Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Forward (+)

43743798 .. 43748918

Gene Structure 5121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG264500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCAGCAATGGCCTCCTCCCCCGGCCATTATCGGACTCGGAGCCTCCAACTCCACTCCCCGGGTCGGGTTCTTCCGCCACTCCAACCCCAAACTCGGCGAGCAGCTCCTCTACTTCATCCTCTCTTCCCTCCGTGGCCCAATTCAATCCGCCAAGGATTTCGATAAGGTCTGGCCAATCTTCGATTCTACGCAATCTCGCGATTTTCGTAAGGTTGTGCAAGGGATTATTAGCGAGCTCGAATCGCAAGGGGCGCTTCCCAGGAGCAATTCGAGGGTTTCATCACTTGCTACATGTTGTGGACCGAGGCGGGTGAAGTTTGCAATCATGGCGAATTTTGCGAAACCGGAAAATGCTTTGAAGCGAGCTGAAGAGTTGATCAATGTTGGGCAGAAGCAAGATGCATTGCAATCGCTTCATGATCTTATTACATCAAAGAGATATAGAGCATGGCAGAAGCCACTTGAAAAAATTATGTTTAAATATGTGGAGCTTTGTGTTGACTTGCGCAAGGGTAGATTTGCCAAGGATGGTCTGATTCAGTACCATATTATATGTCAACAAGTAAATGTCAGTTCCTTGGAAGAGGTGATCAAGCACTTCATGCATCTGTCAACTGAGAAAGCTGAGCAGGCACGTACCCAGGCTCAAGCATTAGAAGAAGCACTTGATGTTGATGACCTCGAAGCAGATAAGAGGCCTGAAGATCTAATGCTGAGTTATGTCAGTGGAGAGAAAGGAAAAGATAGGTCTGATCGTGAAGTTGTTACTCCTTGGTTCAAGTTTTTGTGGGAAACCTACAGAACAGTGCTTGAGATCTTGCGCAACAACTCAAAGTTGGAGGCCCTTTATGCGATGACGGCACATCGAGCCTTTCAGTTCTGCAAGCAATACAAACGAACTAAGGAGTTTCGAAGGTTATGTGAAATCATCAGGAATCATCTGGCTAATCTGAACAAGTATAGAGATCAAAGAGACCGACCTGACCTATCTGCACCTGAGAGCTTGCAACTGTATCTTGATACTAGATTTGAGCAGCTGAAGATAGCTACTGAACTTGAACTGTGGCAGGAAGCGTTCCGCTCTGTTGAAGATATTCATGGATTGATGTGCATGGTTAAGAAAACCCCTAAACCATCGTTGATGGTGGTTTACTATGCGAAGCTCACAGAAATTTTTTGGATTTCTGCTAGCCACCTTAATCATGCTTATGCATGGTTCAAGCTATTCTCGCTTCAGAAAAGCTTTAACAAAAACTTAAGCCAGAAGGATTTGCAGTTAATAGCATCATCTGTTGTCTTGGCTGCACTTTCAGTTCCCCCCTATGATCAGACACGTGCTGCCTCTCACTTGGAACTTGAAAATGAGAAAGAGCGCAATTTGAGGATGGCTAATCTAATTGGCTTTAATCTTGACCCCAAAATCGACAGAGGAGATGTGCTTTCAAGATCTGCTCTTCTATCAGAACTGGTCTCCAAAGGTGTCTTGAGCTGTGCAACCCAGGAAGTAAAGGATCTCTTCCATCTCCTGGAGCATGAATTTCTACCTCTCGACCTTGCTGTAAAGATACAACCACTGTTGACTAAAATCTCAAAATTTGGGGGTAAGCTGGCTTCAGCTTCTTCTGTTCCTGAAGTGCAACTGTCTCAATATGTTCCTGCACTTGAAAAGCTTGGTACTTTGAGGTTGCTCCAGCAGTCGATGAAGATTGAACATTTATCTCGGATGATCCCATTTTATGACTTTTCTGTTGTAGAGAAGATATATGTGGATGTTGTTAAACATAACTTCATAGCTATGAAAGTCGACCATATGAAGGGTGTTATGATGTTTGCAGAGTTTCGTGGTCTGTGTGCTGAAGAGGCTTATTTGCAGCAAGAGCTGGAAAAATTACATGATCTTAGGAACAAAGTCAAGTTGGAAGGGGAACATTGGGATGACCTTGTATCTAGTTCGAGTCAGAATTCTCATTTAGTATCCAAGGCTACTCGTTTGTGGGAGTCGATATTAGCCCGTAAAAGTCAACATGAAGTTCTTGCTTCGGGCCCTATCGAGGATTTAATCGCTCATCGGGAGCATAGGTACCGCATTTCTGGATCTTCTTTGCTTGCAGCTATGGATCAGAGCTCTCAGGTTCCTTATGCAGATGTCTTATCTGTCCAATCTGGTGATTTTACTCCTACACATGTAGATGATAAAGAGCAGAGTGATGGTTCATATGTCAATATTAACAGAGAAAAGATGAAGAATACTTTAGATTCATCCCATTCACAAGTAAATGATGAAACTCTTCATCGAGCAGATGAGAGAAGTGGAAGAGTCCACCCAACTGTTGACGTGGCAGAAGCGAATGGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

802

Amino Acids

91.49

Weight (kDa)

7.4

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS6_N	PF14661	37 - 123	6.4e-17	HAUS augmin-like complex subunit 6 N-terminus
eIF3a_PCI_TPR-like	PF22591	133 - 532	1e-136	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	557, 872
Acc65I	GGTACC	1 cut(s)	2130
AccB1I	GGYRCC	1 cut(s)	2130
AccB7I	CCANNNNNTGG	1 cut(s)	1576
AccBSI	CCGCTC	1 cut(s)	1131
AccI	GTMKAC	1 cut(s)	1854
AccII	CGCG	1 cut(s)	249
AciI	CCGC	5 cut(s)	124, 198, 358, 1129, 2134
AclWI	GGATC	4 cut(s)	1569, 1771, 2152, 2175
AcoI	YGGCCR	2 cut(s)	72, 221
AcsI	RAATTY	5 cut(s)	382, 1221, 1586, 1643, 2011
AcuI	CTGAAG	7 cut(s)	438, 771, 1109, 1268, 1647, 1701, 1926
AcvI	CACGTG	1 cut(s)	1385
AfaI	GTAC	4 cut(s)	593, 688, 1726, 2132
AfiI	CCNNNNNNNGG	8 cut(s)	57, 108, 113, 114, 143, 1576, 1864, 2101
AflII	CTTAAG	1 cut(s)	1306
AflIII	ACRYGT	3 cut(s)	341, 1382, 2233
AjiI	CACGTC	1 cut(s)	2386
AjnI	CCWGG	4 cut(s)	308, 690, 1548, 1575
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
Alw21I	GWGCWC	2 cut(s)	288, 2177
Alw26I	GTCTC	3 cut(s)	1017, 1525, 1698
AlwI	GGATC	4 cut(s)	1569, 1771, 2152, 2175
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	8 cut(s)	3, 59, 72, 184, 221, 746, 891, 2092
ApaI	GGGCCC	1 cut(s)	2096
ApeKI	GCWGC	7 cut(s)	151, 1084, 1352, 1388, 1921, 2159, 2403
ApoI	RAATTY	5 cut(s)	382, 1221, 1586, 1643, 2011
Asp700I	GAANNNNTTC	2 cut(s)	1143, 2337
Asp718I	GGTACC	1 cut(s)	2130
AspLEI	GCGC	4 cut(s)	304, 558, 873, 1425
AspS9I	GGNCC	5 cut(s)	185, 350, 892, 2092, 2093
AsuC2I	CCSGG	3 cut(s)	71, 109, 110
AsuHPI	GGTGA	3 cut(s)	373, 649, 2228
AsuII	TTCGAA	1 cut(s)	961
AsuNHI	GCTAGC	1 cut(s)	1238
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	2096
BalI	TGGCCA	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	2130
BanII	GRGCYC	3 cut(s)	288, 2096, 2177
BarI	GAAGNNNNNNTAC	2 cut(s)	1645, 1677
BbrPI	CACGTG	1 cut(s)	1385
Bbv12I	GWGCWC	2 cut(s)	288, 2177
BbvI	GCAGC	6 cut(s)	163, 1096, 1339, 1375, 1933, 2171
BccI	CCATC	6 cut(s)	572, 1186, 1192, 1429, 1578, 2252
BceAI	ACGGC	2 cut(s)	52, 924
BcgI	CGANNNNNNTGC	2 cut(s)	441, 475
BciT130I	CCWGG	4 cut(s)	310, 692, 1550, 1577
BciVI	GTATCC	1 cut(s)	2035
BclI	TGATCA	3 cut(s)	426, 639, 1375
BcnI	CCSGG	3 cut(s)	71, 109, 110
BcoDI	GTCTC	3 cut(s)	1017, 1525, 1698
BfaI	CTAG	3 cut(s)	1074, 1239, 1998
BfmI	CTRYAG	1 cut(s)	847
BfoI	RGCGCY	1 cut(s)	305
BfrI	CTTAAG	1 cut(s)	1306
BfuI	GTATCC	1 cut(s)	2035
BglII	AGATCT	3 cut(s)	754, 864, 1496
BisI	GCNGC	7 cut(s)	152, 1085, 1353, 1389, 1922, 2160, 2404
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	7 cut(s)	153, 1086, 1354, 1390, 1923, 2161, 2405
Bme1390I	CCNGG	7 cut(s)	71, 109, 110, 310, 692, 1550, 1577
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	108
BmgBI	CACGTC	1 cut(s)	2386
BmgT120I	GGNCC	5 cut(s)	185, 350, 892, 2092, 2093
BmiI	GGNNCC	4 cut(s)	91, 2094, 2132, 2184
BmrFI	CCNGG	7 cut(s)	71, 109, 110, 310, 692, 1550, 1577
BmsI	GCATC	3 cut(s)	439, 664, 1343
BmtI	GCTAGC	1 cut(s)	1242
BpmI	CTGGAG	2 cut(s)	1598, 1724
Bpu1102I	GCTNAGC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	961
BpuEI	CTTGAG	3 cut(s)	681, 881, 1555
BpuMI	CCSGG	3 cut(s)	71, 109, 110
BsaAI	YACGTR	2 cut(s)	686, 1385
BsaI	GGTCTC	2 cut(s)	1017, 1525
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	2114, 2144
Bsc4I	CCNNNNNNNGG	8 cut(s)	57, 108, 113, 114, 143, 1576, 1864, 2101
Bse1I	ACTGG	1 cut(s)	1521
Bse3DI	GCAATG	2 cut(s)	62, 452
BseBI	CCWGG	4 cut(s)	310, 692, 1550, 1577
BseGI	GGATG	7 cut(s)	165, 583, 1440, 1779, 1825, 1990, 2309
BseLI	CCNNNNNNNGG	8 cut(s)	57, 108, 113, 114, 143, 1576, 1864, 2101
BseMI	GCAATG	2 cut(s)	62, 452
BseMII	CTCAG	5 cut(s)	657, 666, 755, 1038, 2192
BseNI	ACTGG	1 cut(s)	1521
BseRI	GAGGAG	3 cut(s)	54, 146, 1494
BseSI	GKGCMC	1 cut(s)	2096
BseXI	GCAGC	6 cut(s)	163, 1096, 1339, 1375, 1933, 2171
BseYI	CCCAGC	1 cut(s)	51
BsgI	GTGCAG	3 cut(s)	1026, 1338, 1692
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	8 cut(s)	5, 61, 74, 186, 223, 748, 893, 2094
BshNI	GGYRCC	1 cut(s)	2130
BsiHKAI	GWGCWC	2 cut(s)	288, 2177
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	71, 109, 395
BslI	CCNNNNNNNGG	8 cut(s)	57, 108, 113, 114, 143, 1576, 1864, 2101
BsmAI	GTCTC	3 cut(s)	1017, 1525, 1698
BsnI	GGCC	8 cut(s)	5, 61, 74, 186, 223, 748, 893, 2094
Bso31I	GGTCTC	2 cut(s)	1017, 1525
BsoBI	CYCGRG	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	961
Bsp120I	GGGCCC	1 cut(s)	2092
Bsp1286I	GDGCHC	3 cut(s)	288, 2096, 2177
Bsp1720I	GCTNAGC	1 cut(s)	675
Bsp68I	TCGCGA	1 cut(s)	249
BspACI	CCGC	5 cut(s)	124, 198, 358, 1129, 2134
BspANI	GGCC	8 cut(s)	5, 61, 74, 186, 223, 748, 893, 2094
BspCNI	CTCAG	5 cut(s)	658, 667, 756, 1039, 2191
BspFNI	CGCG	1 cut(s)	249
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	4 cut(s)	91, 2094, 2132, 2184
BspOI	GCTAGC	1 cut(s)	1242
BspPI	GGATC	4 cut(s)	1569, 1771, 2152, 2175
BspQI	GCTCTTC	1 cut(s)	1509
BspT104I	TTCGAA	1 cut(s)	961
BspT107I	GGYRCC	1 cut(s)	2130
BspTI	CTTAAG	1 cut(s)	1306
BspTNI	GGTCTC	2 cut(s)	1017, 1525
BsrBI	CCGCTC	1 cut(s)	1131
BsrDI	GCAATG	2 cut(s)	62, 452
BsrI	ACTGG	1 cut(s)	1521
BssT1I	CCWWGG	5 cut(s)	201, 573, 627, 821, 2028
Bst2UI	CCWGG	4 cut(s)	310, 692, 1550, 1577
Bst4CI	ACNGT	6 cut(s)	856, 1062, 1113, 1626, 1692, 2380
Bst6I	CTCTTC	8 cut(s)	178, 414, 627, 1509, 1571, 1902, 2343, 2359
BstAFI	CTTAAG	1 cut(s)	1306
BstAPI	GCANNNNNTGC	1 cut(s)	652
BstBAI	YACGTR	2 cut(s)	686, 1385
BstBI	TTCGAA	1 cut(s)	961
BstC8I	GCNNGC	9 cut(s)	149, 284, 414, 681, 935, 1055, 1240, 1659, 2157
BstDEI	CTNAG	7 cut(s)	666, 675, 764, 951, 1047, 1949, 2178
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	7 cut(s)	165, 583, 1440, 1779, 1825, 1990, 2309
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	4 cut(s)	304, 558, 873, 1425
BstMAI	GTCTC	3 cut(s)	1017, 1525, 1698
BstNI	CCWGG	4 cut(s)	310, 692, 1550, 1577
BstNSI	RCATGY	2 cut(s)	345, 2237
BstSCI	CCNGG	7 cut(s)	69, 107, 108, 308, 690, 1548, 1575
BstSFI	CTRYAG	1 cut(s)	847
BstSLI	GKGCMC	1 cut(s)	2096
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	6 cut(s)	163, 1096, 1339, 1375, 1933, 2171
BstX2I	RGATCY	5 cut(s)	754, 864, 1496, 1561, 2144
BstYI	RGATCY	5 cut(s)	754, 864, 1496, 1561, 2144
BsuI	GTATCC	1 cut(s)	2035
BsuRI	GGCC	8 cut(s)	5, 61, 74, 186, 223, 748, 893, 2094
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	917
BtrI	CACGTC	1 cut(s)	2386
BtsCI	GGATG	7 cut(s)	165, 583, 1440, 1779, 1825, 1990, 2309
BtsIMutI	CAGTG	3 cut(s)	781, 861, 1622
BtuMI	TCGCGA	1 cut(s)	249
Cac8I	GCNNGC	9 cut(s)	149, 284, 414, 681, 935, 1055, 1240, 1659, 2157
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	4 cut(s)	304, 558, 873, 1425
Cfr13I	GGNCC	5 cut(s)	185, 350, 892, 2092, 2093
Cfr9I	CCCGGG	1 cut(s)	108
Csp6I	GTAC	4 cut(s)	592, 687, 1725, 2131
CviQI	GTAC	4 cut(s)	592, 687, 1725, 2131
DdeI	CTNAG	7 cut(s)	666, 675, 764, 951, 1047, 1949, 2178
DraI	TTTAAA	1 cut(s)	529
EaeI	YGGCCR	2 cut(s)	72, 221
Eam1104I	CTCTTC	8 cut(s)	178, 414, 627, 1509, 1571, 1902, 2343, 2359
EarI	CTCTTC	8 cut(s)	178, 414, 627, 1509, 1571, 1902, 2343, 2359
EciI	GGCGGA	2 cut(s)	113, 187
Ecl136II	GAGCTC	2 cut(s)	286, 2175
Eco130I	CCWWGG	5 cut(s)	201, 573, 627, 821, 2028
Eco147I	AGGCCT	1 cut(s)	748
Eco24I	GRGCYC	3 cut(s)	288, 2096, 2177
Eco31I	GGTCTC	2 cut(s)	1017, 1525
Eco47I	GGWCC	1 cut(s)	350
Eco53kI	GAGCTC	2 cut(s)	286, 2175
Eco57I	CTGAAG	7 cut(s)	438, 771, 1109, 1268, 1647, 1701, 1926
Eco72I	CACGTG	1 cut(s)	1385
Eco88I	CYCGRG	1 cut(s)	108
EcoICRI	GAGCTC	2 cut(s)	286, 2175
EcoO109I	RGGNCCY	2 cut(s)	892, 2093
EcoRI	GAATTC	1 cut(s)	2011
EcoRII	CCWGG	4 cut(s)	308, 690, 1548, 1575
EcoT14I	CCWWGG	5 cut(s)	201, 573, 627, 821, 2028
EcoT22I	ATGCAT	3 cut(s)	454, 657, 1264
EcoT38I	GRGCYC	3 cut(s)	288, 2096, 2177
ErhI	CCWWGG	5 cut(s)	201, 573, 627, 821, 2028
FalI	AAGNNNNNCTT	6 cut(s)	288, 320, 699, 731, 1550, 1582
FauI	CCCGC	1 cut(s)	351
FauNDI	CATATG	2 cut(s)	1860, 2266
FbaI	TGATCA	3 cut(s)	426, 639, 1375
FblI	GTMKAC	1 cut(s)	1854
Fnu4HI	GCNGC	7 cut(s)	152, 1085, 1353, 1389, 1922, 2160, 2404
FokI	GGATG	7 cut(s)	152, 590, 1447, 1786, 1832, 1997, 2296
FriOI	GRGCYC	3 cut(s)	288, 2096, 2177
Fsp4HI	GCNGC	7 cut(s)	152, 1085, 1353, 1389, 1922, 2160, 2404
FspBI	CTAG	3 cut(s)	1074, 1239, 1998
FspI	TGCGCA	2 cut(s)	557, 872
GlaI	GCGC	4 cut(s)	303, 557, 872, 1424
GluI	GCNGC	7 cut(s)	152, 1085, 1353, 1389, 1922, 2160, 2404
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	2 cut(s)	1598, 1724
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	8 cut(s)	5, 61, 74, 186, 223, 748, 893, 2094
HapII	CCGG	3 cut(s)	71, 109, 395
HhaI	GCGC	4 cut(s)	304, 558, 873, 1425
Hin6I	GCGC	4 cut(s)	302, 556, 871, 1423
HinP1I	GCGC	4 cut(s)	302, 556, 871, 1423
HincII	GTYRAC	7 cut(s)	550, 608, 663, 1629, 1855, 2072, 2383
HindII	GTYRAC	7 cut(s)	550, 608, 663, 1629, 1855, 2072, 2383
HindIII	AAGCTT	2 cut(s)	1291, 1718
HpaII	CCGG	3 cut(s)	71, 109, 395
HphI	GGTGA	3 cut(s)	373, 649, 2228
HpyAV	CCTTC	4 cut(s)	957, 1309, 1858, 1964
HpyCH4III	ACNGT	6 cut(s)	856, 1062, 1113, 1626, 1692, 2380
HpyCH4IV	ACGT	3 cut(s)	685, 1384, 2385
HpyF3I	CTNAG	7 cut(s)	666, 675, 764, 951, 1047, 1949, 2178
HpySE526I	ACGT	3 cut(s)	685, 1384, 2385
HspAI	GCGC	4 cut(s)	302, 556, 871, 1423
KpnI	GGTACC	1 cut(s)	2134
Ksp22I	TGATCA	3 cut(s)	426, 639, 1375
LguI	GCTCTTC	1 cut(s)	1509
LmnI	GCTCC	7 cut(s)	89, 159, 312, 538, 1579, 1743, 2122
Lsp1109I	GCAGC	6 cut(s)	163, 1096, 1339, 1375, 1933, 2171
LweI	GCATC	3 cut(s)	439, 664, 1343
MaeI	CTAG	3 cut(s)	1074, 1239, 1998
MaeII	ACGT	3 cut(s)	685, 1384, 2385
MaeIII	GTNAC	1 cut(s)	814
MbiI	CCGCTC	1 cut(s)	1131
MflI	RGATCY	5 cut(s)	754, 864, 1496, 1561, 2144
MhlI	GDGCHC	3 cut(s)	288, 2096, 2177
MlsI	TGGCCA	1 cut(s)	223
MluNI	TGGCCA	1 cut(s)	223
MlyI	GAGTC	4 cut(s)	78, 2014, 2057, 2376
MmeI	TCCRAC	5 cut(s)	69, 120, 156, 867, 1947
Mox20I	TGGCCA	1 cut(s)	223
Mph1103I	ATGCAT	3 cut(s)	454, 657, 1264
MroXI	GAANNNNTTC	2 cut(s)	1143, 2337
MscI	TGGCCA	1 cut(s)	223
MslI	CAYNNNNRTG	4 cut(s)	1257, 1844, 1983, 2238
Msp20I	TGGCCA	1 cut(s)	223
MspA1I	CMGCKG	2 cut(s)	1087, 2406
MspCI	CTTAAG	1 cut(s)	1306
MspI	CCGG	3 cut(s)	71, 109, 395
MspR9I	CCNGG	7 cut(s)	71, 109, 110, 310, 692, 1550, 1577
MvaI	CCWGG	4 cut(s)	310, 692, 1550, 1577
MvnI	CGCG	1 cut(s)	249
NciI	CCSGG	3 cut(s)	71, 109, 110
NdeI	CATATG	2 cut(s)	1860, 2266
NheI	GCTAGC	1 cut(s)	1238
NlaIV	GGNNCC	4 cut(s)	91, 2094, 2132, 2184
NmeAIII	GCCGAG	1 cut(s)	123
NruI	TCGCGA	1 cut(s)	249
NsbI	TGCGCA	2 cut(s)	557, 872
NsiI	ATGCAT	3 cut(s)	454, 657, 1264
NspI	RCATGY	2 cut(s)	345, 2237
NspV	TTCGAA	1 cut(s)	961
PagI	TCATGA	1 cut(s)	466
PceI	AGGCCT	1 cut(s)	748
PciI	ACATGT	2 cut(s)	341, 2233
PciSI	GCTCTTC	1 cut(s)	1509
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PdmI	GAANNNNTTC	2 cut(s)	1143, 2337
PfeI	GAWTC	6 cut(s)	41, 233, 290, 586, 985, 2306
PflMI	CCANNNNNTGG	1 cut(s)	1576
PfoI	TCCNGGA	1 cut(s)	1575
PkrI	GCNGC	7 cut(s)	153, 1086, 1354, 1390, 1923, 2161, 2405
PleI	GAGTC	4 cut(s)	78, 2013, 2056, 2375
PmaCI	CACGTG	1 cut(s)	1385
PmlI	CACGTG	1 cut(s)	1385
PpsI	GAGTC	4 cut(s)	78, 2013, 2056, 2375
Ppu21I	YACGTR	2 cut(s)	686, 1385
PscI	ACATGT	2 cut(s)	341, 2233
Psp124BI	GAGCTC	2 cut(s)	288, 2177
Psp6I	CCWGG	4 cut(s)	308, 690, 1548, 1575
PspCI	CACGTG	1 cut(s)	1385
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	4 cut(s)	308, 690, 1548, 1575
PspN4I	GGNNCC	4 cut(s)	91, 2094, 2132, 2184
PspOMI	GGGCCC	1 cut(s)	2092
PspPI	GGNCC	5 cut(s)	185, 350, 892, 2092, 2093
PsuI	RGATCY	5 cut(s)	754, 864, 1496, 1561, 2144
PvuII	CAGCTG	2 cut(s)	1087, 2406
RruI	TCGCGA	1 cut(s)	249
RsaI	GTAC	4 cut(s)	593, 688, 1726, 2132
RsaNI	GTAC	4 cut(s)	592, 687, 1725, 2131
RseI	CAYNNNNRTG	4 cut(s)	1257, 1844, 1983, 2238
SacI	GAGCTC	2 cut(s)	288, 2177
SalI	GTCGAC	1 cut(s)	1853
SapI	GCTCTTC	1 cut(s)	1509
SatI	GCNGC	7 cut(s)	152, 1085, 1353, 1389, 1922, 2160, 2404
Sau96I	GGNCC	5 cut(s)	185, 350, 892, 2092, 2093
SchI	GAGTC	4 cut(s)	78, 2014, 2057, 2376
ScrFI	CCNGG	7 cut(s)	71, 109, 110, 310, 692, 1550, 1577
SduI	GDGCHC	3 cut(s)	288, 2096, 2177
SfaNI	GCATC	3 cut(s)	439, 664, 1343
SfcI	CTRYAG	1 cut(s)	847
SfuI	TTCGAA	1 cut(s)	961
SinI	GGWCC	1 cut(s)	350
SmaI	CCCGGG	1 cut(s)	110
SmiMI	CAYNNNNRTG	4 cut(s)	1257, 1844, 1983, 2238
SmlI	CTYRAG	4 cut(s)	696, 860, 1306, 1534
SmoI	CTYRAG	4 cut(s)	696, 860, 1306, 1534
SseBI	AGGCCT	1 cut(s)	748
SsiI	CCGC	5 cut(s)	124, 198, 358, 1129, 2134
SspI	AATATT	1 cut(s)	2275
SspMI	CTAG	3 cut(s)	1074, 1239, 1998
SstI	GAGCTC	2 cut(s)	288, 2177
StuI	AGGCCT	1 cut(s)	748
StyD4I	CCNGG	7 cut(s)	69, 107, 108, 308, 690, 1548, 1575
StyI	CCWWGG	5 cut(s)	201, 573, 627, 821, 2028
TaaI	ACNGT	6 cut(s)	856, 1062, 1113, 1626, 1692, 2380
TaiI	ACGT	3 cut(s)	688, 1387, 2388
TaqII	GACCGA	2 cut(s)	367, 1041
TfiI	GAWTC	6 cut(s)	41, 233, 290, 586, 985, 2306
TscAI	CASTG	3 cut(s)	781, 861, 1629
TseI	GCWGC	7 cut(s)	151, 1084, 1352, 1388, 1921, 2159, 2403
TspGWI	ACGGA	1 cut(s)	170
TspMI	CCCGGG	1 cut(s)	108
TspRI	CASTG	3 cut(s)	781, 861, 1629
Van91I	CCANNNNNTGG	1 cut(s)	1576
Vha464I	CTTAAG	1 cut(s)	1306
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	5 cut(s)	382, 1221, 1586, 1643, 2011
XceI	RCATGY	2 cut(s)	345, 2237
XmaI	CCCGGG	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	1854
XmnI	GAANNNNTTC	2 cut(s)	1143, 2337
XspI	CTAG	3 cut(s)	1074, 1239, 1998
Zsp2I	ATGCAT	3 cut(s)	454, 657, 1264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.