Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Forward (+)

50542609 .. 50552248

Gene Structure 9640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCGAGTTCCTTGGAAGAGGTGATCAAGCACTTCATGCATCCGTCAACCGAGAAAGCCGAGCAGGCACGTACCCGTGCTCAAGCATTAGAAGAAGCACTTGATGTTGATGACCTCGAAGCGTATAAGAGGCCCGAAGATCTAATGCCGAGTTATGTCGGTGGAGAGAAAGGAAAAGATAGGTCTGATCGTAGGTCACACAATTATGCAAAAGCTAATGAGGGAGAGGGTCCAGAAATTCTAAGAAGTGCGCATGAAGGCAGTTCAAGTGGTCATGCCGAGTCATTAGCTGCAACACTAGCTGAACATCAGCAGCACTTGGTTAGCTTTCAGTATCACCGTTCGATTATATTCTTTGACCGTCATGCAGGGAAATTGCGAAACATCTCTCTCTTCCTCCGGTCAAGCTACACCGCAAGTATGCTTGCCGAGGATGCCATCAAGGCAGCTATTAAAGACTATCAAACAAAGCTGGCTAATGAAGGATTGCTTATCATCTTTGCCTACAAGAGAGCTTCGCAAGAGCAAATGAAGGATATCGACATTGAGTGTGCCTCTTCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

188

Amino Acids

21.09

Weight (kDa)

5.85

Isoelectric Point (pI)

68.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	252
AciI	CCGC	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	237
AfaI	GTAC	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	267, 561
AluBI	AGCT	8 cut(s)	215, 290, 302, 327, 408, 449, 472, 515
AluI	AGCT	8 cut(s)	215, 290, 302, 327, 408, 449, 472, 515
Alw21I	GWGCWC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	3 cut(s)	290, 313, 446
ApoI	RAATTY	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	2 cut(s)	132, 230
AsuHPI	GGTGA	2 cut(s)	34, 329
AvaII	GGWCC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	3 cut(s)	277, 325, 458
BccI	CCATC	1 cut(s)	446
BclI	TGATCA	1 cut(s)	24
BfaI	CTAG	1 cut(s)	299
BglI	GCCNNNNNGGC	2 cut(s)	65, 443
BglII	AGATCT	1 cut(s)	139
BisI	GCNGC	3 cut(s)	291, 314, 447
BlsI	GCNGC	3 cut(s)	292, 315, 448
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	132, 230
BmiI	GGNNCC	1 cut(s)	231
BmsI	GCATC	2 cut(s)	49, 424
BplI	GAGNNNNNCTC	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	12, 429
BsaWI	WCCGGW	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	12, 429
BseGI	GGATG	2 cut(s)	40, 439
BseXI	GCAGC	3 cut(s)	277, 325, 458
BshFI	GGCC	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	400
BsnI	GGCC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	3 cut(s)	24, 139, 187
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	12, 429
BssMI	GATC	3 cut(s)	24, 139, 187
BssT1I	CCWWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	341, 362
Bst6I	CTCTTC	3 cut(s)	12, 398, 562
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	3 cut(s)	66, 426, 474
BstDEI	CTNAG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	40, 439
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	3 cut(s)	27, 142, 190
BstMBI	GATC	3 cut(s)	24, 139, 187
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 65, 299, 434, 443
BstV1I	GCAGC	3 cut(s)	277, 325, 458
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	40, 439
Cac8I	GCNNGC	3 cut(s)	66, 426, 474
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	132, 230
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	4 cut(s)	37, 254, 275, 365
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	3 cut(s)	26, 141, 189
DpnII	GATC	3 cut(s)	24, 139, 187
Eam1104I	CTCTTC	3 cut(s)	12, 398, 562
EarI	CTCTTC	3 cut(s)	12, 398, 562
Eco130I	CCWWGG	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	230
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	4 cut(s)	40, 257, 278, 368
FaiI	YATR	9 cut(s)	38, 126, 156, 207, 255, 276, 350, 366, 422
FalI	AAGNNNNNCTT	4 cut(s)	84, 116, 474, 506
FatI	CATG	4 cut(s)	36, 253, 274, 364
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	291, 314, 447
FokI	GGATG	2 cut(s)	27, 446
Fsp4HI	GCNGC	3 cut(s)	291, 314, 447
FspAI	RTGCGCAY	1 cut(s)	252
FspBI	CTAG	1 cut(s)	299
FspI	TGCGCA	1 cut(s)	252
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	3 cut(s)	291, 314, 447
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	1 cut(s)	400
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	4 cut(s)	40, 257, 278, 368
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	1 cut(s)	400
HphI	GGTGA	2 cut(s)	34, 329
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	3 cut(s)	251, 476, 526
HpyCH4III	ACNGT	2 cut(s)	341, 362
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	40, 209, 293, 368
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 65, 299, 434, 443
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	4 cut(s)	40, 257, 278, 368
HspAI	GCGC	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	24, 139, 187
LpnPI	CCDG	5 cut(s)	50, 246, 354, 413, 458
Lsp1109I	GCAGC	3 cut(s)	277, 325, 458
LweI	GCATC	2 cut(s)	49, 424
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	3 cut(s)	26, 141, 189
MboI	GATC	3 cut(s)	24, 139, 187
MboII	GAAGA	5 cut(s)	29, 104, 149, 385, 549
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	4 cut(s)	202, 237, 374, 562
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	8 cut(s)	13, 123, 125, 214, 220, 407, 424, 565
Mph1103I	ATGCAT	1 cut(s)	42
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	5 cut(s)	37, 65, 299, 434, 443
NdeII	GATC	3 cut(s)	24, 139, 187
NlaIII	CATG	4 cut(s)	40, 257, 278, 368
NlaIV	GGNNCC	1 cut(s)	231
NmeAIII	GCCGAG	4 cut(s)	85, 174, 304, 454
NmuCI	GTSAC	1 cut(s)	195
NsbI	TGCGCA	1 cut(s)	252
NsiI	ATGCAT	1 cut(s)	42
PkrI	GCNGC	3 cut(s)	292, 315, 448
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	2 cut(s)	132, 230
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	3 cut(s)	291, 314, 447
Sau3AI	GATC	3 cut(s)	24, 139, 187
Sau96I	GGNCC	2 cut(s)	132, 230
SchI	GAGTC	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	82
SfaNI	GCATC	2 cut(s)	49, 424
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	4 cut(s)	202, 237, 374, 562
SsiI	CCGC	1 cut(s)	414
SspMI	CTAG	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	341, 362
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	4 cut(s)	5, 117, 344, 540
TasI	AATT	4 cut(s)	202, 237, 374, 562
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	3 cut(s)	290, 313, 446
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	4 cut(s)	25, 270, 495, 545
TspGWI	ACGGA	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	237
XspI	CTAG	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.