Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000955.1

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Reverse (-)

152142 .. 154246

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000955.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggcgaattttgcaaaaccggaaaatgctttgaagcgagctgaagagttgatcaatgttgggcagaagcaagatgcattgcaatcgcttcatgatcttattacatcaaagagatatagagcatggcagaagccacttgaaaaaattatgtttaaatatgtggagctttgtgttgacttgcgcaagggtagatttgccaaggatggtctgattcagtaccgtattatatgtcaacaagtaaatgtcagttccttggaagaggtgatcaagcacttcatgcatctgtcaactgagaaagctgagcaggcacgtacccaggctcaagcattagaagaagcacttgatgttgatgacctcgaagcagataagaggcctgaagatctaatgctgagttatgtcagtgaagagaaaggaaaagataggtctgatcgtgaagttgttactccttggttcaagtttttgtgggaaacctacagaacagtgcttgagatcttgcgcaacaactcaaagttggaggccctttatgcggcaaaagctaatgagggagagggtccagaaattctaagaagtgcgcatgaaggcagttcaagtggtcatgccgagtcattagctgcaacactagctgaacatcagcagcacttcctatatgttcgggtacttggtgcattttacttgcgtatcacaggcagcgatactgatgtctaccagtacctagagcctctgtacaatgactatcggaagttgagaagtaaattggctgatggacgtttctcgttgactcatgtggatgagcttattgatgaacttctgacaaaggactactcatgcgacattgccatgccacgaatcaagaaaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

286

Amino Acids

33.09

Weight (kDa)

5.97

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	3 cut(s)	182, 497, 573
AccI	GTMKAC	1 cut(s)	702
AciI	CCGC	1 cut(s)	527
AcsI	RAATTY	2 cut(s)	7, 558
AcuI	CTGAAG	2 cut(s)	63, 396
AfaI	GTAC	5 cut(s)	218, 313, 657, 710, 725
AfiI	CCNNNNNNNGG	1 cut(s)	526
AgsI	TTSAA	4 cut(s)	34, 140, 454, 588
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	7 cut(s)	41, 166, 299, 536, 611, 623, 793
AluI	AGCT	7 cut(s)	41, 166, 299, 536, 611, 623, 793
AoxI	GGCC	2 cut(s)	371, 516
ApeKI	GCWGC	3 cut(s)	611, 634, 687
ApoI	RAATTY	2 cut(s)	7, 558
AspLEI	GCGC	3 cut(s)	183, 498, 574
AspS9I	GGNCC	2 cut(s)	517, 551
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	551
BaeI	ACNNNNGTAYC	4 cut(s)	661, 684, 694, 717
BbvI	GCAGC	3 cut(s)	598, 646, 699
BccI	CCATC	2 cut(s)	197, 755
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BciT130I	CCWGG	1 cut(s)	317
BclI	TGATCA	2 cut(s)	51, 264
BfaI	CTAG	2 cut(s)	620, 713
BfmI	CTRYAG	1 cut(s)	472
BglII	AGATCT	2 cut(s)	379, 489
BisI	GCNGC	4 cut(s)	528, 612, 635, 688
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	4 cut(s)	529, 613, 636, 689
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	2 cut(s)	517, 551
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	2 cut(s)	64, 289
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	2 cut(s)	306, 506
BsaAI	YACGTR	1 cut(s)	311
BsaJI	CCNNGG	4 cut(s)	198, 252, 315, 446
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse1I	ACTGG	1 cut(s)	706
Bse3DI	GCAATG	2 cut(s)	77, 831
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	4 cut(s)	198, 252, 315, 446
BseGI	GGATG	2 cut(s)	208, 793
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMI	GCAATG	2 cut(s)	77, 831
BseMII	CTCAG	3 cut(s)	282, 291, 380
BseNI	ACTGG	1 cut(s)	706
BseXI	GCAGC	3 cut(s)	598, 646, 699
BshFI	GGCC	2 cut(s)	373, 518
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	526
BsnI	GGCC	2 cut(s)	373, 518
Bsp1407I	TGTACA	1 cut(s)	723
Bsp143I	GATC	6 cut(s)	51, 94, 264, 379, 427, 489
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	1 cut(s)	527
BspANI	GGCC	2 cut(s)	373, 518
BspCNI	CTCAG	3 cut(s)	283, 292, 381
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	552
BsrDI	GCAATG	2 cut(s)	77, 831
BsrGI	TGTACA	1 cut(s)	723
BsrI	ACTGG	1 cut(s)	706
BssECI	CCNNGG	4 cut(s)	198, 252, 315, 446
BssMI	GATC	6 cut(s)	51, 94, 264, 379, 427, 489
BssT1I	CCWWGG	3 cut(s)	198, 252, 446
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	221, 481
Bst6I	CTCTTC	3 cut(s)	39, 252, 399
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstAUI	TGTACA	1 cut(s)	723
BstBAI	YACGTR	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	39, 306
BstDEI	CTNAG	4 cut(s)	291, 300, 389, 563
BstF5I	GGATG	2 cut(s)	208, 793
BstHHI	GCGC	3 cut(s)	183, 498, 574
BstKTI	GATC	6 cut(s)	54, 97, 267, 382, 430, 492
BstMBI	GATC	6 cut(s)	51, 94, 264, 379, 427, 489
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 277, 305, 524, 533, 620
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	472
BstV1I	GCAGC	3 cut(s)	598, 646, 699
BstX2I	RGATCY	2 cut(s)	379, 489
BstYI	RGATCY	2 cut(s)	379, 489
BsuRI	GGCC	2 cut(s)	373, 518
BtsCI	GGATG	2 cut(s)	208, 793
BtsIMutI	CAGTG	2 cut(s)	406, 486
Cac8I	GCNNGC	2 cut(s)	39, 306
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	3 cut(s)	183, 498, 574
Cfr13I	GGNCC	2 cut(s)	517, 551
Csp6I	GTAC	5 cut(s)	217, 312, 656, 709, 724
CviAII	CATG	8 cut(s)	92, 123, 277, 575, 596, 782, 825, 838
CviQI	GTAC	5 cut(s)	217, 312, 656, 709, 724
DdeI	CTNAG	4 cut(s)	291, 300, 389, 563
DpnI	GATC	6 cut(s)	53, 96, 266, 381, 429, 491
DpnII	GATC	6 cut(s)	51, 94, 264, 379, 427, 489
DraI	TTTAAA	1 cut(s)	154
Eam1104I	CTCTTC	3 cut(s)	39, 252, 399
EarI	CTCTTC	3 cut(s)	39, 252, 399
Eco130I	CCWWGG	3 cut(s)	198, 252, 446
Eco147I	AGGCCT	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	551
Eco57I	CTGAAG	2 cut(s)	63, 396
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	3 cut(s)	198, 252, 446
EcoT22I	ATGCAT	2 cut(s)	79, 282
ErhI	CCWWGG	3 cut(s)	198, 252, 446
FaeI	CATG	8 cut(s)	95, 126, 280, 578, 599, 785, 828, 841
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	8 cut(s)	91, 122, 276, 574, 595, 781, 824, 837
FbaI	TGATCA	2 cut(s)	51, 264
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	4 cut(s)	528, 612, 635, 688
FokI	GGATG	2 cut(s)	215, 800
Fsp4HI	GCNGC	4 cut(s)	528, 612, 635, 688
FspAI	RTGCGCAY	1 cut(s)	573
FspBI	CTAG	2 cut(s)	620, 713
FspI	TGCGCA	3 cut(s)	182, 497, 573
GlaI	GCGC	3 cut(s)	182, 497, 573
GluI	GCNGC	4 cut(s)	528, 612, 635, 688
HaeIII	GGCC	2 cut(s)	373, 518
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	3 cut(s)	183, 498, 574
Hin1II	CATG	8 cut(s)	95, 126, 280, 578, 599, 785, 828, 841
Hin6I	GCGC	3 cut(s)	181, 496, 572
HinP1I	GCGC	3 cut(s)	181, 496, 572
HincII	GTYRAC	4 cut(s)	175, 233, 288, 777
HindII	GTYRAC	4 cut(s)	175, 233, 288, 777
HinfI	GANTC	4 cut(s)	211, 602, 778, 846
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	5 cut(s)	175, 233, 288, 703, 777
Hpy188I	TCNGA	4 cut(s)	210, 427, 738, 810
Hpy188III	TCNNGA	4 cut(s)	92, 431, 554, 850
Hpy8I	GTNNAC	5 cut(s)	175, 233, 288, 703, 777
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	2 cut(s)	221, 481
HpyCH4IV	ACGT	2 cut(s)	310, 766
HpyCH4V	TGCA	6 cut(s)	14, 77, 82, 280, 614, 665
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 277, 305, 524, 533, 620
HpyF3I	CTNAG	4 cut(s)	291, 300, 389, 563
HpySE526I	ACGT	2 cut(s)	310, 766
Hsp92II	CATG	8 cut(s)	95, 126, 280, 578, 599, 785, 828, 841
HspAI	GCGC	3 cut(s)	181, 496, 572
Ksp22I	TGATCA	2 cut(s)	51, 264
Kzo9I	GATC	6 cut(s)	51, 94, 264, 379, 427, 489
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	8 cut(s)	33, 290, 302, 329, 387, 567, 669, 719
Lsp1109I	GCAGC	3 cut(s)	598, 646, 699
LweI	GCATC	2 cut(s)	64, 289
MaeI	CTAG	2 cut(s)	620, 713
MaeII	ACGT	2 cut(s)	310, 766
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	6 cut(s)	53, 96, 266, 381, 429, 491
MboI	GATC	6 cut(s)	51, 94, 264, 379, 427, 489
MboII	GAAGA	5 cut(s)	56, 269, 344, 389, 416
MflI	RGATCY	2 cut(s)	379, 489
MluCI	AATT	4 cut(s)	7, 144, 558, 752
MlyI	GAGTC	2 cut(s)	611, 772
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	7 cut(s)	253, 363, 365, 508, 535, 541, 729
Mph1103I	ATGCAT	2 cut(s)	79, 282
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	2 cut(s)	786, 836
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	6 cut(s)	11, 277, 305, 524, 533, 620
NdeII	GATC	6 cut(s)	51, 94, 264, 379, 427, 489
NlaIII	CATG	8 cut(s)	95, 126, 280, 578, 599, 785, 828, 841
NlaIV	GGNNCC	1 cut(s)	552
NmeAIII	GCCGAG	1 cut(s)	625
NsbI	TGCGCA	3 cut(s)	182, 497, 573
NsiI	ATGCAT	2 cut(s)	79, 282
PagI	TCATGA	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	211, 846
PkrI	GCNGC	4 cut(s)	529, 613, 636, 689
PleI	GAGTC	2 cut(s)	610, 772
PpsI	GAGTC	2 cut(s)	610, 772
Ppu21I	YACGTR	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	2 cut(s)	517, 551
PsuI	RGATCY	2 cut(s)	379, 489
RsaI	GTAC	5 cut(s)	218, 313, 657, 710, 725
RsaNI	GTAC	5 cut(s)	217, 312, 656, 709, 724
RseI	CAYNNNNRTG	2 cut(s)	786, 836
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	4 cut(s)	528, 612, 635, 688
Sau3AI	GATC	6 cut(s)	51, 94, 264, 379, 427, 489
Sau96I	GGNCC	2 cut(s)	517, 551
SchI	GAGTC	2 cut(s)	611, 772
ScrFI	CCNGG	1 cut(s)	317
SfaNI	GCATC	2 cut(s)	64, 289
SfcI	CTRYAG	1 cut(s)	472
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	2 cut(s)	786, 836
SmlI	CTYRAG	2 cut(s)	321, 485
SmoI	CTYRAG	2 cut(s)	321, 485
Sse9I	AATT	4 cut(s)	7, 144, 558, 752
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	1 cut(s)	527
SspMI	CTAG	2 cut(s)	620, 713
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	3 cut(s)	198, 252, 446
TaaI	ACNGT	2 cut(s)	221, 481
TaiI	ACGT	2 cut(s)	313, 769
TaqI	TCGA	1 cut(s)	357
TasI	AATT	4 cut(s)	7, 144, 558, 752
TatI	WGTACW	1 cut(s)	723
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	2 cut(s)	211, 846
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	2 cut(s)	406, 486
TseI	GCWGC	3 cut(s)	611, 634, 687
TspDTI	ATGAA	4 cut(s)	80, 265, 591, 816
TspRI	CASTG	2 cut(s)	406, 486
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	2 cut(s)	7, 558
XmiI	GTMKAC	1 cut(s)	702
XspI	CTAG	2 cut(s)	620, 713
Zsp2I	ATGCAT	2 cut(s)	79, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.