Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Reverse (-)

86087524 .. 86104999

Gene Structure 17476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG542500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGCAAATTTCAGGGATGGACTACAACTTCTATTCAAACAAAGCCGAGATTAGGCGTCTTGTGGAAGCTCAAGGCATTCCCTACACTTTTATTTCCTGCAATTTCTATACGAGCTATTTGCTTCCTTCACTTGTGCAGCCGGGCCTCAAAGCGCCTCCAAGGGACAAAGTCACGATTTTCGGGGACGGAAATACTAAAGGCGTTTTTGTCAAGGAAATTGATGTAGCTGCCTTCACTATCAGGACATTGGACGATCCACGAACCTTGAACAAAGTGTTGTATTTTAGTTCTACTGCTATTGAGAGGATTTGCATGGCTTGTTCACGGGCTCTAATGACAGCACATCGAGCCTTTCAGTTCTGCAAGCAATACAAACGAACTACGGAGTTTCGAAGGTTATGTGAAATCATCAGGAATCATCTGGCTAATCTGAACAAGTATAGAGATCAAAGAGACCGACCTGACCTATCTGCACCTGAGAGCTTGCAACTGTATCTTGATACTAGATTTGAGCAGCTGAAGATAGCTACTGAACTTGAACTGTGGCAGGAAGCGTTCCGCTCTATTGAAGATATTCATGGATTGATGTGCATGGTTAAGAAAACCCCTAAACCATCGTTGATGACACGTGCTGCCTCTCACTTGGAACTTGAAAATGAGAAAGAGCGCAATTTGAGGATGGCTAATCTAATTGGCTTTAATCTTGACCCCAAAATCGACAGAGGAGATGTGCTTTCAAGATCTGCTCTTCTATCAGAACTGATTCATCCCATTCACAAGGAAATGATGAAACTCTTCATCGAGCAGATGAGAGAAGTGGAAGAGTCCACCCAACTGTTGACGTGGCAGAAATTATCAGGCGTTGGACACATGCTTTACAGCGCAAAAGCTAATGAGGGAGAGGGTCCAGAAATTCTAAGAAGTGCGCATGAAGGCAGTTCAAGTGGTCATGCCGAGTCATTAGCTGTAACACTAGCTGAACATCAGCAGCACTTGGTTAGCTTTCAGGTTCTAGAAGGGAAGCCAGTAACTTGTGAGATATTTCAGTGGCAGAATGACAAGATGTCAAGAAACAATTGCCAAATGCTTGACGTGGCAGACATAATTTCATATAGCAAAACCAAACCGAACCAAACTAAACCTGCAAACCAGCAAGACAAAGAGGCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

390

Amino Acids

44.73

Weight (kDa)

7.62

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	8 - 94	4.2e-16	NmrA-like family
eIF3a_PCI_TPR-like	PF22591	113 - 210	4.5e-40	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	927
Acc36I	ACCTGC	1 cut(s)	1150
AccBSI	CCGCTC	1 cut(s)	561
AciI	CCGC	1 cut(s)	559
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	2 cut(s)	6, 912
AcuI	CTGAAG	1 cut(s)	539
AcvI	CACGTG	1 cut(s)	629
AcyI	GRCGYC	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	51
AflIII	ACRYGT	1 cut(s)	626
AgsI	TTSAA	7 cut(s)	36, 268, 539, 569, 653, 738, 942
AhdI	GACNNNNNGTC	1 cut(s)	1063
AjiI	CACGTC	2 cut(s)	843, 1093
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	2 cut(s)	142, 1164
ApeKI	GCWGC	5 cut(s)	136, 227, 514, 632, 988
ApoI	RAATTY	2 cut(s)	6, 912
Asp700I	GAANNNNTTC	3 cut(s)	573, 762, 794
AspLEI	GCGC	4 cut(s)	154, 669, 884, 928
AspS9I	GGNCC	3 cut(s)	142, 905, 1165
AsuC2I	CCSGG	1 cut(s)	141
AsuII	TTCGAA	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	905
BanII	GRGCYC	1 cut(s)	331
BbrPI	CACGTG	1 cut(s)	629
BbvI	GCAGC	5 cut(s)	148, 214, 526, 619, 1000
BccI	CCATC	3 cut(s)	10, 622, 673
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	3 cut(s)	504, 974, 1013
BfoI	RGCGCY	1 cut(s)	155
BfuAI	ACCTGC	1 cut(s)	1150
BglII	AGATCT	1 cut(s)	740
BisI	GCNGC	5 cut(s)	137, 228, 515, 633, 989
BlsI	GCNGC	5 cut(s)	138, 229, 516, 634, 990
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	905
BmeRI	GACNNNNNGTC	1 cut(s)	1063
BmgBI	CACGTC	2 cut(s)	843, 1093
BmgT120I	GGNCC	3 cut(s)	142, 905, 1165
BmiI	GGNNCC	1 cut(s)	906
BmrFI	CCNGG	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	391
BpuEI	CTTGAG	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	629
BsaHI	GRCGYC	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	1025
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	3 cut(s)	21, 684, 766
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	1 cut(s)	1025
BseRI	GAGGAG	1 cut(s)	738
BseXI	GCAGC	5 cut(s)	148, 214, 526, 619, 1000
BsgI	GTGCAG	2 cut(s)	155, 456
BshFI	GGCC	2 cut(s)	144, 1166
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	2 cut(s)	176, 197
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	2 cut(s)	176, 197
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	144, 1166
Bso31I	GGTCTC	1 cut(s)	447
Bsp119I	TTCGAA	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	3 cut(s)	253, 445, 740
BspACI	CCGC	1 cut(s)	559
BspANI	GGCC	2 cut(s)	144, 1166
BspCNI	CTCAG	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	906
BspMI	ACCTGC	1 cut(s)	1150
BspPI	GGATC	1 cut(s)	248
BspQI	GCTCTTC	1 cut(s)	753
BspT104I	TTCGAA	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	447
BsrBI	CCGCTC	1 cut(s)	561
BsrI	ACTGG	1 cut(s)	1025
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	3 cut(s)	253, 445, 740
BssNI	GRCGYC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	158
Bst4CI	ACNGT	3 cut(s)	492, 543, 837
Bst6I	CTCTTC	3 cut(s)	753, 800, 816
BstACI	GRCGYC	1 cut(s)	55
BstBAI	YACGTR	1 cut(s)	629
BstBI	TTCGAA	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	365, 485
BstDEI	CTNAG	2 cut(s)	477, 917
BstF5I	GGATG	3 cut(s)	21, 684, 766
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	4 cut(s)	154, 669, 884, 928
BstKTI	GATC	3 cut(s)	256, 448, 743
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	3 cut(s)	253, 445, 740
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	874
BstSCI	CCNGG	1 cut(s)	139
BstV1I	GCAGC	5 cut(s)	148, 214, 526, 619, 1000
BstX2I	RGATCY	1 cut(s)	740
BstYI	RGATCY	1 cut(s)	740
BsuRI	GGCC	2 cut(s)	144, 1166
BtrI	CACGTC	2 cut(s)	843, 1093
BtsCI	GGATG	3 cut(s)	21, 684, 766
BtsIMutI	CAGTG	1 cut(s)	1052
BveI	ACCTGC	1 cut(s)	1150
Cac8I	GCNNGC	2 cut(s)	365, 485
CfoI	GCGC	4 cut(s)	154, 669, 884, 928
Cfr13I	GGNCC	3 cut(s)	142, 905, 1165
CseI	GACGC	1 cut(s)	44
CspCI	CAANNNNNGTGG	2 cut(s)	246, 281
CviAII	CATG	6 cut(s)	313, 578, 592, 871, 929, 950
DdeI	CTNAG	2 cut(s)	477, 917
DpnI	GATC	3 cut(s)	255, 447, 742
DpnII	GATC	3 cut(s)	253, 445, 740
DriI	GACNNNNNGTC	1 cut(s)	1063
Eam1104I	CTCTTC	3 cut(s)	753, 800, 816
Eam1105I	GACNNNNNGTC	1 cut(s)	1063
EarI	CTCTTC	3 cut(s)	753, 800, 816
Eco130I	CCWWGG	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	331
Eco31I	GGTCTC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	905
Eco57I	CTGAAG	1 cut(s)	539
Eco72I	CACGTG	1 cut(s)	629
EcoT14I	CCWWGG	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	6 cut(s)	316, 581, 595, 874, 932, 953
FaqI	GGGAC	2 cut(s)	176, 197
FatI	CATG	6 cut(s)	312, 577, 591, 870, 928, 949
Fnu4HI	GCNGC	5 cut(s)	137, 228, 515, 633, 989
FokI	GGATG	3 cut(s)	28, 691, 753
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	5 cut(s)	137, 228, 515, 633, 989
FspAI	RTGCGCAY	1 cut(s)	927
FspBI	CTAG	3 cut(s)	504, 974, 1013
FspI	TGCGCA	1 cut(s)	927
GlaI	GCGC	4 cut(s)	153, 668, 883, 927
GluI	GCNGC	5 cut(s)	137, 228, 515, 633, 989
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	144, 1166
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	4 cut(s)	154, 669, 884, 928
Hin1I	GRCGYC	1 cut(s)	55
Hin1II	CATG	6 cut(s)	316, 581, 595, 874, 932, 953
Hin6I	GCGC	4 cut(s)	152, 667, 882, 926
HinP1I	GCGC	4 cut(s)	152, 667, 882, 926
HincII	GTYRAC	1 cut(s)	840
HindII	GTYRAC	1 cut(s)	840
HinfI	GANTC	4 cut(s)	415, 763, 824, 956
HpaII	CCGG	1 cut(s)	140
Hpy166II	GTNNAC	3 cut(s)	323, 828, 840
Hpy188I	TCNGA	2 cut(s)	432, 757
Hpy188III	TCNNGA	9 cut(s)	172, 241, 412, 497, 704, 738, 908, 1013, 1068
Hpy8I	GTNNAC	3 cut(s)	323, 828, 840
HpyAV	CCTTC	5 cut(s)	135, 241, 387, 926, 1010
HpyCH4III	ACNGT	3 cut(s)	492, 543, 837
HpyCH4IV	ACGT	3 cut(s)	628, 842, 1092
HpyCH4V	TGCA	9 cut(s)	4, 99, 136, 312, 363, 473, 487, 591, 1145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	2 cut(s)	477, 917
HpySE526I	ACGT	3 cut(s)	628, 842, 1092
Hsp92I	GRCGYC	1 cut(s)	55
Hsp92II	CATG	6 cut(s)	316, 581, 595, 874, 932, 953
HspAI	GCGC	4 cut(s)	152, 667, 882, 926
Kzo9I	GATC	3 cut(s)	253, 445, 740
LguI	GCTCTTC	1 cut(s)	753
Lsp1109I	GCAGC	5 cut(s)	148, 214, 526, 619, 1000
MaeI	CTAG	3 cut(s)	504, 974, 1013
MaeII	ACGT	3 cut(s)	628, 842, 1092
MaeIII	GTNAC	3 cut(s)	169, 967, 1027
MalI	GATC	3 cut(s)	255, 447, 742
MbiI	CCGCTC	1 cut(s)	561
MboI	GATC	3 cut(s)	253, 445, 740
MboII	GAAGA	5 cut(s)	532, 581, 740, 787, 833
MfeI	CAATTG	1 cut(s)	1075
MflI	RGATCY	1 cut(s)	740
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	9 cut(s)	6, 100, 216, 670, 690, 851, 912, 1075, 1104
MlyI	GAGTC	2 cut(s)	833, 965
MmeI	TCCRAC	1 cut(s)	844
MnlI	CCTC	9 cut(s)	155, 165, 297, 646, 669, 716, 889, 895, 1156
MroXI	GAANNNNTTC	3 cut(s)	573, 762, 794
MseI	TTAA	2 cut(s)	597, 699
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	141
MunI	CAATTG	1 cut(s)	1075
Mva1269I	GAATGC	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	347
NciI	CCSGG	1 cut(s)	141
NdeII	GATC	3 cut(s)	253, 445, 740
NlaIII	CATG	6 cut(s)	316, 581, 595, 874, 932, 953
NlaIV	GGNNCC	1 cut(s)	906
NmeAIII	GCCGAG	2 cut(s)	70, 979
NmuCI	GTSAC	1 cut(s)	169
NsbI	TGCGCA	1 cut(s)	927
NspI	RCATGY	1 cut(s)	874
NspV	TTCGAA	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	753
PctI	GAATGC	1 cut(s)	75
PdmI	GAANNNNTTC	3 cut(s)	573, 762, 794
PfeI	GAWTC	2 cut(s)	415, 763
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	138, 229, 516, 634, 990
PleI	GAGTC	2 cut(s)	832, 964
PmaCI	CACGTG	1 cut(s)	629
PmlI	CACGTG	1 cut(s)	629
PpsI	GAGTC	2 cut(s)	832, 964
Ppu21I	YACGTR	1 cut(s)	629
PspCI	CACGTG	1 cut(s)	629
PspN4I	GGNNCC	1 cut(s)	906
PspPI	GGNCC	3 cut(s)	142, 905, 1165
PsuI	RGATCY	1 cut(s)	740
PsyI	GACNNNGTC	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	517
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	597, 699
SatI	GCNGC	5 cut(s)	137, 228, 515, 633, 989
Sau3AI	GATC	3 cut(s)	253, 445, 740
Sau96I	GGNCC	3 cut(s)	142, 905, 1165
SchI	GAGTC	2 cut(s)	833, 965
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	331
SfuI	TTCGAA	1 cut(s)	391
SinI	GGWCC	1 cut(s)	905
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	9 cut(s)	6, 100, 216, 670, 690, 851, 912, 1075, 1104
SsiI	CCGC	1 cut(s)	559
SspMI	CTAG	3 cut(s)	504, 974, 1013
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	3 cut(s)	492, 543, 837
TaiI	ACGT	3 cut(s)	631, 845, 1095
TaqI	TCGA	4 cut(s)	346, 391, 717, 801
TaqII	GACCGA	1 cut(s)	471
TasI	AATT	9 cut(s)	6, 100, 216, 670, 690, 851, 912, 1075, 1104
TfiI	GAWTC	2 cut(s)	415, 763
Tru1I	TTAA	2 cut(s)	597, 699
Tru9I	TTAA	2 cut(s)	597, 699
TscAI	CASTG	1 cut(s)	1052
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	5 cut(s)	136, 227, 514, 632, 988
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	6 cut(s)	566, 755, 787, 803, 945, 1098
TspGWI	ACGGA	2 cut(s)	201, 398
TspRI	CASTG	1 cut(s)	1052
Tth111I	GACNNNGTC	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	905
XapI	RAATTY	2 cut(s)	6, 912
XbaI	TCTAGA	1 cut(s)	1012
XceI	RCATGY	1 cut(s)	874
XmnI	GAANNNNTTC	3 cut(s)	573, 762, 794
XspI	CTAG	3 cut(s)	504, 974, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.