Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002045.1

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Forward (+)

129863 .. 132739

Gene Structure 2877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002045.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggcgaattttgcgaaaccggataatgctttgaagcgagttgaagagttgatcaattttgggcagaagcaagatgcattgcaatcgcttcatgatcttattacatcaaagagatatagagcatggcagaagccacttgaaaaaattaagttttattatgtggagctttgtgttgacttgcgcaagggtagatttggcaaggatggtcagattcagtaccgtattatatgtcaacaagtaaatgtaagttccttggaagaggtgatcaagcacttcatgcatctgtcaactgagaaagctgagcaggcacgtacccagggtcaagcattagaagaagtacttgatgttgatgacctcgaagcagataagaggcctgaagatctaatgctgacttatgtcagtggagagaaaggaaaagataggaagcatctgcgtaatctgaacaagtatagagatcaaagagaccgacctgacctatctgcacctgagagcttgcaactgtatcttcatactagatttgagcagctgaagatagctactgaacttgaactgtggcaggtgtctgaattctttttgagtatattttttcccccctatgatcagacacgtgctgcctctcacttggaacttgaaaatgagaaagagcgcaatttgaggatgcctaatcgaattggctttaatcgtgaccccaaaatcgacagaggagatgtggtctccaaaggtgtcttcagctgtgcaacccaggaagtaaaggatctcttccatctcctggagcatgaatttctacctctcgaccttgctgtaaagatacaaccactgttgacaaaaatctcaacatttgggggtaagctggcttcaccttcttctgttcctgaagtgcaactgtcacaatatgttcctgcaccaggaaagcttggtactttgaggttgctccagcaggtgtctcgggtgtacatattgcagggttattcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

324

Amino Acids

37.52

Weight (kDa)

7.71

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	547, 928
Acc16I	TGCGCA	1 cut(s)	182
Acc36I	ACCTGC	2 cut(s)	547, 928
AccB7I	CCANNNNNTGG	1 cut(s)	769
AclWI	GGATC	1 cut(s)	762
AcsI	RAATTY	3 cut(s)	7, 566, 779
AcuI	CTGAAG	4 cut(s)	396, 548, 712, 894
AcvI	CACGTG	1 cut(s)	608
AfaI	GTAC	5 cut(s)	218, 313, 339, 919, 953
AfiI	CCNNNNNNNGG	2 cut(s)	769, 905
AflIII	ACRYGT	1 cut(s)	605
AgsI	TTSAA	5 cut(s)	34, 44, 140, 548, 632
AjnI	CCWGG	4 cut(s)	315, 741, 768, 904
AjuI	GAANNNNNNNTTGG	2 cut(s)	710, 742
AluBI	AGCT	8 cut(s)	166, 299, 492, 526, 536, 732, 850, 913
AluI	AGCT	8 cut(s)	166, 299, 492, 526, 536, 732, 850, 913
Alw26I	GTCTC	3 cut(s)	456, 718, 948
AlwI	GGATC	1 cut(s)	762
Ama87I	CYCGRG	1 cut(s)	945
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	523, 611
ApoI	RAATTY	3 cut(s)	7, 566, 779
AspLEI	GCGC	2 cut(s)	183, 648
AsuHPI	GGTGA	2 cut(s)	274, 849
AvaI	CYCGRG	1 cut(s)	945
BarI	GAAGNNNNNNTAC	2 cut(s)	838, 870
BbrPI	CACGTG	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	718
BbvI	GCAGC	2 cut(s)	535, 598
BccI	CCATC	2 cut(s)	197, 771
BcgI	CGANNNNNNTGC	4 cut(s)	66, 100, 926, 960
BciT130I	CCWGG	4 cut(s)	317, 743, 770, 906
BclI	TGATCA	3 cut(s)	51, 264, 598
BcoDI	GTCTC	3 cut(s)	456, 718, 948
BfaI	CTAG	2 cut(s)	513, 973
BfuAI	ACCTGC	2 cut(s)	547, 928
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	2 cut(s)	524, 612
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	2 cut(s)	525, 613
BmcAI	AGTACT	1 cut(s)	339
Bme1390I	CCNGG	4 cut(s)	317, 743, 770, 906
BmeT110I	CYCGRG	1 cut(s)	945
BmrFI	CCNGG	4 cut(s)	317, 743, 770, 906
BmsI	GCATC	4 cut(s)	64, 289, 436, 648
BoxI	GACNNNNGTC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	718
BpmI	CTGGAG	2 cut(s)	791, 917
Bpu1102I	GCTNAGC	1 cut(s)	300
BsaAI	YACGTR	2 cut(s)	311, 608
BsaI	GGTCTC	2 cut(s)	456, 718
BsaJI	CCNNGG	4 cut(s)	252, 315, 316, 741
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	2 cut(s)	769, 905
Bse3DI	GCAATG	1 cut(s)	77
BseBI	CCWGG	4 cut(s)	317, 743, 770, 906
BseDI	CCNNGG	4 cut(s)	252, 315, 316, 741
BseGI	GGATG	2 cut(s)	208, 663
BseLI	CCNNNNNNNGG	2 cut(s)	769, 905
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	3 cut(s)	282, 291, 477
BseRI	GAGGAG	1 cut(s)	717
BseXI	GCAGC	2 cut(s)	535, 598
BsgI	GTGCAG	2 cut(s)	465, 885
BshFI	GGCC	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	945
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	769, 905
BsmAI	GTCTC	3 cut(s)	456, 718, 948
BsnI	GGCC	1 cut(s)	373
Bso31I	GGTCTC	2 cut(s)	456, 718
BsoBI	CYCGRG	1 cut(s)	945
Bsp1407I	TGTACA	1 cut(s)	951
Bsp143I	GATC	7 cut(s)	51, 94, 264, 379, 454, 598, 754
Bsp1720I	GCTNAGC	1 cut(s)	300
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	3 cut(s)	283, 292, 478
BspHI	TCATGA	1 cut(s)	91
BspMI	ACCTGC	2 cut(s)	547, 928
BspPI	GGATC	1 cut(s)	762
BspTNI	GGTCTC	2 cut(s)	456, 718
BsrDI	GCAATG	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	951
BssECI	CCNNGG	4 cut(s)	252, 315, 316, 741
BssMI	GATC	7 cut(s)	51, 94, 264, 379, 454, 598, 754
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	4 cut(s)	317, 743, 770, 906
Bst4CI	ACNGT	5 cut(s)	221, 501, 552, 819, 885
Bst6I	CTCTTC	3 cut(s)	39, 252, 764
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstAUI	TGTACA	1 cut(s)	951
BstBAI	YACGTR	2 cut(s)	311, 608
BstC8I	GCNNGC	3 cut(s)	306, 494, 852
BstDEI	CTNAG	3 cut(s)	291, 300, 486
BstENI	CCTNNNNNAGG	1 cut(s)	903
BstF5I	GGATG	2 cut(s)	208, 663
BstHHI	GCGC	2 cut(s)	183, 648
BstKTI	GATC	7 cut(s)	54, 97, 267, 382, 457, 601, 757
BstMAI	GTCTC	3 cut(s)	456, 718, 948
BstMBI	GATC	7 cut(s)	51, 94, 264, 379, 454, 598, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 277, 305
BstNI	CCWGG	4 cut(s)	317, 743, 770, 906
BstPAI	GACNNNNGTC	1 cut(s)	395
BstSCI	CCNGG	4 cut(s)	315, 741, 768, 904
BstV1I	GCAGC	2 cut(s)	535, 598
BstV2I	GAAGAC	1 cut(s)	718
BstX2I	RGATCY	2 cut(s)	379, 754
BstYI	RGATCY	2 cut(s)	379, 754
BsuRI	GGCC	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	208, 663
BtsIMutI	CAGTG	2 cut(s)	406, 815
BveI	ACCTGC	2 cut(s)	547, 928
Cac8I	GCNNGC	3 cut(s)	306, 494, 852
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	2 cut(s)	183, 648
Csp6I	GTAC	5 cut(s)	217, 312, 338, 918, 952
CviAII	CATG	4 cut(s)	92, 123, 277, 776
CviQI	GTAC	5 cut(s)	217, 312, 338, 918, 952
DdeI	CTNAG	3 cut(s)	291, 300, 486
DpnI	GATC	7 cut(s)	53, 96, 266, 381, 456, 600, 756
DpnII	GATC	7 cut(s)	51, 94, 264, 379, 454, 598, 754
Eam1104I	CTCTTC	3 cut(s)	39, 252, 764
EarI	CTCTTC	3 cut(s)	39, 252, 764
Eco130I	CCWWGG	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	373
Eco31I	GGTCTC	2 cut(s)	456, 718
Eco57I	CTGAAG	4 cut(s)	396, 548, 712, 894
Eco72I	CACGTG	1 cut(s)	608
Eco88I	CYCGRG	1 cut(s)	945
EcoNI	CCTNNNNNAGG	1 cut(s)	903
EcoRI	GAATTC	1 cut(s)	566
EcoRII	CCWGG	4 cut(s)	315, 741, 768, 904
EcoT14I	CCWWGG	1 cut(s)	252
EcoT22I	ATGCAT	2 cut(s)	79, 282
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	4 cut(s)	95, 126, 280, 779
FalI	AAGNNNNNCTT	4 cut(s)	324, 356, 743, 775
FatI	CATG	4 cut(s)	91, 122, 276, 775
FbaI	TGATCA	3 cut(s)	51, 264, 598
Fnu4HI	GCNGC	2 cut(s)	524, 612
FokI	GGATG	2 cut(s)	215, 670
Fsp4HI	GCNGC	2 cut(s)	524, 612
FspBI	CTAG	2 cut(s)	513, 973
FspI	TGCGCA	1 cut(s)	182
GlaI	GCGC	2 cut(s)	182, 647
GluI	GCNGC	2 cut(s)	524, 612
GsuI	CTGGAG	2 cut(s)	791, 917
HaeIII	GGCC	1 cut(s)	373
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	2 cut(s)	183, 648
Hin1II	CATG	4 cut(s)	95, 126, 280, 779
Hin6I	GCGC	2 cut(s)	181, 646
HinP1I	GCGC	2 cut(s)	181, 646
HincII	GTYRAC	4 cut(s)	175, 233, 288, 822
HindII	GTYRAC	4 cut(s)	175, 233, 288, 822
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	274, 849
Hpy166II	GTNNAC	5 cut(s)	175, 233, 288, 822, 952
Hpy188I	TCNGA	4 cut(s)	210, 441, 565, 603
Hpy188III	TCNNGA	4 cut(s)	92, 683, 791, 872
Hpy8I	GTNNAC	5 cut(s)	175, 233, 288, 822, 952
HpyAV	CCTTC	1 cut(s)	870
HpyCH4III	ACNGT	5 cut(s)	221, 501, 552, 819, 885
HpyCH4IV	ACGT	2 cut(s)	310, 607
HpyCH4V	TGCA	9 cut(s)	77, 82, 280, 482, 496, 737, 880, 902, 961
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 277, 305
HpyF3I	CTNAG	3 cut(s)	291, 300, 486
HpySE526I	ACGT	2 cut(s)	310, 607
Hsp92II	CATG	4 cut(s)	95, 126, 280, 779
HspAI	GCGC	2 cut(s)	181, 646
Ksp22I	TGATCA	3 cut(s)	51, 264, 598
Kzo9I	GATC	7 cut(s)	51, 94, 264, 379, 454, 598, 754
LmnI	GCTCC	3 cut(s)	163, 772, 936
Lsp1109I	GCAGC	2 cut(s)	535, 598
LweI	GCATC	4 cut(s)	64, 289, 436, 648
MaeI	CTAG	2 cut(s)	513, 973
MaeII	ACGT	2 cut(s)	310, 607
MaeIII	GTNAC	2 cut(s)	683, 885
MalI	GATC	7 cut(s)	53, 96, 266, 381, 456, 600, 756
MboI	GATC	7 cut(s)	51, 94, 264, 379, 454, 598, 754
MboII	GAAGA	9 cut(s)	56, 269, 344, 389, 497, 541, 718, 751, 855
MflI	RGATCY	2 cut(s)	379, 754
MluCI	AATT	7 cut(s)	7, 55, 144, 566, 649, 669, 779
MnlI	CCTC	8 cut(s)	253, 363, 365, 625, 648, 695, 798, 918
Mph1103I	ATGCAT	2 cut(s)	79, 282
MseI	TTAA	2 cut(s)	147, 678
MspA1I	CMGCKG	2 cut(s)	526, 732
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	4 cut(s)	317, 743, 770, 906
MvaI	CCWGG	4 cut(s)	317, 743, 770, 906
MwoI	GCNNNNNNNGC	3 cut(s)	11, 277, 305
NdeII	GATC	7 cut(s)	51, 94, 264, 379, 454, 598, 754
NlaIII	CATG	4 cut(s)	95, 126, 280, 779
NmuCI	GTSAC	2 cut(s)	683, 885
NsbI	TGCGCA	1 cut(s)	182
NsiI	ATGCAT	2 cut(s)	79, 282
PagI	TCATGA	1 cut(s)	91
PaqCI	CACCTGC	2 cut(s)	547, 928
PasI	CCCWGGG	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	211
PflMI	CCANNNNNTGG	1 cut(s)	769
PfoI	TCCNGGA	1 cut(s)	768
PkrI	GCNGC	2 cut(s)	525, 613
PmaCI	CACGTG	1 cut(s)	608
PmlI	CACGTG	1 cut(s)	608
Ppu21I	YACGTR	2 cut(s)	311, 608
PshAI	GACNNNNGTC	1 cut(s)	395
Psp6I	CCWGG	4 cut(s)	315, 741, 768, 904
PspCI	CACGTG	1 cut(s)	608
PspGI	CCWGG	4 cut(s)	315, 741, 768, 904
PsuI	RGATCY	2 cut(s)	379, 754
PvuII	CAGCTG	2 cut(s)	526, 732
RsaI	GTAC	5 cut(s)	218, 313, 339, 919, 953
RsaNI	GTAC	5 cut(s)	217, 312, 338, 918, 952
SaqAI	TTAA	2 cut(s)	147, 678
SatI	GCNGC	2 cut(s)	524, 612
Sau3AI	GATC	7 cut(s)	51, 94, 264, 379, 454, 598, 754
ScaI	AGTACT	1 cut(s)	339
ScrFI	CCNGG	4 cut(s)	317, 743, 770, 906
SfaNI	GCATC	4 cut(s)	64, 289, 436, 648
Sse9I	AATT	7 cut(s)	7, 55, 144, 566, 649, 669, 779
SseBI	AGGCCT	1 cut(s)	373
SspMI	CTAG	2 cut(s)	513, 973
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	4 cut(s)	315, 741, 768, 904
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	5 cut(s)	221, 501, 552, 819, 885
TaiI	ACGT	2 cut(s)	313, 610
TaqI	TCGA	4 cut(s)	357, 667, 696, 792
TaqII	GACCGA	1 cut(s)	480
TasI	AATT	7 cut(s)	7, 55, 144, 566, 649, 669, 779
TatI	WGTACW	2 cut(s)	337, 951
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	147, 678
Tru9I	TTAA	2 cut(s)	147, 678
TscAI	CASTG	2 cut(s)	406, 822
TseFI	GTSAC	2 cut(s)	683, 885
TseI	GCWGC	2 cut(s)	523, 611
Tsp45I	GTSAC	2 cut(s)	683, 885
TspDTI	ATGAA	4 cut(s)	80, 265, 497, 792
TspRI	CASTG	2 cut(s)	406, 822
Van91I	CCANNNNNTGG	1 cut(s)	769
XagI	CCTNNNNNAGG	1 cut(s)	903
XapI	RAATTY	3 cut(s)	7, 566, 779
XspI	CTAG	2 cut(s)	513, 973
ZrmI	AGTACT	1 cut(s)	339
Zsp2I	ATGCAT	2 cut(s)	79, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.