspFNI	CGCG	1 cut(s)	539
BspHI	TCATGA	3 cut(s)	1996, 2023, 2188
BspLI	GGNNCC	2 cut(s)	197, 1981
BspMI	ACCTGC	1 cut(s)	1555
BspPI	GGATC	2 cut(s)	982, 2168
BspTI	CTTAAG	1 cut(s)	871
BsrBI	CCGCTC	2 cut(s)	364, 1387
BsrDI	GCAATG	3 cut(s)	1039, 1260, 1268
BsrI	ACTGG	2 cut(s)	397, 412
BssECI	CCNNGG	8 cut(s)	12, 465, 517, 1059, 1245, 1436, 1572, 2178
BssMI	GATC	5 cut(s)	841, 974, 1822, 2033, 2173
BssT1I	CCWWGG	3 cut(s)	465, 1059, 2178
Bst2UI	CCWGG	5 cut(s)	519, 1247, 1457, 1573, 1804
Bst4CI	ACNGT	5 cut(s)	293, 509, 731, 1281, 1883
Bst6I	CTCTTC	4 cut(s)	538, 609, 1479, 2218
BstAFI	CTTAAG	1 cut(s)	871
BstAPI	GCANNNNNTGC	1 cut(s)	1262
BstC8I	GCNNGC	4 cut(s)	1611, 1638, 1809, 2239
BstDEI	CTNAG	7 cut(s)	18, 439, 574, 588, 978, 1181, 2016
BstEII	GGTNACC	1 cut(s)	1567
BstF5I	GGATG	8 cut(s)	550, 650, 704, 1165, 1631, 1785, 1946, 2086
BstFNI	CGCG	1 cut(s)	539
BstHHI	GCGC	2 cut(s)	330, 541
BstKTI	GATC	5 cut(s)	844, 977, 1825, 2036, 2176
BstMAI	GTCTC	3 cut(s)	1107, 1369, 2215
BstMBI	GATC	5 cut(s)	841, 974, 1822, 2033, 2173
BstMWI	GCNNNNNNNGC	5 cut(s)	593, 1262, 1265, 1438, 1923
BstNI	CCWGG	5 cut(s)	519, 1247, 1457, 1573, 1804
BstNSI	RCATGY	2 cut(s)	743, 1811
BstPI	GGTNACC	1 cut(s)	1567
BstSCI	CCNGG	7 cut(s)	12, 191, 517, 1245, 1455, 1571, 1802
BstSLI	GKGCMC	2 cut(s)	300, 834
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	8 cut(s)	317, 433, 479, 1042, 1265, 1268, 1277, 1419
BstV2I	GAAGAC	1 cut(s)	2126
BstX2I	RGATCY	1 cut(s)	974
BstYI	RGATCY	1 cut(s)	974
BsuRI	GGCC	1 cut(s)	931
BtrI	CACGTC	1 cut(s)	829
BtsCI	GGATG	8 cut(s)	550, 650, 704, 1165, 1631, 1785, 1946, 2086
BtsIMutI	CAGTG	2 cut(s)	1185, 1695
BveI	ACCTGC	1 cut(s)	1555
Cac8I	GCNNGC	4 cut(s)	1611, 1638, 1809, 2239
CaiI	CAGNNNCTG	1 cut(s)	446
CciI	TCATGA	3 cut(s)	1996, 2023, 2188
CfoI	GCGC	2 cut(s)	330, 541
Cfr13I	GGNCC	3 cut(s)	195, 929, 1980
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	721, 1554
CspCI	CAANNNNNGTGG	2 cut(s)	934, 969
CviQI	GTAC	2 cut(s)	721, 1554
DdeI	CTNAG	7 cut(s)	18, 439, 574, 588, 978, 1181, 2016
DpnI	GATC	5 cut(s)	843, 976, 1824, 2035, 2175
DpnII	GATC	5 cut(s)	841, 974, 1822, 2033, 2173
DraIII	CACNNNGTG	1 cut(s)	295
Eam1104I	CTCTTC	4 cut(s)	538, 609, 1479, 2218
EarI	CTCTTC	4 cut(s)	538, 609, 1479, 2218
Eco130I	CCWWGG	3 cut(s)	465, 1059, 2178
Eco24I	GRGCYC	1 cut(s)	1067
Eco47I	GGWCC	2 cut(s)	195, 1980
Eco57I	CTGAAG	1 cut(s)	1665
Eco88I	CYCGRG	1 cut(s)	229
Eco91I	GGTNACC	1 cut(s)	1567
EcoO65I	GGTNACC	1 cut(s)	1567
EcoRI	GAATTC	1 cut(s)	1129
EcoRII	CCWGG	5 cut(s)	517, 1245, 1455, 1571, 1802
EcoT14I	CCWWGG	3 cut(s)	465, 1059, 2178
EcoT38I	GRGCYC	1 cut(s)	1067
ErhI	CCWWGG	3 cut(s)	465, 1059, 2178
FalI	AAGNNNNNCTT	2 cut(s)	877, 909
FaqI	GGGAC	5 cut(s)	212, 927, 1228, 1520, 1993
FauNDI	CATATG	1 cut(s)	2092
Fnu4HI	GCNGC	9 cut(s)	98, 331, 447, 493, 1056, 1254, 1257, 1266, 1433
FokI	GGATG	8 cut(s)	557, 657, 711, 1172, 1638, 1772, 1953, 2093
FriOI	GRGCYC	1 cut(s)	1067
Fsp4HI	GCNGC	9 cut(s)	98, 331, 447, 493, 1056, 1254, 1257, 1266, 1433
FspBI	CTAG	5 cut(s)	1049, 1289, 1332, 1862, 2217
GlaI	GCGC	2 cut(s)	329, 540
GluI	GCNGC	9 cut(s)	98, 331, 447, 493, 1056, 1254, 1257, 1266, 1433
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	1635
HaeIII	GGCC	1 cut(s)	931
HapII	CCGG	4 cut(s)	14, 193, 606, 2267
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	2 cut(s)	330, 541
Hin6I	GCGC	2 cut(s)	328, 539
HinP1I	GCGC	2 cut(s)	328, 539
HincII	GTYRAC	2 cut(s)	280, 529
HindII	GTYRAC	2 cut(s)	280, 529
HindIII	AAGCTT	1 cut(s)	891
HpaI	GTTAAC	2 cut(s)	280, 529
HpaII	CCGG	4 cut(s)	14, 193, 606, 2267
HphI	GGTGA	4 cut(s)	1010, 1105, 1684, 1841
Hpy166II	GTNNAC	4 cut(s)	280, 298, 529, 1961
Hpy188I	TCNGA	6 cut(s)	442, 667, 922, 1135, 1735, 2118
Hpy8I	GTNNAC	4 cut(s)	280, 298, 529, 1961
Hpy99I	CGWCG	1 cut(s)	1521
HpyAV	CCTTC	5 cut(s)	362, 723, 1112, 1204, 1640
HpyCH4III	ACNGT	5 cut(s)	293, 509, 731, 1281, 1883
HpyCH4IV	ACGT	1 cut(s)	828
HpyF10VI	GCNNNNNNNGC	5 cut(s)	593, 1262, 1265, 1438, 1923
HpyF3I	CTNAG	7 cut(s)	18, 439, 574, 588, 978, 1181, 2016
HpySE526I	ACGT	1 cut(s)	828
HspAI	GCGC	2 cut(s)	328, 539
Kpn2I	TCCGGA	1 cut(s)	2266
KspAI	GTTAAC	2 cut(s)	280, 529
Kzo9I	GATC	5 cut(s)	841, 974, 1822, 2033, 2173
LmnI	GCTCC	6 cut(s)	369, 469, 1084, 1384, 1656, 1931
Lsp1109I	GCAGC	8 cut(s)	317, 433, 479, 1042, 1265, 1268, 1277, 1419
LweI	GCATC	3 cut(s)	1042, 1616, 2002
MaeI	CTAG	5 cut(s)	1049, 1289, 1332, 1862, 2217
MaeII	ACGT	1 cut(s)	828
MalI	GATC	5 cut(s)	843, 976, 1824, 2035, 2175
MbiI	CCGCTC	2 cut(s)	364, 1387
MboI	GATC	5 cut(s)	841, 974, 1822, 2033, 2173
MfeI	CAATTG	2 cut(s)	879, 2005
MflI	RGATCY	1 cut(s)	974
MhlI	GDGCHC	3 cut(s)	300, 834, 1067
MlyI	GAGTC	5 cut(s)	197, 677, 1109, 1739, 1852
MmeI	TCCRAC	1 cut(s)	1736
MroI	TCCGGA	1 cut(s)	2266
MseI	TTAA	7 cut(s)	167, 279, 528, 872, 896, 1302, 2073
MslI	CAYNNNNRTG	4 cut(s)	291, 477, 964, 1359
MspA1I	CMGCKG	1 cut(s)	587
MspCI	CTTAAG	1 cut(s)	871
MspI	CCGG	4 cut(s)	14, 193, 606, 2267
MspR9I	CCNGG	7 cut(s)	14, 193, 519, 1247, 1457, 1573, 1804
MunI	CAATTG	2 cut(s)	879, 2005
Mva1269I	GAATGC	2 cut(s)	109, 1659
MvaI	CCWGG	5 cut(s)	519, 1247, 1457, 1573, 1804
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	5 cut(s)	593, 1262, 1265, 1438, 1923
NciI	CCSGG	2 cut(s)	14, 193
NdeI	CATATG	1 cut(s)	2092
NdeII	GATC	5 cut(s)	841, 974, 1822, 2033, 2173
NlaIV	GGNNCC	2 cut(s)	197, 1981
NmeAIII	GCCGAG	1 cut(s)	1417
NmuCI	GTSAC	7 cut(s)	399, 635, 1093, 1754, 1877, 1895, 1944
NspI	RCATGY	2 cut(s)	743, 1811
OliI	CACNNNNGTG	1 cut(s)	291
PaeI	GCATGC	1 cut(s)	1811
PagI	TCATGA	3 cut(s)	1996, 2023, 2188
PctI	GAATGC	2 cut(s)	109, 1659
PfeI	GAWTC	6 cut(s)	185, 917, 1868, 2098, 2147, 2183
PflFI	GACNNNGTC	1 cut(s)	1099
PfoI	TCCNGGA	1 cut(s)	191
PkrI	GCNGC	9 cut(s)	99, 332, 448, 494, 1057, 1255, 1258, 1267, 1434
PleI	GAGTC	5 cut(s)	197, 676, 1108, 1738, 1851
PpsI	GAGTC	5 cut(s)	197, 676, 1108, 1738, 1851
Psp6I	CCWGG	5 cut(s)	517, 1245, 1455, 1571, 1802
PspEI	GGTNACC	1 cut(s)	1567
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	5 cut(s)	517, 1245, 1455, 1571, 1802
PspN4I	GGNNCC	2 cut(s)	197, 1981
PspPI	GGNCC	3 cut(s)	195, 929, 1980
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	974
PsyI	GACNNNGTC	1 cut(s)	1099
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	2 cut(s)	722, 1555
RsaNI	GTAC	2 cut(s)	721, 1554
RseI	CAYNNNNRTG	4 cut(s)	291, 477, 964, 1359
SaqAI	TTAA	7 cut(s)	167, 279, 528, 872, 896, 1302, 2073
SatI	GCNGC	9 cut(s)	98, 331, 447, 493, 1056, 1254, 1257, 1266, 1433
Sau3AI	GATC	5 cut(s)	841, 974, 1822, 2033, 2173
Sau96I	GGNCC	3 cut(s)	195, 929, 1980
SchI	GAGTC	5 cut(s)	197, 677, 1109, 1739, 1852
ScrFI	CCNGG	7 cut(s)	14, 193, 519, 1247, 1457, 1573, 1804
SduI	GDGCHC	3 cut(s)	300, 834, 1067
SfaNI	GCATC	3 cut(s)	1042, 1616, 2002
SinI	GGWCC	2 cut(s)	195, 1980
SmiMI	CAYNNNNRTG	4 cut(s)	291, 477, 964, 1359
SmlI	CTYRAG	3 cut(s)	871, 1034, 1349
SmoI	CTYRAG	3 cut(s)	871, 1034, 1349
SphI	GCATGC	1 cut(s)	1811
SsiI	CCGC	5 cut(s)	7, 98, 362, 537, 1387
SspMI	CTAG	5 cut(s)	1049, 1289, 1332, 1862, 2217
StyD4I	CCNGG	7 cut(s)	12, 191, 517, 1245, 1455, 1571, 1802
StyI	CCWWGG	3 cut(s)	465, 1059, 2178
TaaI	ACNGT	5 cut(s)	293, 509, 731, 1281, 1883
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	1 cut(s)	1871
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	6 cut(s)	185, 917, 1868, 2098, 2147, 2183
Tru1I	TTAA	7 cut(s)	167, 279, 528, 872, 896, 1302, 2073
Tru9I	TTAA	7 cut(s)	167, 279, 528, 872, 896, 1302, 2073
TscAI	CASTG	2 cut(s)	1192, 1702
TseFI	GTSAC	7 cut(s)	399, 635, 1093, 1754, 1877, 1895, 1944
TseI	GCWGC	8 cut(s)	330, 446, 492, 1055, 1253, 1256, 1265, 1432
Tsp45I	GTSAC	7 cut(s)	399, 635, 1093, 1754, 1877, 1895, 1944
TspDTI	ATGAA	7 cut(s)	17, 851, 1113, 1179, 1223, 1290, 2013
TspRI	CASTG	2 cut(s)	1192, 1702
Tth111I	GACNNNGTC	1 cut(s)	1099
Vha464I	CTTAAG	1 cut(s)	871
VneI	GTGCAC	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	195, 1980
XapI	RAATTY	4 cut(s)	485, 598, 799, 1129
XbaI	TCTAGA	1 cut(s)	1861
XceI	RCATGY	2 cut(s)	743, 1811
XcmI	CCANNNNNNNNNTGG	2 cut(s)	404, 669
XspI	CTAG	5 cut(s)	1049, 1289, 1332, 1862, 2217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.