Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Forward (+)

5986049 .. 5992994

Gene Structure 6946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG076000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2328 bp

ATGACGGCACATCGAGCCTTTCAGTTCTGCAAGCAATACAAACGGACTACGGAGTTTCGAAGGTTATGTGAAATCATCAGGAATCATCTGGCAAATCTGAACAAGTATAGAGATCAAAGAGACCGACCTGACCTATCTGCACCTGAGAGCTTGCAACTGTATCTTGATACTAGATTTGAGCAGCTGAAGATAGCTACTGAACTTGAACTGTGGCAGGAAGCGTTCCGCTCTGTTGAAGATATTCATGGATTGATGTGCATGGTTAAGAAAACCCCTAAACCATCGTTGATGGTGGTTTACTATGCCAAGCTCACAGAAATTTTTTGGATTTCTGCTAGCCATCTTAATCATGCTTATGCATGGTTCAAGCTATTCTCGCTTCAGAAAAGCTTTAACAAAAACTTAAGCCAGAAGGATTTGCAGTTAATAGCATCATCTGTTGTCTTGGCTGCACTTTCAGTTCCCCCCTATGATCAGACACGTGCTGCCTCTCACTTGGAACTTGAAAATGAGAAAGAGCGCAATTTGAGGATGGCTAATCTAATTGGCTTTAATCTTGACCCCAAAATCGACAGAGGAGATGTGCTTTCAAGATCTGCTCTTCTATCGGAACTGGTCTCCAAAGGTGTCTTGAGCTGTGCAACCCAGGAAGTAAAGGATCTCTTCCATCTCCTGGAGCATGAATTTCTACCTCTCGACCTTGCTGTAAAGATACAACCACTGTTGACTAAAATCTCAAAATTTGGGGGTAAGCTGGCTTCAGCTTCTTCTGTTCCTGAAGTGCAACTGTCTCAATATGTTCCTGCCCTTGAAAAGCTTGGTACTTTGAGGTTGCTCCAGCAGGTGTCTCGGGTGTATCAGTCGATGAAGATTGAACATCTATCTCGGATGATCCCATTTTATGACTTTTCTGTTGTTGAGAAGATATATGTGGATGCCGTTAAACATAACTTCATAGCTATGAAAGTCGACCATATGAAGGGTGTTATGATGTTTGGTAACTTGGGTGTGGAGTCAGATGGATTTCGTGATCACTTGACTAAATTTGCTGAGTCTTTAAACAAGACCAGGGCTATGGTCTACCCTCCTCCAAAGAAAGCATCTAGACTTGGTGAAATTCTTCCTTCTTTGGCAGAGACTGTAGATAAGGAACATAAAAGGCTTCTTGCTAGGAAATCAATCATTGAGAAAAGAAAGGAAGAACAGGAACGTCAACTTCTGGAAATGGAACGTGAGGAAGAGTCGAGGAGGCTGAAGCAACAGAAAATAACTGAAGAGGCAGAGGCGAAAAGGCTTGCCACCGAGTCTGAAATAAGGAAGAAACAAAGGCTCCTGAAGGAAATAGAGGAAAAAGAACTTGAAGAAGCACAGCAACTCCTTCAAGATGTAAGCAAAAAGAAGAAGGGAAAGAAGCCACTTTTGGATGGGGAAAAGGTGACCAAGCAAACTTTATTGGACATGGCCGTGCATGAACAGATCAAGGAGAGAGAAGAAAGGGAGAAGAAATTAACAAAACTTTCCAAAACAATGGATCACTTGGAAAGAGCTAAAAGGGAAGAGTCTGCTCCTCTGATTGAAGCTGCATATCAACAACGTTTAGTGGAAGAAAGGGTGCTTCATGAACGTGAGCAACAGCTGGAAATTGAGCTGAGCCAACAGCGTCATGAAGGAGATGTCAAGGAGAAGAATAGGCTAGTGCGGATGTTGAACAATAAGACTATCTTCCAGGAAAGGGTTGTGCATCGAAGGCATGCAGAGTTTGAAAGGCGGAGGGCAGAGAGAGAAGAACAAATCAGTCGAATGATTCAGGCCAGGAAACTGGAGAGGGAGGCAATGAGGAAGAAAATATTTTATGTGAGATCTGAAGAGGAAAGGCTAAAGAAGCTGCATGAAGAAGAGGAAGCCCGCAAGCGTGAAGAAGCCGAGCGAAGGAGGAGAGAAGAAGCTGAACGCAAAGCAAAATTGGATGAGATTGCTGAAAAGCAGAGGCTAAGGGAGAGGGAATTGGAGGAAAAAGCCGAAAGGCAGAAGAGAGAAATGCTTGCTAGGCCGGCCATTGAGCCTCGTCCAGTTGAGCCTGTAGTTCCTGCTCCTGCTGCTCCTATTGCTGTCACTGCTGCTGCACCCAACGCTCCTGGAAGGTATGTTCCTAGGCATCGGCGACAAGAAGCCGCCCCGGCTGCAGAACCTGATCGTAGGGGAATCAGGCCTGATGAGCGCCCAGCCCTGTCAAATGATAGGTGGCGTAGTGATCGCAGTGAGGAGCGAAGACCACCAGCCTTTGGTGCGGGTTCAAAATCGACTTGGTCCTCATCCAGACCGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

775

Amino Acids

90.84

Weight (kDa)

9.53

Isoelectric Point (pI)

63.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF3a_PCI_TPR-like	PF22591	2 - 231	1.1e-66	eIF3a, PCI domain, TPR-like region
PCI	PF01399	262 - 332	2.7e-06	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	832
Acc36I	ACCTGC	1 cut(s)	832
AccB7I	CCANNNNNTGG	2 cut(s)	673, 2282
AccBSI	CCGCTC	1 cut(s)	228
AccI	GTMKAC	2 cut(s)	969, 1080
AccII	CGCG	1 cut(s)	2323
AciI	CCGC	7 cut(s)	226, 1699, 1768, 1906, 2172, 2288, 2321
AclI	AACGTT	1 cut(s)	1594
AclWI	GGATC	3 cut(s)	666, 886, 1539
AcoI	YGGCCR	2 cut(s)	1461, 2052
AcsI	RAATTY	5 cut(s)	318, 683, 740, 1043, 1116
AcuI	CTGAAG	8 cut(s)	206, 365, 744, 798, 1274, 1293, 1355, 1884
AcvI	CACGTG	1 cut(s)	482
AfaI	GTAC	1 cut(s)	823
AfiI	CCNNNNNNNGG	5 cut(s)	673, 979, 1732, 1929, 2282
AflII	CTTAAG	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	479
AjnI	CCWGG	6 cut(s)	645, 672, 1067, 1725, 1811, 2134
AjuI	GAANNNNNNNTTGG	2 cut(s)	1403, 1435
AloI	GAACNNNNNNTCC	2 cut(s)	2130, 2162
Alw26I	GTCTC	5 cut(s)	114, 622, 795, 852, 1130
AlwI	GGATC	3 cut(s)	666, 886, 1539
AlwNI	CAGNNNCTG	2 cut(s)	1139, 2189
Ama87I	CYCGRG	1 cut(s)	849
AoxI	GGCC	5 cut(s)	1461, 1809, 2048, 2052, 2207
ApeKI	GCWGC	9 cut(s)	181, 449, 485, 1580, 1885, 2096, 2117, 2120, 2180
ApoI	RAATTY	5 cut(s)	318, 683, 740, 1043, 1116
Asp700I	GAANNNNTTC	2 cut(s)	240, 1119
AspA2I	CCTAGG	1 cut(s)	2150
AspLEI	GCGC	2 cut(s)	522, 2220
AspS9I	GGNCC	1 cut(s)	2307
AsuC2I	CCSGG	1 cut(s)	2177
AsuHPI	GGTGA	2 cut(s)	1124, 1447
AsuII	TTCGAA	1 cut(s)	58
AsuNHI	GCTAGC	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	849
AvaII	GGWCC	1 cut(s)	2307
AvrII	CCTAGG	1 cut(s)	2150
BarI	GAAGNNNNNNTAC	2 cut(s)	742, 774
BbrPI	CACGTG	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	2275
BbvI	GCAGC	9 cut(s)	193, 436, 472, 1567, 1872, 2083, 2104, 2107, 2167
BccI	CCATC	7 cut(s)	283, 289, 348, 526, 675, 1013, 1418
BceAI	ACGGC	3 cut(s)	21, 923, 1448
BcgI	CGANNNNNNTGC	2 cut(s)	830, 864
BciT130I	CCWGG	6 cut(s)	647, 674, 1069, 1727, 1813, 2136
BclI	TGATCA	2 cut(s)	472, 1030
BcnI	CCSGG	1 cut(s)	2177
BcoDI	GTCTC	5 cut(s)	114, 622, 795, 852, 1130
BfaI	CTAG	7 cut(s)	171, 336, 1104, 1170, 1694, 2046, 2151
BfmI	CTRYAG	3 cut(s)	1140, 2079, 2181
BfoI	RGCGCY	1 cut(s)	2221
BfrI	CTTAAG	1 cut(s)	403
BfuAI	ACCTGC	1 cut(s)	832
BglI	GCCNNNNNGGC	1 cut(s)	2177
BglII	AGATCT	2 cut(s)	593, 1859
BlnI	CCTAGG	1 cut(s)	2150
BlpI	GCTNAGC	1 cut(s)	1649
Bme1390I	CCNGG	7 cut(s)	647, 674, 1069, 1727, 1813, 2136, 2177
Bme18I	GGWCC	1 cut(s)	2307
BmeT110I	CYCGRG	1 cut(s)	849
BmgT120I	GGNCC	1 cut(s)	2307
BmiI	GGNNCC	1 cut(s)	1331
BmrFI	CCNGG	7 cut(s)	647, 674, 1069, 1727, 1813, 2136, 2177
BmsI	GCATC	5 cut(s)	440, 925, 1109, 1750, 2164
BmtI	GCTAGC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	2275
BpmI	CTGGAG	3 cut(s)	695, 821, 1841
Bpu10I	CCTNAGC	1 cut(s)	1991
Bpu1102I	GCTNAGC	1 cut(s)	1649
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	652
BpuMI	CCSGG	1 cut(s)	2177
BsaAI	YACGTR	1 cut(s)	482
BsaI	GGTCTC	2 cut(s)	114, 622
BsaJI	CCNNGG	4 cut(s)	645, 1068, 2150, 2175
BsaXI	ACNNNNNCTCC	4 cut(s)	1314, 1344, 1359, 1389
Bsc4I	CCNNNNNNNGG	5 cut(s)	673, 979, 1732, 1929, 2282
Bse118I	RCCGGY	1 cut(s)	2050
Bse1I	ACTGG	3 cut(s)	618, 1824, 2069
Bse3DI	GCAATG	1 cut(s)	1839
BseBI	CCWGG	6 cut(s)	647, 674, 1069, 1727, 1813, 2136
BseDI	CCNNGG	4 cut(s)	645, 1068, 2150, 2175
BseGI	GGATG	7 cut(s)	537, 894, 940, 1429, 1707, 1972, 2312
BseLI	CCNNNNNNNGG	5 cut(s)	673, 979, 1732, 1929, 2282
BseMI	GCAATG	1 cut(s)	1839
BseMII	CTCAG	3 cut(s)	135, 1041, 1640
BseNI	ACTGG	3 cut(s)	618, 1824, 2069
BseRI	GAGGAG	6 cut(s)	591, 1077, 1261, 1557, 1948, 2276
BseXI	GCAGC	9 cut(s)	193, 436, 472, 1567, 1872, 2083, 2104, 2107, 2167
BseYI	CCCAGC	1 cut(s)	2221
BsgI	GTGCAG	3 cut(s)	123, 435, 2106
Bsh1236I	CGCG	1 cut(s)	2323
BshFI	GGCC	5 cut(s)	1463, 1811, 2050, 2054, 2209
BsiHKCI	CYCGRG	1 cut(s)	849
BsiSI	CCGG	2 cut(s)	2051, 2177
BslI	CCNNNNNNNGG	5 cut(s)	673, 979, 1732, 1929, 2282
BsmAI	GTCTC	5 cut(s)	114, 622, 795, 852, 1130
BsnI	GGCC	5 cut(s)	1463, 1811, 2050, 2054, 2209
Bso31I	GGTCTC	2 cut(s)	114, 622
BsoBI	CYCGRG	1 cut(s)	849
Bsp119I	TTCGAA	1 cut(s)	58
Bsp1720I	GCTNAGC	1 cut(s)	1649
BspACI	CCGC	7 cut(s)	226, 1699, 1768, 1906, 2172, 2288, 2321
BspANI	GGCC	5 cut(s)	1463, 1811, 2050, 2054, 2209
BspCNI	CTCAG	3 cut(s)	136, 1042, 1641
BspFNI	CGCG	1 cut(s)	2323
BspHI	TCATGA	2 cut(s)	1618, 1663
BspLI	GGNNCC	1 cut(s)	1331
BspMAI	CTGCAG	1 cut(s)	2185
BspMI	ACCTGC	1 cut(s)	832
BspOI	GCTAGC	1 cut(s)	339
BspPI	GGATC	3 cut(s)	666, 886, 1539
BspQI	GCTCTTC	1 cut(s)	606
BspT104I	TTCGAA	1 cut(s)	58
BspTI	CTTAAG	1 cut(s)	403
BspTNI	GGTCTC	2 cut(s)	114, 622
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	1839
BsrFI	RCCGGY	1 cut(s)	2050
BsrI	ACTGG	3 cut(s)	618, 1824, 2069
BssAI	RCCGGY	1 cut(s)	2050
BssECI	CCNNGG	4 cut(s)	645, 1068, 2150, 2175
BssT1I	CCWWGG	1 cut(s)	2150
Bst2UI	CCWGG	6 cut(s)	647, 674, 1069, 1727, 1813, 2136
Bst4CI	ACNGT	5 cut(s)	159, 210, 723, 789, 1141
Bst6I	CTCTTC	8 cut(s)	606, 668, 1233, 1269, 1551, 1860, 1890, 2024
BstAFI	CTTAAG	1 cut(s)	403
BstBAI	YACGTR	1 cut(s)	482
BstBI	TTCGAA	1 cut(s)	58
BstDEI	CTNAG	4 cut(s)	144, 1050, 1649, 1991
BstEII	GGTNACC	1 cut(s)	1435
BstF5I	GGATG	7 cut(s)	537, 894, 940, 1429, 1707, 1972, 2312
BstFNI	CGCG	1 cut(s)	2323
BstH2I	RGCGCY	1 cut(s)	2221
BstHHI	GCGC	2 cut(s)	522, 2220
BstMAI	GTCTC	5 cut(s)	114, 622, 795, 852, 1130
BstNI	CCWGG	6 cut(s)	647, 674, 1069, 1727, 1813, 2136
BstNSI	RCATGY	1 cut(s)	1754
BstPI	GGTNACC	1 cut(s)	1435
BstSCI	CCNGG	7 cut(s)	645, 672, 1067, 1725, 1811, 2134, 2175
BstSFI	CTRYAG	3 cut(s)	1140, 2079, 2181
BstUI	CGCG	1 cut(s)	2323
BstV1I	GCAGC	9 cut(s)	193, 436, 472, 1567, 1872, 2083, 2104, 2107, 2167
BstV2I	GAAGAC	1 cut(s)	2275
BstX2I	RGATCY	3 cut(s)	593, 658, 1859
BstXI	CCANNNNNNTGG	3 cut(s)	1075, 1528, 1819
BstYI	RGATCY	3 cut(s)	593, 658, 1859
BsuRI	GGCC	5 cut(s)	1463, 1811, 2050, 2054, 2209
BtsCI	GGATG	7 cut(s)	537, 894, 940, 1429, 1707, 1972, 2312
BtsI	GCAGTG	2 cut(s)	2112, 2263
BtsIMutI	CAGTG	3 cut(s)	719, 2112, 2263
BveI	ACCTGC	1 cut(s)	832
CaiI	CAGNNNCTG	2 cut(s)	1139, 2189
CciI	TCATGA	2 cut(s)	1618, 1663
CfoI	GCGC	2 cut(s)	522, 2220
Cfr10I	RCCGGY	1 cut(s)	2050
Cfr13I	GGNCC	1 cut(s)	2307
CseI	GACGC	1 cut(s)	1649
Csp6I	GTAC	1 cut(s)	822
CviQI	GTAC	1 cut(s)	822
DdeI	CTNAG	4 cut(s)	144, 1050, 1649, 1991
DraI	TTTAAA	1 cut(s)	1059
EaeI	YGGCCR	2 cut(s)	1461, 2052
Eam1104I	CTCTTC	8 cut(s)	606, 668, 1233, 1269, 1551, 1860, 1890, 2024
EarI	CTCTTC	8 cut(s)	606, 668, 1233, 1269, 1551, 1860, 1890, 2024
EciI	GGCGGA	1 cut(s)	1783
Eco130I	CCWWGG	1 cut(s)	2150
Eco147I	AGGCCT	1 cut(s)	2209
Eco31I	GGTCTC	2 cut(s)	114, 622
Eco47I	GGWCC	1 cut(s)	2307
Eco57I	CTGAAG	8 cut(s)	206, 365, 744, 798, 1274, 1293, 1355, 1884
Eco72I	CACGTG	1 cut(s)	482
Eco88I	CYCGRG	1 cut(s)	849
Eco91I	GGTNACC	1 cut(s)	1435
EcoO65I	GGTNACC	1 cut(s)	1435
EcoRII	CCWGG	6 cut(s)	645, 672, 1067, 1725, 1811, 2134
EcoT14I	CCWWGG	1 cut(s)	2150
EcoT22I	ATGCAT	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	2150
FalI	AAGNNNNNCTT	4 cut(s)	647, 679, 1706, 1738
FauI	CCCGC	2 cut(s)	1913, 2281
FauNDI	CATATG	1 cut(s)	975
FbaI	TGATCA	2 cut(s)	472, 1030
FblI	GTMKAC	2 cut(s)	969, 1080
FokI	GGATG	7 cut(s)	544, 901, 947, 1436, 1714, 1979, 2299
FseI	GGCCGGCC	1 cut(s)	2054
FspBI	CTAG	7 cut(s)	171, 336, 1104, 1170, 1694, 2046, 2151
GlaI	GCGC	2 cut(s)	521, 2219
GsaI	CCCAGC	1 cut(s)	2225
GsuI	CTGGAG	3 cut(s)	695, 821, 1841
HaeII	RGCGCY	1 cut(s)	2221
HaeIII	GGCC	5 cut(s)	1463, 1811, 2050, 2054, 2209
HapII	CCGG	2 cut(s)	2051, 2177
HgaI	GACGC	1 cut(s)	1649
HhaI	GCGC	2 cut(s)	522, 2220
Hin6I	GCGC	2 cut(s)	520, 2218
HinP1I	GCGC	2 cut(s)	520, 2218
HincII	GTYRAC	3 cut(s)	726, 970, 1214
HindII	GTYRAC	3 cut(s)	726, 970, 1214
HindIII	AAGCTT	2 cut(s)	388, 815
HinfI	GANTC	8 cut(s)	82, 1013, 1052, 1241, 1304, 1559, 1804, 2202
HpaII	CCGG	2 cut(s)	2051, 2177
HphI	GGTGA	2 cut(s)	1124, 1447
Hpy166II	GTNNAC	5 cut(s)	298, 726, 970, 1081, 1214
Hpy188I	TCNGA	9 cut(s)	99, 384, 477, 610, 888, 1018, 1309, 1572, 1864
Hpy8I	GTNNAC	5 cut(s)	298, 726, 970, 1081, 1214
HpyCH4III	ACNGT	5 cut(s)	159, 210, 723, 789, 1141
HpyCH4IV	ACGT	5 cut(s)	481, 1210, 1231, 1594, 1624
HpyF3I	CTNAG	4 cut(s)	144, 1050, 1649, 1991
HpySE526I	ACGT	5 cut(s)	481, 1210, 1231, 1594, 1624
HspAI	GCGC	2 cut(s)	520, 2218
KroI	GCCGGC	1 cut(s)	2050
KroNI	GCCGGC	1 cut(s)	2052
Ksp22I	TGATCA	2 cut(s)	472, 1030
LguI	GCTCTTC	1 cut(s)	606
LmnI	GCTCC	8 cut(s)	676, 840, 1335, 1570, 2095, 2104, 2137, 2263
Lsp1109I	GCAGC	9 cut(s)	193, 436, 472, 1567, 1872, 2083, 2104, 2107, 2167
LweI	GCATC	5 cut(s)	440, 925, 1109, 1750, 2164
MaeI	CTAG	7 cut(s)	171, 336, 1104, 1170, 1694, 2046, 2151
MaeII	ACGT	5 cut(s)	481, 1210, 1231, 1594, 1624
MaeIII	GTNAC	3 cut(s)	998, 1435, 2110
MbiI	CCGCTC	1 cut(s)	228
MflI	RGATCY	3 cut(s)	593, 658, 1859
MlyI	GAGTC	5 cut(s)	1022, 1061, 1250, 1313, 1568
Mph1103I	ATGCAT	1 cut(s)	361
MroNI	GCCGGC	1 cut(s)	2050
MroXI	GAANNNNTTC	2 cut(s)	240, 1119
MseI	TTAA	9 cut(s)	264, 345, 393, 404, 425, 552, 942, 1058, 1508
MslI	CAYNNNNRTG	4 cut(s)	354, 959, 1463, 1623
MspA1I	CMGCKG	2 cut(s)	184, 1636
MspCI	CTTAAG	1 cut(s)	403
MspI	CCGG	2 cut(s)	2051, 2177
MspR9I	CCNGG	7 cut(s)	647, 674, 1069, 1727, 1813, 2136, 2177
MvaI	CCWGG	6 cut(s)	647, 674, 1069, 1727, 1813, 2136
MvnI	CGCG	1 cut(s)	2323
NaeI	GCCGGC	1 cut(s)	2052
NciI	CCSGG	1 cut(s)	2177
NdeI	CATATG	1 cut(s)	975
NgoMIV	GCCGGC	1 cut(s)	2050
NheI	GCTAGC	1 cut(s)	335
NlaIV	GGNNCC	1 cut(s)	1331
NmeAIII	GCCGAG	1 cut(s)	1948
NmuCI	GTSAC	2 cut(s)	1435, 2110
NsiI	ATGCAT	1 cut(s)	361
NspI	RCATGY	1 cut(s)	1754
NspV	TTCGAA	1 cut(s)	58
PaeI	GCATGC	1 cut(s)	1754
PagI	TCATGA	2 cut(s)	1618, 1663
PaqCI	CACCTGC	1 cut(s)	832
PceI	AGGCCT	1 cut(s)	2209
PciSI	GCTCTTC	1 cut(s)	606
PdiI	GCCGGC	1 cut(s)	2052
PdmI	GAANNNNTTC	2 cut(s)	240, 1119
PfeI	GAWTC	3 cut(s)	82, 1804, 2202
PflFI	GACNNNGTC	1 cut(s)	2305
PflMI	CCANNNNNTGG	2 cut(s)	673, 2282
PfoI	TCCNGGA	3 cut(s)	672, 1725, 2134
PleI	GAGTC	5 cut(s)	1021, 1060, 1249, 1312, 1567
PmaCI	CACGTG	1 cut(s)	482
PmlI	CACGTG	1 cut(s)	482
PpsI	GAGTC	5 cut(s)	1021, 1060, 1249, 1312, 1567
Ppu21I	YACGTR	1 cut(s)	482
Psp1406I	AACGTT	1 cut(s)	1594
Psp6I	CCWGG	6 cut(s)	645, 672, 1067, 1725, 1811, 2134
PspCI	CACGTG	1 cut(s)	482
PspEI	GGTNACC	1 cut(s)	1435
PspFI	CCCAGC	1 cut(s)	2221
PspGI	CCWGG	6 cut(s)	645, 672, 1067, 1725, 1811, 2134
PspN4I	GGNNCC	1 cut(s)	1331
PspPI	GGNCC	1 cut(s)	2307
PstI	CTGCAG	1 cut(s)	2185
PstNI	CAGNNNCTG	2 cut(s)	1139, 2189
PsuI	RGATCY	3 cut(s)	593, 658, 1859
PsyI	GACNNNGTC	1 cut(s)	2305
PvuII	CAGCTG	2 cut(s)	184, 1636
RigI	GGCCGGCC	1 cut(s)	2054
RsaI	GTAC	1 cut(s)	823
RsaNI	GTAC	1 cut(s)	822
RseI	CAYNNNNRTG	4 cut(s)	354, 959, 1463, 1623
SalI	GTCGAC	1 cut(s)	968
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	9 cut(s)	264, 345, 393, 404, 425, 552, 942, 1058, 1508
Sau96I	GGNCC	1 cut(s)	2307
SchI	GAGTC	5 cut(s)	1022, 1061, 1250, 1313, 1568
ScrFI	CCNGG	7 cut(s)	647, 674, 1069, 1727, 1813, 2136, 2177
SfaNI	GCATC	5 cut(s)	440, 925, 1109, 1750, 2164
SfcI	CTRYAG	3 cut(s)	1140, 2079, 2181
SfuI	TTCGAA	1 cut(s)	58
SinI	GGWCC	1 cut(s)	2307
SmiMI	CAYNNNNRTG	4 cut(s)	354, 959, 1463, 1623
SmlI	CTYRAG	2 cut(s)	403, 631
SmoI	CTYRAG	2 cut(s)	403, 631
SphI	GCATGC	1 cut(s)	1754
SseBI	AGGCCT	1 cut(s)	2209
SsiI	CCGC	7 cut(s)	226, 1699, 1768, 1906, 2172, 2288, 2321
SspI	AATATT	1 cut(s)	1848
SspMI	CTAG	7 cut(s)	171, 336, 1104, 1170, 1694, 2046, 2151
StuI	AGGCCT	1 cut(s)	2209
StyD4I	CCNGG	7 cut(s)	645, 672, 1067, 1725, 1811, 2134, 2175
StyI	CCWWGG	1 cut(s)	2150
TaaI	ACNGT	5 cut(s)	159, 210, 723, 789, 1141
TaiI	ACGT	5 cut(s)	484, 1213, 1234, 1597, 1627
TaqII	GACCGA	1 cut(s)	138
TauI	GCSGC	1 cut(s)	2174
TfiI	GAWTC	3 cut(s)	82, 1804, 2202
Tru1I	TTAA	9 cut(s)	264, 345, 393, 404, 425, 552, 942, 1058, 1508
Tru9I	TTAA	9 cut(s)	264, 345, 393, 404, 425, 552, 942, 1058, 1508
TscAI	CASTG	3 cut(s)	726, 2119, 2263
TseFI	GTSAC	2 cut(s)	1435, 2110
TseI	GCWGC	9 cut(s)	181, 449, 485, 1580, 1885, 2096, 2117, 2120, 2180
Tsp45I	GTSAC	2 cut(s)	1435, 2110
TspGWI	ACGGA	2 cut(s)	58, 65
TspRI	CASTG	3 cut(s)	726, 2119, 2263
Tth111I	GACNNNGTC	1 cut(s)	2305
Van91I	CCANNNNNTGG	2 cut(s)	673, 2282
Vha464I	CTTAAG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	2307
XapI	RAATTY	5 cut(s)	318, 683, 740, 1043, 1116
XbaI	TCTAGA	1 cut(s)	1103
XceI	RCATGY	1 cut(s)	1754
XmaJI	CCTAGG	1 cut(s)	2150
XmiI	GTMKAC	2 cut(s)	969, 1080
XmnI	GAANNNNTTC	2 cut(s)	240, 1119
XspI	CTAG	7 cut(s)	171, 336, 1104, 1170, 1694, 2046, 2151
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.