Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Forward (+)

84649067 .. 84649894

Gene Structure 828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG536200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCGAATTTTGCGAAACCGGAAAATGCTTTGAAGCGAGCTGAAGAGTTGATCAATGTTGGGCAGAAGCAAGATGCATTGCAATCGCTTCATGATCTTATTACATCAAAGAGATATAGAGCATGGCAGAAGCCACTTGAAAAAATTATGTTTAAATATGTGGAGCTTTGTGTTGACTTGCACAAGGGTAGATTTGCCAAGGATGGTCTAATTCAGTACCGTATTATATGTCAACAAGTAAATGTCAGTTCCTTGGAAGAGGTGATCAAGCACTTCATGCATCTGTCAACTGAGAAAGCTGAGCAGGCACGTACCCAGGCTCAAGCATTAGAAGAAGCACTTGATGTTGATGACCTCGAAGCAGATAAGAGGCCTGAAGATCTAATGCTGAGTTATTTTTTGTGGGAAACCTACAGAACAGTGCTTGAGATCTTGCGCAACAACTCAAAGTTGGAGGCCCTTTATGCA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

156

Amino Acids

18.24

Weight (kDa)

5.85

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF3a_PCI_TPR-like	PF22591	8 - 131	3.6e-39	eIF3a, PCI domain, TPR-like region
eIF3a_PCI_TPR-like	PF22591	133 - 155	8e-08	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	437
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	2 cut(s)	63, 396
AfaI	GTAC	2 cut(s)	218, 313
AgsI	TTSAA	2 cut(s)	34, 140
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	3 cut(s)	41, 166, 299
AluI	AGCT	3 cut(s)	41, 166, 299
AoxI	GGCC	2 cut(s)	371, 456
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	274
BccI	CCATC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BciT130I	CCWGG	1 cut(s)	317
BclI	TGATCA	2 cut(s)	51, 264
BfmI	CTRYAG	1 cut(s)	412
BglII	AGATCT	2 cut(s)	379, 429
BlpI	GCTNAGC	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	2 cut(s)	64, 289
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	2 cut(s)	306, 446
BsaAI	YACGTR	1 cut(s)	311
BsaJI	CCNNGG	3 cut(s)	198, 252, 315
BsaWI	WCCGGW	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	3 cut(s)	198, 252, 315
BseGI	GGATG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	3 cut(s)	282, 291, 380
BshFI	GGCC	2 cut(s)	373, 458
BsiSI	CCGG	1 cut(s)	20
BsnI	GGCC	2 cut(s)	373, 458
Bsp143I	GATC	5 cut(s)	51, 94, 264, 379, 429
Bsp1720I	GCTNAGC	1 cut(s)	300
BspANI	GGCC	2 cut(s)	373, 458
BspCNI	CTCAG	3 cut(s)	283, 292, 381
BspHI	TCATGA	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	198, 252, 315
BssMI	GATC	5 cut(s)	51, 94, 264, 379, 429
BssT1I	CCWWGG	2 cut(s)	198, 252
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	221, 421
Bst6I	CTCTTC	2 cut(s)	39, 252
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstBAI	YACGTR	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	39, 306
BstDEI	CTNAG	3 cut(s)	291, 300, 389
BstF5I	GGATG	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	5 cut(s)	54, 97, 267, 382, 432
BstMBI	GATC	5 cut(s)	51, 94, 264, 379, 429
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 277, 305, 464
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	412
BstX2I	RGATCY	2 cut(s)	379, 429
BstYI	RGATCY	2 cut(s)	379, 429
BsuRI	GGCC	2 cut(s)	373, 458
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	39, 306
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	217, 312
CviAII	CATG	3 cut(s)	92, 123, 277
CviJI	RGCY	7 cut(s)	41, 133, 166, 299, 320, 373, 458
CviKI_1	RGCY	7 cut(s)	41, 133, 166, 299, 320, 373, 458
CviQI	GTAC	2 cut(s)	217, 312
DdeI	CTNAG	3 cut(s)	291, 300, 389
DpnI	GATC	5 cut(s)	53, 96, 266, 381, 431
DpnII	GATC	5 cut(s)	51, 94, 264, 379, 429
DraI	TTTAAA	1 cut(s)	154
Eam1104I	CTCTTC	2 cut(s)	39, 252
EarI	CTCTTC	2 cut(s)	39, 252
Eco130I	CCWWGG	2 cut(s)	198, 252
Eco147I	AGGCCT	1 cut(s)	373
Eco57I	CTGAAG	2 cut(s)	63, 396
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	198, 252
EcoT22I	ATGCAT	2 cut(s)	79, 282
ErhI	CCWWGG	2 cut(s)	198, 252
FaeI	CATG	3 cut(s)	95, 126, 280
FaiI	YATR	9 cut(s)	93, 117, 124, 149, 159, 227, 229, 278, 465
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	3 cut(s)	91, 122, 276
FbaI	TGATCA	2 cut(s)	51, 264
FokI	GGATG	1 cut(s)	215
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	1 cut(s)	437
HaeIII	GGCC	2 cut(s)	373, 458
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	95, 126, 280
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HincII	GTYRAC	3 cut(s)	175, 233, 288
HindII	GTYRAC	3 cut(s)	175, 233, 288
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	3 cut(s)	175, 233, 288
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	3 cut(s)	175, 233, 288
HpyCH4III	ACNGT	2 cut(s)	221, 421
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	5 cut(s)	77, 82, 181, 280, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 277, 305, 464
HpyF3I	CTNAG	3 cut(s)	291, 300, 389
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	3 cut(s)	95, 126, 280
HspAI	GCGC	1 cut(s)	436
Ksp22I	TGATCA	2 cut(s)	51, 264
Kzo9I	GATC	5 cut(s)	51, 94, 264, 379, 429
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	33, 290, 302, 329, 387
LweI	GCATC	2 cut(s)	64, 289
MaeII	ACGT	1 cut(s)	310
MalI	GATC	5 cut(s)	53, 96, 266, 381, 431
MboI	GATC	5 cut(s)	51, 94, 264, 379, 429
MboII	GAAGA	4 cut(s)	56, 269, 344, 389
MflI	RGATCY	2 cut(s)	379, 429
MluCI	AATT	3 cut(s)	7, 144, 210
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	4 cut(s)	253, 363, 365, 448
Mph1103I	ATGCAT	2 cut(s)	79, 282
MseI	TTAA	1 cut(s)	153
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	4 cut(s)	11, 277, 305, 464
NdeII	GATC	5 cut(s)	51, 94, 264, 379, 429
NlaIII	CATG	3 cut(s)	95, 126, 280
NsbI	TGCGCA	1 cut(s)	437
NsiI	ATGCAT	2 cut(s)	79, 282
PagI	TCATGA	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	373
Ppu21I	YACGTR	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	379, 429
RsaI	GTAC	2 cut(s)	218, 313
RsaNI	GTAC	2 cut(s)	217, 312
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	5 cut(s)	51, 94, 264, 379, 429
Sau96I	GGNCC	1 cut(s)	457
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	7 cut(s)	43, 168, 264, 301, 313, 357, 413
SfaNI	GCATC	2 cut(s)	64, 289
SfcI	CTRYAG	1 cut(s)	412
SmlI	CTYRAG	2 cut(s)	321, 425
SmoI	CTYRAG	2 cut(s)	321, 425
Sse9I	AATT	3 cut(s)	7, 144, 210
SseBI	AGGCCT	1 cut(s)	373
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	2 cut(s)	198, 252
TaaI	ACNGT	2 cut(s)	221, 421
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	357
TasI	AATT	3 cut(s)	7, 144, 210
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	426
TspDTI	ATGAA	2 cut(s)	80, 265
TspRI	CASTG	1 cut(s)	426
XapI	RAATTY	1 cut(s)	7
Zsp2I	ATGCAT	2 cut(s)	79, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.