Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000361.1

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Forward (+)

155739 .. 156143

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000361.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgtttaaatatgtggagctttgtgttgacttgcgcaagggtagatttgccaaggatggtctgattcagtaccgtattatatgtcaacaagtaaatgtcagttccttggaagaggtgatcaagcacttcatgcatctgtcaactgagaaagctgagcaggcacgtacccaggctcaagcattagaagaagcacttgatgttgatgacctcgaagcagataagaggcctgaagatctaatgctgagttatgtcagtgaagagaaaggaaaagataggtctgatcgtgaagttgttactccttggttcaagtttttgtgggaaacctacagaacagtgcttgagatcttgcgcaacaactcaaagttggaggccctttatgcggtactgtatttcttgtttagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

134

Amino Acids

15.9

Weight (kDa)

5.3

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	35, 350
AciI	CCGC	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	3 cut(s)	71, 166, 384
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	19, 152
AluI	AGCT	2 cut(s)	19, 152
AoxI	GGCC	2 cut(s)	224, 369
AspLEI	GCGC	2 cut(s)	36, 351
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	127
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	170
BclI	TGATCA	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	325
BglII	AGATCT	2 cut(s)	232, 342
BlpI	GCTNAGC	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	142
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	159, 359
BsaAI	YACGTR	1 cut(s)	164
BsaJI	CCNNGG	4 cut(s)	51, 105, 168, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	4 cut(s)	51, 105, 168, 299
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	3 cut(s)	135, 144, 233
BshFI	GGCC	2 cut(s)	226, 371
BslI	CCNNNNNNNGG	1 cut(s)	379
BsnI	GGCC	2 cut(s)	226, 371
Bsp143I	GATC	4 cut(s)	117, 232, 280, 342
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	2 cut(s)	226, 371
BspCNI	CTCAG	3 cut(s)	136, 145, 234
BssECI	CCNNGG	4 cut(s)	51, 105, 168, 299
BssMI	GATC	4 cut(s)	117, 232, 280, 342
BssT1I	CCWWGG	3 cut(s)	51, 105, 299
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	3 cut(s)	74, 334, 387
Bst6I	CTCTTC	2 cut(s)	105, 252
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	3 cut(s)	144, 153, 242
BstF5I	GGATG	1 cut(s)	61
BstHHI	GCGC	2 cut(s)	36, 351
BstKTI	GATC	4 cut(s)	120, 235, 283, 345
BstMBI	GATC	4 cut(s)	117, 232, 280, 342
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 158, 377
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	325
BstX2I	RGATCY	2 cut(s)	232, 342
BstYI	RGATCY	2 cut(s)	232, 342
BsuRI	GGCC	2 cut(s)	226, 371
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	259, 339
Cac8I	GCNNGC	1 cut(s)	159
CfoI	GCGC	2 cut(s)	36, 351
Cfr13I	GGNCC	1 cut(s)	370
Csp6I	GTAC	3 cut(s)	70, 165, 383
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	5 cut(s)	19, 152, 173, 226, 371
CviKI_1	RGCY	5 cut(s)	19, 152, 173, 226, 371
CviQI	GTAC	3 cut(s)	70, 165, 383
DdeI	CTNAG	3 cut(s)	144, 153, 242
DpnI	GATC	4 cut(s)	119, 234, 282, 344
DpnII	GATC	4 cut(s)	117, 232, 280, 342
DraI	TTTAAA	1 cut(s)	7
Eam1104I	CTCTTC	2 cut(s)	105, 252
EarI	CTCTTC	2 cut(s)	105, 252
Eco130I	CCWWGG	3 cut(s)	51, 105, 299
Eco147I	AGGCCT	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	3 cut(s)	51, 105, 299
EcoT22I	ATGCAT	1 cut(s)	135
ErhI	CCWWGG	3 cut(s)	51, 105, 299
FaeI	CATG	1 cut(s)	133
FaiI	YATR	6 cut(s)	12, 80, 82, 131, 249, 378
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	117
FokI	GGATG	1 cut(s)	68
FspI	TGCGCA	2 cut(s)	35, 350
GlaI	GCGC	2 cut(s)	35, 350
HaeIII	GGCC	2 cut(s)	226, 371
HhaI	GCGC	2 cut(s)	36, 351
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	2 cut(s)	34, 349
HinP1I	GCGC	2 cut(s)	34, 349
HincII	GTYRAC	3 cut(s)	28, 86, 141
HindII	GTYRAC	3 cut(s)	28, 86, 141
HinfI	GANTC	1 cut(s)	64
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	3 cut(s)	28, 86, 141
Hpy188I	TCNGA	2 cut(s)	63, 280
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	3 cut(s)	28, 86, 141
HpyCH4III	ACNGT	3 cut(s)	74, 334, 387
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 158, 377
HpyF3I	CTNAG	3 cut(s)	144, 153, 242
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	2 cut(s)	34, 349
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	117, 232, 280, 342
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	4 cut(s)	143, 155, 182, 240
LweI	GCATC	1 cut(s)	142
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	4 cut(s)	119, 234, 282, 344
MboI	GATC	4 cut(s)	117, 232, 280, 342
MboII	GAAGA	4 cut(s)	122, 197, 242, 269
MflI	RGATCY	2 cut(s)	232, 342
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	4 cut(s)	106, 216, 218, 361
Mph1103I	ATGCAT	1 cut(s)	135
MseI	TTAA	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	130, 158, 377
NdeII	GATC	4 cut(s)	117, 232, 280, 342
NlaIII	CATG	1 cut(s)	133
NsbI	TGCGCA	2 cut(s)	35, 350
NsiI	ATGCAT	1 cut(s)	135
PceI	AGGCCT	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	370
PsuI	RGATCY	2 cut(s)	232, 342
RsaI	GTAC	3 cut(s)	71, 166, 384
RsaNI	GTAC	3 cut(s)	70, 165, 383
SaqAI	TTAA	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	117, 232, 280, 342
Sau96I	GGNCC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	7 cut(s)	21, 117, 154, 166, 210, 278, 326
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	325
SmlI	CTYRAG	2 cut(s)	174, 338
SmoI	CTYRAG	2 cut(s)	174, 338
SseBI	AGGCCT	1 cut(s)	226
SsiI	CCGC	1 cut(s)	380
StuI	AGGCCT	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	3 cut(s)	51, 105, 299
TaaI	ACNGT	3 cut(s)	74, 334, 387
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	2 cut(s)	259, 339
TspDTI	ATGAA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	259, 339
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.