Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Forward (+)

78336183 .. 78356626

Gene Structure 20444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG559400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAGCAAGATGAGAATTGCGTGGTTGGGAAGCAACCACGTACCTGTGAGCCAATCCATCTCGGTATATCTGAAGCCGGAATCTCCAGAAGAGGTCCAGGTGATGCCTCTTCTTGCTAGATCAAATATGGTCATTACTAGGGATATAGAGTGGGCAATCTTATTCTTGGGTTTGAGCAGGAAAATCGGTTTCATTAGTGAGGAGAGTCATGTTTCCATGGGAAAGCCTGTAGGTTTCATTAGTGAGGAGAGTCATGTTTCCATGGGACAGGATTTCGATAAGGTCTGGCCAATCTTCGATTCTACGCAATCTCGCGATTTTCGTAAGGTTGTGCAAGGGATTATTAGCGAGCACGAATCGCAAGGGGTGCTTCCCAGGAGCAATTCGAGGGTTTCATCACTTGCTACATGTTGTGGACCGAGGCGGGTGAAGTTTGCAATCATGGCGAATTTTGCGAAACCGGAAAATGCTTTGAAGCGAGCTGAAGAGTTGATCAATGTTGGGCAGAAGCAAGATGCATTGCAATCGCTTCATGATCTTATTACATCAAAGAGATATAGAGCATGGCAGAAGCCACTTGAAAAAATTATGTTTAAATATGTGGAGCTTTGTGTTGACTTGCACAAGGGTAGATTTGCCAAGGATGGTCTAATTCAGTACCGTATTATATGTCAACAAGTAAATGTCAGTTCCTTGGAAGAGGTGATCAAGCACTTCATGCATCTGTCAACTGAGAAAGCTGAGCAGGCACGTACCCAGGCTCAAGCATTAGAAGAAGCACTTGATGTTGATGACCTCGAAGCAGATAAGAGGCCTGAAGATCTAATGCTGAGTTATGTCAGTGAAGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

284

Amino Acids

32.35

Weight (kDa)

6.47

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS6_N	PF14661	90 - 151	1.4e-10	HAUS augmin-like complex subunit 6 N-terminus
eIF3a_PCI_TPR-like	PF22591	155 - 283	1.4e-39	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	315
AciI	CCGC	1 cut(s)	424
AcoI	YGGCCR	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	3 cut(s)	92, 504, 837
AfaI	GTAC	3 cut(s)	42, 659, 754
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	475, 581
AjnI	CCWGG	3 cut(s)	96, 374, 756
AjuI	GAANNNNNNNTTGG	2 cut(s)	283, 315
AluBI	AGCT	3 cut(s)	482, 607, 740
AluI	AGCT	3 cut(s)	482, 607, 740
Alw21I	GWGCWC	1 cut(s)	354
AoxI	GGCC	2 cut(s)	287, 812
ApoI	RAATTY	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	94, 416
AsuHPI	GGTGA	3 cut(s)	112, 439, 715
AvaII	GGWCC	2 cut(s)	94, 416
BalI	TGGCCA	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	354
BccI	CCATC	2 cut(s)	65, 638
BcgI	CGANNNNNNTGC	4 cut(s)	166, 200, 507, 541
BciT130I	CCWGG	3 cut(s)	98, 376, 758
BclI	TGATCA	2 cut(s)	492, 705
BfaI	CTAG	2 cut(s)	117, 138
BfmI	CTRYAG	1 cut(s)	228
BglII	AGATCT	1 cut(s)	820
BlpI	GCTNAGC	1 cut(s)	741
Bme1390I	CCNGG	3 cut(s)	98, 376, 758
Bme18I	GGWCC	2 cut(s)	94, 416
BmgT120I	GGNCC	2 cut(s)	94, 416
BmrFI	CCNGG	3 cut(s)	98, 376, 758
BmsI	GCATC	3 cut(s)	93, 505, 730
BpmI	CTGGAG	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	747
BsaAI	YACGTR	2 cut(s)	40, 752
BsaJI	CCNNGG	7 cut(s)	216, 261, 374, 419, 639, 693, 756
BsaWI	WCCGGW	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	518
BseBI	CCWGG	3 cut(s)	98, 376, 758
BseDI	CCNNGG	7 cut(s)	216, 261, 374, 419, 639, 693, 756
BseGI	GGATG	1 cut(s)	649
BseMI	GCAATG	1 cut(s)	518
BseMII	CTCAG	3 cut(s)	723, 732, 821
BseRI	GAGGAG	2 cut(s)	215, 260
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	289, 814
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	77, 461
BslFI	GGGAC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	289, 814
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	5 cut(s)	119, 492, 535, 705, 820
Bsp1720I	GCTNAGC	1 cut(s)	741
Bsp19I	CCATGG	2 cut(s)	216, 261
Bsp68I	TCGCGA	1 cut(s)	315
BspACI	CCGC	1 cut(s)	424
BspANI	GGCC	2 cut(s)	289, 814
BspCNI	CTCAG	3 cut(s)	724, 733, 822
BspFNI	CGCG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	518
BssECI	CCNNGG	7 cut(s)	216, 261, 374, 419, 639, 693, 756
BssMI	GATC	5 cut(s)	119, 492, 535, 705, 820
BssT1I	CCWWGG	4 cut(s)	216, 261, 639, 693
Bst2UI	CCWGG	3 cut(s)	98, 376, 758
Bst4CI	ACNGT	1 cut(s)	662
Bst6I	CTCTTC	5 cut(s)	84, 114, 480, 693, 840
BstAPI	GCANNNNNTGC	2 cut(s)	367, 718
BstBAI	YACGTR	2 cut(s)	40, 752
BstC8I	GCNNGC	3 cut(s)	350, 480, 747
BstDEI	CTNAG	3 cut(s)	732, 741, 830
BstDSI	CCRYGG	2 cut(s)	216, 261
BstF5I	GGATG	1 cut(s)	649
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	5 cut(s)	122, 495, 538, 708, 823
BstMBI	GATC	5 cut(s)	119, 492, 535, 705, 820
BstMWI	GCNNNNNNNGC	6 cut(s)	358, 367, 443, 452, 718, 746
BstNI	CCWGG	3 cut(s)	98, 376, 758
BstNSI	RCATGY	1 cut(s)	411
BstSCI	CCNGG	3 cut(s)	96, 374, 756
BstSFI	CTRYAG	1 cut(s)	228
BstUI	CGCG	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BsuRI	GGCC	2 cut(s)	289, 814
BtgI	CCRYGG	2 cut(s)	216, 261
BtsCI	GGATG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	847
BtuMI	TCGCGA	1 cut(s)	315
Cac8I	GCNNGC	3 cut(s)	350, 480, 747
CciI	TCATGA	1 cut(s)	532
Cfr13I	GGNCC	2 cut(s)	94, 416
Csp6I	GTAC	3 cut(s)	41, 658, 753
CviAII	CATG	9 cut(s)	209, 217, 254, 262, 408, 442, 533, 564, 718
CviQI	GTAC	3 cut(s)	41, 658, 753
DdeI	CTNAG	3 cut(s)	732, 741, 830
DpnI	GATC	5 cut(s)	121, 494, 537, 707, 822
DpnII	GATC	5 cut(s)	119, 492, 535, 705, 820
DraI	TTTAAA	1 cut(s)	595
EaeI	YGGCCR	1 cut(s)	287
Eam1104I	CTCTTC	5 cut(s)	84, 114, 480, 693, 840
EarI	CTCTTC	5 cut(s)	84, 114, 480, 693, 840
Eco130I	CCWWGG	4 cut(s)	216, 261, 639, 693
Eco147I	AGGCCT	1 cut(s)	814
Eco47I	GGWCC	2 cut(s)	94, 416
Eco57I	CTGAAG	3 cut(s)	92, 504, 837
EcoRII	CCWGG	3 cut(s)	96, 374, 756
EcoT14I	CCWWGG	4 cut(s)	216, 261, 639, 693
EcoT22I	ATGCAT	2 cut(s)	520, 723
ErhI	CCWWGG	4 cut(s)	216, 261, 639, 693
FaeI	CATG	9 cut(s)	212, 220, 257, 265, 411, 445, 536, 567, 721
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 765, 797
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	9 cut(s)	208, 216, 253, 261, 407, 441, 532, 563, 717
FauI	CCCGC	1 cut(s)	417
FbaI	TGATCA	2 cut(s)	492, 705
FokI	GGATG	1 cut(s)	656
FspBI	CTAG	2 cut(s)	117, 138
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	289, 814
HapII	CCGG	2 cut(s)	77, 461
Hin1II	CATG	9 cut(s)	212, 220, 257, 265, 411, 445, 536, 567, 721
HincII	GTYRAC	3 cut(s)	616, 674, 729
HindII	GTYRAC	3 cut(s)	616, 674, 729
HinfI	GANTC	5 cut(s)	80, 205, 250, 299, 356
HpaII	CCGG	2 cut(s)	77, 461
HphI	GGTGA	3 cut(s)	112, 439, 715
Hpy166II	GTNNAC	4 cut(s)	416, 616, 674, 729
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	3 cut(s)	86, 314, 533
Hpy8I	GTNNAC	4 cut(s)	416, 616, 674, 729
HpyCH4III	ACNGT	1 cut(s)	662
HpyCH4IV	ACGT	2 cut(s)	39, 751
HpyCH4V	TGCA	6 cut(s)	334, 437, 518, 523, 622, 721
HpyF10VI	GCNNNNNNNGC	6 cut(s)	358, 367, 443, 452, 718, 746
HpyF3I	CTNAG	3 cut(s)	732, 741, 830
HpySE526I	ACGT	2 cut(s)	39, 751
Hsp92II	CATG	9 cut(s)	212, 220, 257, 265, 411, 445, 536, 567, 721
Ksp22I	TGATCA	2 cut(s)	492, 705
Kzo9I	GATC	5 cut(s)	119, 492, 535, 705, 820
LmnI	GCTCC	2 cut(s)	378, 604
LweI	GCATC	3 cut(s)	93, 505, 730
MaeI	CTAG	2 cut(s)	117, 138
MaeII	ACGT	2 cut(s)	39, 751
MalI	GATC	5 cut(s)	121, 494, 537, 707, 822
MboI	GATC	5 cut(s)	119, 492, 535, 705, 820
MboII	GAAGA	7 cut(s)	101, 101, 286, 497, 710, 785, 830
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	1 cut(s)	354
MlsI	TGGCCA	1 cut(s)	289
MluCI	AATT	5 cut(s)	15, 382, 448, 585, 651
MluNI	TGGCCA	1 cut(s)	289
MlyI	GAGTC	2 cut(s)	214, 259
MnlI	CCTC	9 cut(s)	85, 117, 193, 238, 381, 414, 694, 804, 806
Mox20I	TGGCCA	1 cut(s)	289
Mph1103I	ATGCAT	2 cut(s)	520, 723
MscI	TGGCCA	1 cut(s)	289
MseI	TTAA	1 cut(s)	594
Msp20I	TGGCCA	1 cut(s)	289
MspI	CCGG	2 cut(s)	77, 461
MspR9I	CCNGG	3 cut(s)	98, 376, 758
MvaI	CCWGG	3 cut(s)	98, 376, 758
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	6 cut(s)	358, 367, 443, 452, 718, 746
NcoI	CCATGG	2 cut(s)	216, 261
NdeII	GATC	5 cut(s)	119, 492, 535, 705, 820
NlaIII	CATG	9 cut(s)	212, 220, 257, 265, 411, 445, 536, 567, 721
NruI	TCGCGA	1 cut(s)	315
NsiI	ATGCAT	2 cut(s)	520, 723
NspI	RCATGY	1 cut(s)	411
PagI	TCATGA	1 cut(s)	532
PceI	AGGCCT	1 cut(s)	814
PciI	ACATGT	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PfeI	GAWTC	3 cut(s)	80, 299, 356
PleI	GAGTC	2 cut(s)	213, 258
PpsI	GAGTC	2 cut(s)	213, 258
Ppu21I	YACGTR	2 cut(s)	40, 752
PscI	ACATGT	1 cut(s)	407
Psp6I	CCWGG	3 cut(s)	96, 374, 756
PspGI	CCWGG	3 cut(s)	96, 374, 756
PspPI	GGNCC	2 cut(s)	94, 416
PsuI	RGATCY	1 cut(s)	820
RruI	TCGCGA	1 cut(s)	315
RsaI	GTAC	3 cut(s)	42, 659, 754
RsaNI	GTAC	3 cut(s)	41, 658, 753
SaqAI	TTAA	1 cut(s)	594
Sau3AI	GATC	5 cut(s)	119, 492, 535, 705, 820
Sau96I	GGNCC	2 cut(s)	94, 416
SchI	GAGTC	2 cut(s)	214, 259
ScrFI	CCNGG	3 cut(s)	98, 376, 758
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	3 cut(s)	93, 505, 730
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	2 cut(s)	94, 416
SmlI	CTYRAG	1 cut(s)	762
SmoI	CTYRAG	1 cut(s)	762
Sse9I	AATT	5 cut(s)	15, 382, 448, 585, 651
SseBI	AGGCCT	1 cut(s)	814
SsiI	CCGC	1 cut(s)	424
SspMI	CTAG	2 cut(s)	117, 138
StuI	AGGCCT	1 cut(s)	814
StyD4I	CCNGG	3 cut(s)	96, 374, 756
StyI	CCWWGG	4 cut(s)	216, 261, 639, 693
TaaI	ACNGT	1 cut(s)	662
TaiI	ACGT	2 cut(s)	42, 754
TaqI	TCGA	4 cut(s)	276, 297, 386, 798
TaqII	GACCGA	1 cut(s)	433
TasI	AATT	5 cut(s)	15, 382, 448, 585, 651
TfiI	GAWTC	3 cut(s)	80, 299, 356
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	1 cut(s)	847
TspDTI	ATGAA	5 cut(s)	181, 226, 384, 521, 706
TspRI	CASTG	1 cut(s)	847
VpaK11BI	GGWCC	2 cut(s)	94, 416
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	1 cut(s)	411
XspI	CTAG	2 cut(s)	117, 138
Zsp2I	ATGCAT	2 cut(s)	520, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.