Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Reverse (-)

48439884 .. 48445151

Gene Structure 5268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G025160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGACGGCACATCGAGCCTTTCAGTTCTGCAAGCAATACAAACGAACTACGGAGTTTCGAAGGTTATGTGAAATCATCAGGAATCATCTGGCTAATCTGAACAAGTATAGAGATCAAAGAGACCGACCTGACCTATCTGCACCTGAGAGCTTGCAACTGTATCTTGATACTAGATTTGAGCAGCTGAAGATAGCTACTGAACTTGAACTGTGGCAGGAAGCGTTCCGCTCTGTTGAAGATATTCATGGATTGATGTGCATGGTTAAGAAAACCCCTAAACCATCGTTGATGGTGGTTTACTATGCGAAGCTCACAGAAATTTTTTGGATTTCTGCTAGCCACCTTAATCATGCTTATGCATGGTTCAAGCTATTCTCGCTTCAGAAAAGCTTTAACAAAAACTTAAGTCAGAAGGATTTGCAGTTAATAGCATCATCTGTTGTCTTGGCTGCACTTTCAGTTCCCCCCTATGATCAGACACGTGCTGCCTCTCACTTGGAACTTGAAAATGAGAAAGAGCGCAATTTGAGGATGGCTAATCTAATTGGCTTTAATCTTGACCCCAAAATCGACAGAGGAGATGTGATTCGACTTATAATTGTTCCCCAAACTGATAATGTGCTTTATGGCCAGCTTTCAAGATCTGCTCTTCTATCAGAACTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

222

Amino Acids

25.89

Weight (kDa)

9.08

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF3a_PCI_TPR-like	PF22591	2 - 189	5e-63	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	596
AccBSI	CCGCTC	1 cut(s)	228
AciI	CCGC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	1 cut(s)	318
AcuI	CTGAAG	2 cut(s)	206, 365
AcvI	CACGTG	1 cut(s)	482
AflII	CTTAAG	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	479
AgsI	TTSAA	5 cut(s)	206, 236, 367, 506, 639
AluBI	AGCT	7 cut(s)	150, 184, 194, 310, 370, 390, 634
AluI	AGCT	7 cut(s)	150, 184, 194, 310, 370, 390, 634
Alw26I	GTCTC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	628
ApeKI	GCWGC	3 cut(s)	181, 449, 485
ApoI	RAATTY	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	522
AsuII	TTCGAA	1 cut(s)	58
AsuNHI	GCTAGC	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	630
BbrPI	CACGTG	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	193, 436, 472
BccI	CCATC	3 cut(s)	283, 289, 526
BceAI	ACGGC	1 cut(s)	21
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	3 cut(s)	171, 336, 667
BfrI	CTTAAG	1 cut(s)	403
BglII	AGATCT	1 cut(s)	641
BisI	GCNGC	3 cut(s)	182, 450, 486
BlsI	GCNGC	3 cut(s)	183, 451, 487
BmsI	GCATC	1 cut(s)	440
BmtI	GCTAGC	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	482
BsaI	GGTCTC	1 cut(s)	114
BseGI	GGATG	1 cut(s)	537
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	591
BseXI	GCAGC	3 cut(s)	193, 436, 472
BsgI	GTGCAG	2 cut(s)	123, 435
BshFI	GGCC	1 cut(s)	630
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	630
Bso31I	GGTCTC	1 cut(s)	114
Bsp119I	TTCGAA	1 cut(s)	58
Bsp143I	GATC	3 cut(s)	112, 472, 641
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	630
BspCNI	CTCAG	1 cut(s)	136
BspOI	GCTAGC	1 cut(s)	339
BspQI	GCTCTTC	1 cut(s)	654
BspT104I	TTCGAA	1 cut(s)	58
BspTI	CTTAAG	1 cut(s)	403
BspTNI	GGTCTC	1 cut(s)	114
BsrBI	CCGCTC	1 cut(s)	228
BssMI	GATC	3 cut(s)	112, 472, 641
Bst4CI	ACNGT	2 cut(s)	159, 210
Bst6I	CTCTTC	1 cut(s)	654
BstAFI	CTTAAG	1 cut(s)	403
BstBAI	YACGTR	1 cut(s)	482
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	4 cut(s)	32, 152, 337, 632
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	3 cut(s)	115, 475, 644
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	112, 472, 641
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 376
BstV1I	GCAGC	3 cut(s)	193, 436, 472
BstX2I	RGATCY	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	641
BsuRI	GGCC	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	537
Cac8I	GCNNGC	4 cut(s)	32, 152, 337, 632
CfoI	GCGC	1 cut(s)	522
CviAII	CATG	4 cut(s)	245, 259, 350, 360
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	3 cut(s)	114, 474, 643
DpnII	GATC	3 cut(s)	112, 472, 641
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
Eco31I	GGTCTC	1 cut(s)	114
Eco57I	CTGAAG	2 cut(s)	206, 365
Eco72I	CACGTG	1 cut(s)	482
EcoT22I	ATGCAT	1 cut(s)	361
FaeI	CATG	4 cut(s)	248, 262, 353, 363
FatI	CATG	4 cut(s)	244, 258, 349, 359
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	182, 450, 486
FokI	GGATG	1 cut(s)	544
Fsp4HI	GCNGC	3 cut(s)	182, 450, 486
FspBI	CTAG	3 cut(s)	171, 336, 667
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	3 cut(s)	182, 450, 486
HaeIII	GGCC	1 cut(s)	630
HhaI	GCGC	1 cut(s)	522
Hin1II	CATG	4 cut(s)	248, 262, 353, 363
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	2 cut(s)	82, 586
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	5 cut(s)	99, 384, 411, 477, 658
Hpy188III	TCNNGA	4 cut(s)	79, 164, 557, 639
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	54, 406
HpyCH4III	ACNGT	2 cut(s)	159, 210
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	7 cut(s)	30, 140, 154, 258, 359, 421, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 376
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	4 cut(s)	248, 262, 353, 363
HspAI	GCGC	1 cut(s)	520
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	112, 472, 641
LguI	GCTCTTC	1 cut(s)	654
LpnPI	CCDG	6 cut(s)	64, 74, 141, 156, 200, 644
Lsp1109I	GCAGC	3 cut(s)	193, 436, 472
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	3 cut(s)	171, 336, 667
MaeII	ACGT	1 cut(s)	481
MalI	GATC	3 cut(s)	114, 474, 643
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	3 cut(s)	112, 472, 641
MboII	GAAGA	3 cut(s)	199, 248, 641
MflI	RGATCY	1 cut(s)	641
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	4 cut(s)	318, 523, 543, 597
MluNI	TGGCCA	1 cut(s)	630
MnlI	CCTC	3 cut(s)	499, 522, 569
Mox20I	TGGCCA	1 cut(s)	630
Mph1103I	ATGCAT	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	6 cut(s)	264, 345, 393, 404, 425, 552
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	184
MspCI	CTTAAG	1 cut(s)	403
MwoI	GCNNNNNNNGC	2 cut(s)	14, 376
NdeII	GATC	3 cut(s)	112, 472, 641
NheI	GCTAGC	1 cut(s)	335
NlaIII	CATG	4 cut(s)	248, 262, 353, 363
NsiI	ATGCAT	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	82, 586
PkrI	GCNGC	3 cut(s)	183, 451, 487
PmaCI	CACGTG	1 cut(s)	482
PmlI	CACGTG	1 cut(s)	482
Ppu21I	YACGTR	1 cut(s)	482
PsiI	TTATAA	1 cut(s)	596
PspCI	CACGTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	654
SaqAI	TTAA	6 cut(s)	264, 345, 393, 404, 425, 552
SatI	GCNGC	3 cut(s)	182, 450, 486
Sau3AI	GATC	3 cut(s)	112, 472, 641
SfaNI	GCATC	1 cut(s)	440
SfuI	TTCGAA	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	4 cut(s)	318, 523, 543, 597
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	3 cut(s)	171, 336, 667
TaaI	ACNGT	2 cut(s)	159, 210
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	4 cut(s)	13, 58, 570, 589
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	4 cut(s)	318, 523, 543, 597
TfiI	GAWTC	2 cut(s)	82, 586
Tru1I	TTAA	6 cut(s)	264, 345, 393, 404, 425, 552
Tru9I	TTAA	6 cut(s)	264, 345, 393, 404, 425, 552
TseI	GCWGC	3 cut(s)	181, 449, 485
TspDTI	ATGAA	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	65
Vha464I	CTTAAG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	3 cut(s)	171, 336, 667
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.