Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Reverse (-)

37225341 .. 37235794

Gene Structure 10454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG188600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAGAAGAAGAAGAGTAGAGTACTGATAATCAGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCACAAGTCCCAAAACCTTCGAGCCCTCTCCGATGCCGGCGTCACACTCCTCCAAGTCGGTTCGCTGGAAGACGAAGAGAACCTTGTTGGAGCAGTGAAGCAAGTTGATGTTGTGATTTGTGCTGTTCAGGTCAAACAGATGACGGCACATCGAGCCTTTCAGTTCTGCAAGCAATACAAACGAACTACGGAGTTTCGAAGGTTATGTGAAATCATCAGGAATCATCTGGCTAATCTGAACAAGTATAGAGATCAAAGAGACCGACCTGACCTATCTGCACCTGAGAGCTTGCAACTGTATCTTGATACTAGATTTGAGCAGCTGAAGATAGCTACTGAACTTGAACTGTGGCAGGAAGCGTTCCGCTCTGTTGAAGATATTCATGGATTGATGTGCATGGTTAAGAAAACCCCTAAACCATCGTTGATGGTGGTTTACTATGCGAAGCTCACAGAAATTTTTTGGATTTCTGCTAGCCACCTTAATCATGCTTATGCATGGTTCAAGCTATTCTCGCTTCAGAAAAGCTTTAACAAAAACTTAAGTCAGAAGGATTTGCAGTTAATAGCATCATCTGTTGTCTTGGCTGCACTTTCAGTTCCCCCCTATGATCAGACACGTGCTGCCTCTCACTTGGAACTTGAAAATGAGAAAGAGCGCAATTTGAGGATGGCTAATCTAATTGGCTTTAATCTTGACCCCAAAATCGACAGAGGAGATGTGCTTTCAAGATCTGCTCTTCTATCAGAACTGATTCATCCCATTCACAAGGAAATGATGAAACTCTTCATCGAGCAGATGAGAGAAGTGGAAGAGTCCACCCAACTGTTGACGTGGCAGAAATTATCAAGCGCAAAAGCTAATGAGGGAGAGGGTCCAGAAATTCTAAGAAGTGCGCATGAAGGCAGTTCAAGTGGTCATGCCGAGTCATTAGCTGCAACACTAGCTGAACATCAGCAGCACTTGGTTAGCTTTCAGATAAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

373

Amino Acids

42.48

Weight (kDa)

7.79

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 90	3.1e-16	NmrA-like family
eIF3a_PCI_TPR-like	PF22591	90 - 307	5.9e-63	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1029
AccBSI	CCGCTC	1 cut(s)	498
AciI	CCGC	1 cut(s)	496
AcsI	RAATTY	2 cut(s)	588, 1014
AcuI	CTGAAG	2 cut(s)	476, 635
AcvI	CACGTG	1 cut(s)	752
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	24
AflII	CTTAAG	1 cut(s)	673
AflIII	ACRYGT	1 cut(s)	749
AgsI	TTSAA	6 cut(s)	476, 506, 637, 776, 861, 1044
AjiI	CACGTC	1 cut(s)	966
Alw26I	GTCTC	1 cut(s)	384
ApeKI	GCWGC	5 cut(s)	451, 719, 755, 1067, 1090
ApoI	RAATTY	2 cut(s)	588, 1014
Asp700I	GAANNNNTTC	3 cut(s)	510, 885, 917
AspLEI	GCGC	3 cut(s)	792, 986, 1030
AspS9I	GGNCC	1 cut(s)	1007
AsuHPI	GGTGA	2 cut(s)	47, 80
AsuII	TTCGAA	1 cut(s)	328
AsuNHI	GCTAGC	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	1007
BanII	GRGCYC	1 cut(s)	157
BbrPI	CACGTG	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	5 cut(s)	463, 706, 742, 1054, 1102
BccI	CCATC	3 cut(s)	553, 559, 796
BceAI	ACGGC	1 cut(s)	291
BclI	TGATCA	1 cut(s)	742
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	3 cut(s)	441, 606, 1076
BfrI	CTTAAG	1 cut(s)	673
BglII	AGATCT	1 cut(s)	863
BisI	GCNGC	5 cut(s)	452, 720, 756, 1068, 1091
BlsI	GCNGC	5 cut(s)	453, 721, 757, 1069, 1092
BmcAI	AGTACT	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	1007
BmgBI	CACGTC	1 cut(s)	966
BmgT120I	GGNCC	1 cut(s)	1007
BmiI	GGNNCC	1 cut(s)	1008
BmsI	GCATC	2 cut(s)	154, 710
BmtI	GCTAGC	1 cut(s)	609
BpiI	GAAGAC	1 cut(s)	207
Bpu14I	TTCGAA	1 cut(s)	328
BsaAI	YACGTR	1 cut(s)	752
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse118I	RCCGGY	1 cut(s)	167
BseGI	GGATG	2 cut(s)	807, 889
BseMII	CTCAG	1 cut(s)	405
BseRI	GAGGAG	2 cut(s)	170, 861
BseXI	GCAGC	5 cut(s)	463, 706, 742, 1054, 1102
BsgI	GTGCAG	2 cut(s)	393, 705
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	384
Bsp119I	TTCGAA	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	382, 742, 863
BspACI	CCGC	1 cut(s)	496
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	1008
BspOI	GCTAGC	1 cut(s)	609
BspQI	GCTCTTC	1 cut(s)	876
BspT104I	TTCGAA	1 cut(s)	328
BspTI	CTTAAG	1 cut(s)	673
BspTNI	GGTCTC	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssMI	GATC	3 cut(s)	382, 742, 863
BssNI	GRCGYC	1 cut(s)	171
Bst4CI	ACNGT	3 cut(s)	429, 480, 960
Bst6I	CTCTTC	5 cut(s)	8, 201, 876, 923, 939
BstACI	GRCGYC	1 cut(s)	171
BstAFI	CTTAAG	1 cut(s)	673
BstBAI	YACGTR	1 cut(s)	752
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	5 cut(s)	73, 169, 302, 422, 607
BstDEI	CTNAG	2 cut(s)	414, 1019
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	807, 889
BstHHI	GCGC	3 cut(s)	792, 986, 1030
BstKTI	GATC	3 cut(s)	385, 745, 866
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	3 cut(s)	382, 742, 863
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 646, 1076
BstPI	GGTNACC	1 cut(s)	53
BstV1I	GCAGC	5 cut(s)	463, 706, 742, 1054, 1102
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	863
BstYI	RGATCY	1 cut(s)	863
BtrI	CACGTC	1 cut(s)	966
BtsCI	GGATG	2 cut(s)	807, 889
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	5 cut(s)	73, 169, 302, 422, 607
CfoI	GCGC	3 cut(s)	792, 986, 1030
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	1007
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	6 cut(s)	515, 529, 620, 630, 1031, 1052
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	2 cut(s)	414, 1019
DpnI	GATC	3 cut(s)	384, 744, 865
DpnII	GATC	3 cut(s)	382, 742, 863
Eam1104I	CTCTTC	5 cut(s)	8, 201, 876, 923, 939
EarI	CTCTTC	5 cut(s)	8, 201, 876, 923, 939
Eco24I	GRGCYC	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	1007
Eco57I	CTGAAG	2 cut(s)	476, 635
Eco72I	CACGTG	1 cut(s)	752
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	631
EcoT38I	GRGCYC	1 cut(s)	157
FaeI	CATG	6 cut(s)	518, 532, 623, 633, 1034, 1055
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	6 cut(s)	514, 528, 619, 629, 1030, 1051
FbaI	TGATCA	1 cut(s)	742
Fnu4HI	GCNGC	5 cut(s)	452, 720, 756, 1068, 1091
FokI	GGATG	2 cut(s)	814, 876
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	5 cut(s)	452, 720, 756, 1068, 1091
FspAI	RTGCGCAY	1 cut(s)	1029
FspBI	CTAG	3 cut(s)	441, 606, 1076
FspI	TGCGCA	1 cut(s)	1029
GlaI	GCGC	3 cut(s)	791, 985, 1029
GluI	GCNGC	5 cut(s)	452, 720, 756, 1068, 1091
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	3 cut(s)	792, 986, 1030
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	6 cut(s)	518, 532, 623, 633, 1034, 1055
Hin6I	GCGC	3 cut(s)	790, 984, 1028
HinP1I	GCGC	3 cut(s)	790, 984, 1028
HincII	GTYRAC	1 cut(s)	963
HindII	GTYRAC	1 cut(s)	963
HindIII	AAGCTT	1 cut(s)	658
HinfI	GANTC	4 cut(s)	352, 886, 947, 1058
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	47, 80
Hpy166II	GTNNAC	3 cut(s)	568, 951, 963
Hpy188III	TCNNGA	5 cut(s)	349, 434, 827, 861, 1010
Hpy8I	GTNNAC	3 cut(s)	568, 951, 963
HpyAV	CCTTC	5 cut(s)	130, 158, 324, 676, 1028
HpyCH4III	ACNGT	3 cut(s)	429, 480, 960
HpyCH4IV	ACGT	2 cut(s)	751, 965
HpyCH4V	TGCA	8 cut(s)	300, 410, 424, 528, 629, 691, 722, 1070
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 646, 1076
HpyF3I	CTNAG	2 cut(s)	414, 1019
HpySE526I	ACGT	2 cut(s)	751, 965
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	6 cut(s)	518, 532, 623, 633, 1034, 1055
HspAI	GCGC	3 cut(s)	790, 984, 1028
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	3 cut(s)	382, 742, 863
LguI	GCTCTTC	1 cut(s)	876
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	5 cut(s)	463, 706, 742, 1054, 1102
LweI	GCATC	2 cut(s)	154, 710
MaeI	CTAG	3 cut(s)	441, 606, 1076
MaeII	ACGT	2 cut(s)	751, 965
MaeIII	GTNAC	2 cut(s)	53, 172
MalI	GATC	3 cut(s)	384, 744, 865
MbiI	CCGCTC	1 cut(s)	498
MboI	GATC	3 cut(s)	382, 742, 863
MflI	RGATCY	1 cut(s)	863
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	5 cut(s)	588, 793, 813, 974, 1014
MlyI	GAGTC	2 cut(s)	956, 1067
MmeI	TCCRAC	3 cut(s)	133, 150, 199
MnlI	CCTC	8 cut(s)	86, 167, 191, 769, 792, 839, 991, 997
Mph1103I	ATGCAT	1 cut(s)	631
MroNI	GCCGGC	1 cut(s)	167
MroXI	GAANNNNTTC	3 cut(s)	510, 885, 917
MseI	TTAA	6 cut(s)	534, 615, 663, 674, 695, 822
MslI	CAYNNNNRTG	1 cut(s)	624
MspA1I	CMGCKG	1 cut(s)	454
MspCI	CTTAAG	1 cut(s)	673
MspI	CCGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	284, 646, 1076
NaeI	GCCGGC	1 cut(s)	169
NdeII	GATC	3 cut(s)	382, 742, 863
NgoMIV	GCCGGC	1 cut(s)	167
NheI	GCTAGC	1 cut(s)	605
NlaIII	CATG	6 cut(s)	518, 532, 623, 633, 1034, 1055
NlaIV	GGNNCC	1 cut(s)	1008
NmeAIII	GCCGAG	1 cut(s)	1081
NmuCI	GTSAC	2 cut(s)	53, 172
NsbI	TGCGCA	1 cut(s)	1029
NsiI	ATGCAT	1 cut(s)	631
NspV	TTCGAA	1 cut(s)	328
PciSI	GCTCTTC	1 cut(s)	876
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdiI	GCCGGC	1 cut(s)	169
PdmI	GAANNNNTTC	3 cut(s)	510, 885, 917
PfeI	GAWTC	2 cut(s)	352, 886
PkrI	GCNGC	5 cut(s)	453, 721, 757, 1069, 1092
PleI	GAGTC	2 cut(s)	955, 1066
PmaCI	CACGTG	1 cut(s)	752
PmlI	CACGTG	1 cut(s)	752
PpsI	GAGTC	2 cut(s)	955, 1066
Ppu21I	YACGTR	1 cut(s)	752
PspCI	CACGTG	1 cut(s)	752
PspEI	GGTNACC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	1008
PspPI	GGNCC	1 cut(s)	1007
PsuI	RGATCY	1 cut(s)	863
PvuII	CAGCTG	1 cut(s)	454
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	624
SapI	GCTCTTC	1 cut(s)	876
SaqAI	TTAA	6 cut(s)	534, 615, 663, 674, 695, 822
SatI	GCNGC	5 cut(s)	452, 720, 756, 1068, 1091
Sau3AI	GATC	3 cut(s)	382, 742, 863
Sau96I	GGNCC	1 cut(s)	1007
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	2 cut(s)	956, 1067
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	2 cut(s)	154, 710
SfuI	TTCGAA	1 cut(s)	328
SinI	GGWCC	1 cut(s)	1007
SmiMI	CAYNNNNRTG	1 cut(s)	624
SmlI	CTYRAG	1 cut(s)	673
SmoI	CTYRAG	1 cut(s)	673
Sse9I	AATT	5 cut(s)	588, 793, 813, 974, 1014
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	3 cut(s)	441, 606, 1076
TaaI	ACNGT	3 cut(s)	429, 480, 960
TaiI	ACGT	2 cut(s)	754, 968
TaqI	TCGA	5 cut(s)	151, 283, 328, 840, 924
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	5 cut(s)	588, 793, 813, 974, 1014
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	352, 886
Tru1I	TTAA	6 cut(s)	534, 615, 663, 674, 695, 822
Tru9I	TTAA	6 cut(s)	534, 615, 663, 674, 695, 822
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	2 cut(s)	53, 172
TseI	GCWGC	5 cut(s)	451, 719, 755, 1067, 1090
Tsp45I	GTSAC	2 cut(s)	53, 172
TspDTI	ATGAA	5 cut(s)	503, 878, 910, 926, 1047
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	231
Vha464I	CTTAAG	1 cut(s)	673
VpaK11BI	GGWCC	1 cut(s)	1007
XapI	RAATTY	2 cut(s)	588, 1014
XmnI	GAANNNNTTC	3 cut(s)	510, 885, 917
XspI	CTAG	3 cut(s)	441, 606, 1076
ZrmI	AGTACT	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.