Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Reverse (-)

79808214 .. 79811890

Gene Structure 3677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG565100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCAGAGATTCATTCCATCAGAATTCGGGTTGGACCCAGATAAGATGCAAATTTCAGGGATGGACTACAACTTCTATTCAAACAAAGCCGAGATTAGGCGTCTTGTGGAAGCTCAAGGCATTCCCTACACTTTTATTTCCTGCAATTTCTATACGAGCTATTTGCTTCCTTCACTTGTGCAGCCGGGCCTCAAAGCGCCTCCAAGGGACAAAGTCACGATTTTCGGGGACGGAAATACTAAAGGCGTTTTTGTCAAGGAAATTGATGTAGCTGCCTTCACTATCAGGACATTGGACGATCCACGAACCTTGAACAAAGTGTTGTATTTTAGTTCTACTGCTATTGAGAGGATTTGCATGGCTTGTTCACGGGCTCTAATGACAGCACATCGAGCCTTTCAGTTCTGCAAGCAATACAAACGAACTACGGAGTTTCGAAGGTTATGTGAAATCATCAGGAATCATCTGGCTAATCTGAACAAGTATAGAGATCAAAGAGACCGACCTGACCTATCTGCACCTGAGAGCTTGCAACTGTATCTTGATACTAGATTTGAGCAGCTGAAGATAGCTACTGAACTTGAACTGTGGCAGGAAGCGTTCCGCTCTATTGAAGATATTCATGGATTGATGTGCATGGTTAAGAAAACCCCTAAACCATCGTTGATGACACGTGCTGCCTCTCACTTGGAACTTGAAAATGAGAAAGAGCGCAATTTGAGGATGGCTAATCTAATTGGCTTTAATCTTGACCCCAAAATCGACAGAGGAGATGTGCTTTCAAGATCTGCTCTTCTATCAGAACTGATTCATCCCATTCACAAGGAAATGATGAAACTCTTCATCGAGCAGATGAGAGAAGTGGAAGAGTCCACCCAACTGTTGACGTGGCAGAAATTATCAGGCGTTGGACACATGCTTTACAGCGCAAAAGCTAATGAGGGAGAGGGTCCAGAAATTCTAAGAAGTGCGCATGAAGGCAGTTCAAGTGGTCATGCCGAGTCATTAGCTGTAACACTAGCTGAACATCAGCAGCACTTGGTTAGCTTTCAGGGTTATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

354

Amino Acids

40.6

Weight (kDa)

7.17

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	2 - 109	4.5e-22	NmrA-like family
eIF3a_PCI_TPR-like	PF22591	128 - 225	3.8e-40	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	972
AccBSI	CCGCTC	1 cut(s)	606
AciI	CCGC	1 cut(s)	604
AclWI	GGATC	1 cut(s)	293
AcsI	RAATTY	3 cut(s)	23, 51, 957
AcuI	CTGAAG	1 cut(s)	584
AcvI	CACGTG	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	96
AflIII	ACRYGT	1 cut(s)	671
AgsI	TTSAA	7 cut(s)	81, 313, 584, 614, 698, 783, 987
AjiI	CACGTC	1 cut(s)	888
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	5 cut(s)	181, 272, 559, 677, 1033
ApoI	RAATTY	3 cut(s)	23, 51, 957
Asp700I	GAANNNNTTC	3 cut(s)	618, 807, 839
AspLEI	GCGC	4 cut(s)	199, 714, 929, 973
AspS9I	GGNCC	3 cut(s)	34, 187, 950
AsuC2I	CCSGG	1 cut(s)	186
AsuII	TTCGAA	1 cut(s)	436
AvaII	GGWCC	2 cut(s)	34, 950
BanII	GRGCYC	1 cut(s)	376
BbrPI	CACGTG	1 cut(s)	674
BbvI	GCAGC	5 cut(s)	193, 259, 571, 664, 1045
BccI	CCATC	4 cut(s)	25, 55, 667, 718
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	3 cut(s)	549, 1019, 1063
BfoI	RGCGCY	1 cut(s)	200
BglII	AGATCT	1 cut(s)	785
BisI	GCNGC	5 cut(s)	182, 273, 560, 678, 1034
BlsI	GCNGC	5 cut(s)	183, 274, 561, 679, 1035
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	2 cut(s)	34, 950
BmgBI	CACGTC	1 cut(s)	888
BmgT120I	GGNCC	3 cut(s)	34, 187, 950
BmiI	GGNNCC	2 cut(s)	36, 951
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	674
BsaHI	GRCGYC	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	3 cut(s)	66, 729, 811
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	513
BseRI	GAGGAG	1 cut(s)	783
BseXI	GCAGC	5 cut(s)	193, 259, 571, 664, 1045
BsgI	GTGCAG	2 cut(s)	200, 501
BshFI	GGCC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	2 cut(s)	221, 242
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	492
BsmFI	GGGAC	2 cut(s)	221, 242
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	492
Bsp119I	TTCGAA	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	298, 490, 785
BspACI	CCGC	1 cut(s)	604
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	36, 951
BspPI	GGATC	1 cut(s)	293
BspQI	GCTCTTC	1 cut(s)	798
BspT104I	TTCGAA	1 cut(s)	436
BspTNI	GGTCTC	1 cut(s)	492
BsrBI	CCGCTC	1 cut(s)	606
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	3 cut(s)	298, 490, 785
BssNI	GRCGYC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	203
Bst4CI	ACNGT	3 cut(s)	537, 588, 882
Bst6I	CTCTTC	3 cut(s)	798, 845, 861
BstACI	GRCGYC	1 cut(s)	100
BstBAI	YACGTR	1 cut(s)	674
BstBI	TTCGAA	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	410, 530
BstDEI	CTNAG	2 cut(s)	522, 962
BstF5I	GGATG	3 cut(s)	66, 729, 811
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	4 cut(s)	199, 714, 929, 973
BstKTI	GATC	3 cut(s)	301, 493, 788
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	3 cut(s)	298, 490, 785
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	1 cut(s)	184
BstV1I	GCAGC	5 cut(s)	193, 259, 571, 664, 1045
BstX2I	RGATCY	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	785
BsuRI	GGCC	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	888
BtsCI	GGATG	3 cut(s)	66, 729, 811
Cac8I	GCNNGC	2 cut(s)	410, 530
CfoI	GCGC	4 cut(s)	199, 714, 929, 973
Cfr13I	GGNCC	3 cut(s)	34, 187, 950
CseI	GACGC	1 cut(s)	89
CspCI	CAANNNNNGTGG	2 cut(s)	291, 326
CviAII	CATG	6 cut(s)	358, 623, 637, 916, 974, 995
DdeI	CTNAG	2 cut(s)	522, 962
DpnI	GATC	3 cut(s)	300, 492, 787
DpnII	GATC	3 cut(s)	298, 490, 785
Eam1104I	CTCTTC	3 cut(s)	798, 845, 861
EarI	CTCTTC	3 cut(s)	798, 845, 861
Eco130I	CCWWGG	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	492
Eco47I	GGWCC	2 cut(s)	34, 950
Eco57I	CTGAAG	1 cut(s)	584
Eco72I	CACGTG	1 cut(s)	674
EcoRI	GAATTC	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	6 cut(s)	361, 626, 640, 919, 977, 998
FaiI	YATR	9 cut(s)	153, 359, 445, 486, 624, 638, 917, 975, 996
FaqI	GGGAC	2 cut(s)	221, 242
FatI	CATG	6 cut(s)	357, 622, 636, 915, 973, 994
Fnu4HI	GCNGC	5 cut(s)	182, 273, 560, 678, 1034
FokI	GGATG	3 cut(s)	73, 736, 798
FriOI	GRGCYC	1 cut(s)	376
Fsp4HI	GCNGC	5 cut(s)	182, 273, 560, 678, 1034
FspAI	RTGCGCAY	1 cut(s)	972
FspBI	CTAG	3 cut(s)	549, 1019, 1063
FspI	TGCGCA	1 cut(s)	972
GlaI	GCGC	4 cut(s)	198, 713, 928, 972
GluI	GCNGC	5 cut(s)	182, 273, 560, 678, 1034
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	4 cut(s)	199, 714, 929, 973
Hin1I	GRCGYC	1 cut(s)	100
Hin1II	CATG	6 cut(s)	361, 626, 640, 919, 977, 998
Hin6I	GCGC	4 cut(s)	197, 712, 927, 971
HinP1I	GCGC	4 cut(s)	197, 712, 927, 971
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HinfI	GANTC	5 cut(s)	9, 460, 808, 869, 1001
HpaII	CCGG	1 cut(s)	185
Hpy166II	GTNNAC	3 cut(s)	368, 873, 885
Hpy188I	TCNGA	3 cut(s)	22, 477, 802
Hpy188III	TCNNGA	7 cut(s)	217, 286, 457, 542, 749, 783, 953
Hpy8I	GTNNAC	3 cut(s)	368, 873, 885
HpyAV	CCTTC	4 cut(s)	180, 286, 432, 971
HpyCH4III	ACNGT	3 cut(s)	537, 588, 882
HpyCH4IV	ACGT	2 cut(s)	673, 887
HpyCH4V	TGCA	9 cut(s)	4, 49, 144, 181, 357, 408, 518, 532, 636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	522, 962
HpySE526I	ACGT	2 cut(s)	673, 887
Hsp92I	GRCGYC	1 cut(s)	100
Hsp92II	CATG	6 cut(s)	361, 626, 640, 919, 977, 998
HspAI	GCGC	4 cut(s)	197, 712, 927, 971
Kzo9I	GATC	3 cut(s)	298, 490, 785
LguI	GCTCTTC	1 cut(s)	798
Lsp1109I	GCAGC	5 cut(s)	193, 259, 571, 664, 1045
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	3 cut(s)	549, 1019, 1063
MaeII	ACGT	2 cut(s)	673, 887
MaeIII	GTNAC	2 cut(s)	214, 1012
MalI	GATC	3 cut(s)	300, 492, 787
MbiI	CCGCTC	1 cut(s)	606
MboI	GATC	3 cut(s)	298, 490, 785
MboII	GAAGA	5 cut(s)	577, 626, 785, 832, 878
MflI	RGATCY	1 cut(s)	785
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	8 cut(s)	23, 51, 145, 261, 715, 735, 896, 957
MlyI	GAGTC	2 cut(s)	878, 1010
MmeI	TCCRAC	2 cut(s)	12, 889
MnlI	CCTC	8 cut(s)	200, 210, 342, 691, 714, 761, 934, 940
MroXI	GAANNNNTTC	3 cut(s)	618, 807, 839
MseI	TTAA	2 cut(s)	642, 744
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	392
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	3 cut(s)	298, 490, 785
NlaIII	CATG	6 cut(s)	361, 626, 640, 919, 977, 998
NlaIV	GGNNCC	2 cut(s)	36, 951
NmeAIII	GCCGAG	2 cut(s)	115, 1024
NmuCI	GTSAC	1 cut(s)	214
NsbI	TGCGCA	1 cut(s)	972
NspI	RCATGY	1 cut(s)	919
NspV	TTCGAA	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	798
PctI	GAATGC	1 cut(s)	120
PdmI	GAANNNNTTC	3 cut(s)	618, 807, 839
PfeI	GAWTC	3 cut(s)	9, 460, 808
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	5 cut(s)	183, 274, 561, 679, 1035
PleI	GAGTC	2 cut(s)	877, 1009
PmaCI	CACGTG	1 cut(s)	674
PmlI	CACGTG	1 cut(s)	674
PpsI	GAGTC	2 cut(s)	877, 1009
Ppu21I	YACGTR	1 cut(s)	674
PspCI	CACGTG	1 cut(s)	674
PspN4I	GGNNCC	2 cut(s)	36, 951
PspPI	GGNCC	3 cut(s)	34, 187, 950
PsuI	RGATCY	1 cut(s)	785
PsyI	GACNNNGTC	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	562
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	2 cut(s)	642, 744
SatI	GCNGC	5 cut(s)	182, 273, 560, 678, 1034
Sau3AI	GATC	3 cut(s)	298, 490, 785
Sau96I	GGNCC	3 cut(s)	34, 187, 950
SchI	GAGTC	2 cut(s)	878, 1010
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	376
SfaNI	GCATC	1 cut(s)	36
SfuI	TTCGAA	1 cut(s)	436
SinI	GGWCC	2 cut(s)	34, 950
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	8 cut(s)	23, 51, 145, 261, 715, 735, 896, 957
SsiI	CCGC	1 cut(s)	604
SspMI	CTAG	3 cut(s)	549, 1019, 1063
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	3 cut(s)	537, 588, 882
TaiI	ACGT	2 cut(s)	676, 890
TaqI	TCGA	4 cut(s)	391, 436, 762, 846
TaqII	GACCGA	1 cut(s)	516
TasI	AATT	8 cut(s)	23, 51, 145, 261, 715, 735, 896, 957
TfiI	GAWTC	3 cut(s)	9, 460, 808
Tru1I	TTAA	2 cut(s)	642, 744
Tru9I	TTAA	2 cut(s)	642, 744
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	5 cut(s)	181, 272, 559, 677, 1033
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	5 cut(s)	611, 800, 832, 848, 990
TspGWI	ACGGA	2 cut(s)	246, 443
Tth111I	GACNNNGTC	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	34, 950
XapI	RAATTY	3 cut(s)	23, 51, 957
XceI	RCATGY	1 cut(s)	919
XmnI	GAANNNNTTC	3 cut(s)	618, 807, 839
XspI	CTAG	3 cut(s)	549, 1019, 1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.