Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000670.1

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Reverse (-)

20087 .. 27395

Gene Structure 7309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000670.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

atggcgaattttgcgaaaccggaaaatgctttgaagcgagctgaagagttgatcaatgttgggcagaagcaagatgcattgcaatcgcttcatgatcttattacatcaaagagatatagagcatggcagaagccacttgaaaaaattatgtttaaatatgtggagctttgtgttgacttgcgcaagggtagatttgccaaggatggtctgattcagtaccgcattatatgtcaacaagtaaatgtcagttccttggaagaggtgatcaagcacttcatgcatctgtcaactgagaaagctgagcaggcacgtacccaggctcaagcattagaagaagcacttgatgttgatgacctcgaagcagataagaggcctgaagatctaatgctgagttatatcttgcgcaacaactcaaagttggaggccctttatgtaatgacggcacatcgagcctttcagttctgcaagcaatacaaacgaactacggagtttcgaaggttatgtgaaatcatcaggaatcatctggctaatctgaacaagtatagagatcaaagagaccgacctgacctatctgcacctgagagcttgcaactgtatcttgatactagatttgagcagctgaagatagctactgaacttgaactgtggcaggaagcgttccgctctgttgaagatattcatggattgatgtgcatggttaagaaaacccctaaaccatcgttgatggtggtttactatgcgaagctcacagaaattttttggatttctgctagccaccttaatcatgcttatgcatggttcaagctattctcgcttcagaaaagctttaacaaaaacttaagtcagaaggatttgcagttaatagcatcatctgttgtcttggctgcactttcagttcccccctatgatcagacacgtgctgcctctcacttggaacttgaaaatgagaaagagcgcaatttgaggatggctaatctaattggctttaatcttgaccccaaaatcgacagaggagatgtgctttcaagatctgctcttctatcagaactggttacaaagaatatagtatgtataaataatgagttattaagtggtagagaagttgcttttctagatgaggatgaattcggtttgcaaggttatgacgagttcaatttgctgggtgagaatggaattgatttgcaaggtgaggaagaagatgatttagtaagtgaggatgaagttgatgtgcaaactgaggagacttttcaatgtaatgattcttctttaagttcaaatgaagacaaagagaagaaagaagaactatatattggaatggagtttagttctgatgagagcgcatataaagcttatgctaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

453

Amino Acids

52.43

Weight (kDa)

5.1

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	182, 404
AccBSI	CCGCTC	1 cut(s)	663
AciI	CCGC	2 cut(s)	220, 661
AcsI	RAATTY	3 cut(s)	7, 753, 1124
AcuI	CTGAAG	4 cut(s)	63, 396, 641, 800
AcvI	CACGTG	1 cut(s)	917
AfaI	GTAC	2 cut(s)	218, 313
AflII	CTTAAG	1 cut(s)	838
AflIII	ACRYGT	1 cut(s)	914
AjnI	CCWGG	1 cut(s)	315
AjuI	GAANNNNNNNTTGG	2 cut(s)	1293, 1325
Alw26I	GTCTC	2 cut(s)	549, 1235
AoxI	GGCC	2 cut(s)	371, 423
ApeKI	GCWGC	3 cut(s)	616, 884, 920
ApoI	RAATTY	3 cut(s)	7, 753, 1124
Asp700I	GAANNNNTTC	1 cut(s)	675
AspLEI	GCGC	4 cut(s)	183, 405, 957, 1340
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	3 cut(s)	274, 1175, 1199
AsuII	TTCGAA	1 cut(s)	493
AsuNHI	GCTAGC	1 cut(s)	770
BarI	GAAGNNNNNNTAC	2 cut(s)	1246, 1278
BbrPI	CACGTG	1 cut(s)	917
BbsI	GAAGAC	1 cut(s)	1287
BbvI	GCAGC	3 cut(s)	628, 871, 907
BccI	CCATC	4 cut(s)	197, 718, 724, 961
BceAI	ACGGC	1 cut(s)	456
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BciT130I	CCWGG	1 cut(s)	317
BclI	TGATCA	3 cut(s)	51, 264, 907
BcoDI	GTCTC	2 cut(s)	549, 1235
BfaI	CTAG	3 cut(s)	606, 771, 1112
BfrI	CTTAAG	1 cut(s)	838
BglII	AGATCT	2 cut(s)	379, 1028
BisI	GCNGC	3 cut(s)	617, 885, 921
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	3 cut(s)	618, 886, 922
Bme1390I	CCNGG	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	424
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	3 cut(s)	64, 289, 875
BmtI	GCTAGC	1 cut(s)	774
BpiI	GAAGAC	1 cut(s)	1287
Bpu1102I	GCTNAGC	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	306
BsaAI	YACGTR	2 cut(s)	311, 917
BsaI	GGTCTC	1 cut(s)	549
BsaJI	CCNNGG	3 cut(s)	198, 252, 315
BsaWI	WCCGGW	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	1053
Bse3DI	GCAATG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	3 cut(s)	198, 252, 315
BseGI	GGATG	4 cut(s)	208, 972, 1126, 1222
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	5 cut(s)	282, 291, 380, 570, 1227
BseNI	ACTGG	1 cut(s)	1053
BseRI	GAGGAG	2 cut(s)	1026, 1253
BseXI	GCAGC	3 cut(s)	628, 871, 907
BseYI	CCCAGC	1 cut(s)	1159
BsgI	GTGCAG	2 cut(s)	558, 870
BshFI	GGCC	2 cut(s)	373, 425
BsiSI	CCGG	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	549, 1235
BsnI	GGCC	2 cut(s)	373, 425
Bso31I	GGTCTC	1 cut(s)	549
Bsp119I	TTCGAA	1 cut(s)	493
Bsp143I	GATC	7 cut(s)	51, 94, 264, 379, 547, 907, 1028
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	2 cut(s)	220, 661
BspANI	GGCC	2 cut(s)	373, 425
BspCNI	CTCAG	5 cut(s)	283, 292, 381, 571, 1228
BspHI	TCATGA	1 cut(s)	91
BspOI	GCTAGC	1 cut(s)	774
BspQI	GCTCTTC	1 cut(s)	1041
BspT104I	TTCGAA	1 cut(s)	493
BspTI	CTTAAG	1 cut(s)	838
BspTNI	GGTCTC	1 cut(s)	549
BsrBI	CCGCTC	1 cut(s)	663
BsrDI	GCAATG	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	1053
BssECI	CCNNGG	3 cut(s)	198, 252, 315
BssMI	GATC	7 cut(s)	51, 94, 264, 379, 547, 907, 1028
BssT1I	CCWWGG	2 cut(s)	198, 252
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	594, 645
Bst6I	CTCTTC	3 cut(s)	39, 252, 1041
BstAFI	CTTAAG	1 cut(s)	838
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstBAI	YACGTR	2 cut(s)	311, 917
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	5 cut(s)	39, 306, 467, 587, 772
BstDEI	CTNAG	5 cut(s)	291, 300, 389, 579, 1236
BstF5I	GGATG	4 cut(s)	208, 972, 1126, 1222
BstHHI	GCGC	4 cut(s)	183, 405, 957, 1340
BstKTI	GATC	7 cut(s)	54, 97, 267, 382, 550, 910, 1031
BstMAI	GTCTC	2 cut(s)	549, 1235
BstMBI	GATC	7 cut(s)	51, 94, 264, 379, 547, 907, 1028
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 277, 305, 449, 811, 1346
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstV1I	GCAGC	3 cut(s)	628, 871, 907
BstV2I	GAAGAC	1 cut(s)	1287
BstX2I	RGATCY	2 cut(s)	379, 1028
BstYI	RGATCY	2 cut(s)	379, 1028
BsuRI	GGCC	2 cut(s)	373, 425
BtsCI	GGATG	4 cut(s)	208, 972, 1126, 1222
Cac8I	GCNNGC	5 cut(s)	39, 306, 467, 587, 772
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	4 cut(s)	183, 405, 957, 1340
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	217, 312
CviAII	CATG	7 cut(s)	92, 123, 277, 680, 694, 785, 795
CviQI	GTAC	2 cut(s)	217, 312
DdeI	CTNAG	5 cut(s)	291, 300, 389, 579, 1236
DpnI	GATC	7 cut(s)	53, 96, 266, 381, 549, 909, 1030
DpnII	GATC	7 cut(s)	51, 94, 264, 379, 547, 907, 1028
DraI	TTTAAA	1 cut(s)	154
Eam1104I	CTCTTC	3 cut(s)	39, 252, 1041
EarI	CTCTTC	3 cut(s)	39, 252, 1041
Eco130I	CCWWGG	2 cut(s)	198, 252
Eco147I	AGGCCT	1 cut(s)	373
Eco31I	GGTCTC	1 cut(s)	549
Eco57I	CTGAAG	4 cut(s)	63, 396, 641, 800
Eco72I	CACGTG	1 cut(s)	917
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	1124
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	198, 252
EcoT22I	ATGCAT	3 cut(s)	79, 282, 796
ErhI	CCWWGG	2 cut(s)	198, 252
FaeI	CATG	7 cut(s)	95, 126, 280, 683, 697, 788, 798
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	7 cut(s)	91, 122, 276, 679, 693, 784, 794
FbaI	TGATCA	3 cut(s)	51, 264, 907
Fnu4HI	GCNGC	3 cut(s)	617, 885, 921
FokI	GGATG	4 cut(s)	215, 979, 1133, 1229
Fsp4HI	GCNGC	3 cut(s)	617, 885, 921
FspBI	CTAG	3 cut(s)	606, 771, 1112
FspI	TGCGCA	2 cut(s)	182, 404
GlaI	GCGC	4 cut(s)	182, 404, 956, 1339
GluI	GCNGC	3 cut(s)	617, 885, 921
GsaI	CCCAGC	1 cut(s)	1163
HaeIII	GGCC	2 cut(s)	373, 425
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	4 cut(s)	183, 405, 957, 1340
Hin1II	CATG	7 cut(s)	95, 126, 280, 683, 697, 788, 798
Hin6I	GCGC	4 cut(s)	181, 403, 955, 1338
HinP1I	GCGC	4 cut(s)	181, 403, 955, 1338
HincII	GTYRAC	3 cut(s)	175, 233, 288
HindII	GTYRAC	3 cut(s)	175, 233, 288
HindIII	AAGCTT	2 cut(s)	823, 1347
HinfI	GANTC	3 cut(s)	211, 517, 1259
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	3 cut(s)	274, 1175, 1199
Hpy166II	GTNNAC	4 cut(s)	175, 233, 288, 733
Hpy188I	TCNGA	7 cut(s)	210, 534, 819, 846, 912, 1045, 1330
Hpy188III	TCNNGA	6 cut(s)	92, 514, 599, 992, 1026, 1112
Hpy8I	GTNNAC	4 cut(s)	175, 233, 288, 733
HpyAV	CCTTC	2 cut(s)	489, 841
HpyCH4III	ACNGT	2 cut(s)	594, 645
HpyCH4IV	ACGT	2 cut(s)	310, 916
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 277, 305, 449, 811, 1346
HpyF3I	CTNAG	5 cut(s)	291, 300, 389, 579, 1236
HpySE526I	ACGT	2 cut(s)	310, 916
Hsp92II	CATG	7 cut(s)	95, 126, 280, 683, 697, 788, 798
HspAI	GCGC	4 cut(s)	181, 403, 955, 1338
Ksp22I	TGATCA	3 cut(s)	51, 264, 907
Kzo9I	GATC	7 cut(s)	51, 94, 264, 379, 547, 907, 1028
LguI	GCTCTTC	1 cut(s)	1041
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	3 cut(s)	628, 871, 907
LweI	GCATC	3 cut(s)	64, 289, 875
MaeI	CTAG	3 cut(s)	606, 771, 1112
MaeII	ACGT	2 cut(s)	310, 916
MaeIII	GTNAC	1 cut(s)	1051
MalI	GATC	7 cut(s)	53, 96, 266, 381, 549, 909, 1030
MbiI	CCGCTC	1 cut(s)	663
MboI	GATC	7 cut(s)	51, 94, 264, 379, 547, 907, 1028
MflI	RGATCY	2 cut(s)	379, 1028
MluCI	AATT	8 cut(s)	7, 144, 753, 958, 978, 1124, 1153, 1173
MmeI	TCCRAC	1 cut(s)	399
Mph1103I	ATGCAT	3 cut(s)	79, 282, 796
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	9 cut(s)	153, 699, 780, 828, 839, 860, 987, 1088, 1268
MslI	CAYNNNNRTG	1 cut(s)	789
MspA1I	CMGCKG	1 cut(s)	619
MspCI	CTTAAG	1 cut(s)	838
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	6 cut(s)	11, 277, 305, 449, 811, 1346
NdeII	GATC	7 cut(s)	51, 94, 264, 379, 547, 907, 1028
NheI	GCTAGC	1 cut(s)	770
NlaIII	CATG	7 cut(s)	95, 126, 280, 683, 697, 788, 798
NsbI	TGCGCA	2 cut(s)	182, 404
NsiI	ATGCAT	3 cut(s)	79, 282, 796
NspV	TTCGAA	1 cut(s)	493
PagI	TCATGA	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	373
PciSI	GCTCTTC	1 cut(s)	1041
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	3 cut(s)	211, 517, 1259
PkrI	GCNGC	3 cut(s)	618, 886, 922
PmaCI	CACGTG	1 cut(s)	917
PmlI	CACGTG	1 cut(s)	917
Ppu21I	YACGTR	2 cut(s)	311, 917
Psp6I	CCWGG	1 cut(s)	315
PspCI	CACGTG	1 cut(s)	917
PspFI	CCCAGC	1 cut(s)	1159
PspGI	CCWGG	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	424
PsuI	RGATCY	2 cut(s)	379, 1028
PvuII	CAGCTG	1 cut(s)	619
RsaI	GTAC	2 cut(s)	218, 313
RsaNI	GTAC	2 cut(s)	217, 312
RseI	CAYNNNNRTG	1 cut(s)	789
SapI	GCTCTTC	1 cut(s)	1041
SaqAI	TTAA	9 cut(s)	153, 699, 780, 828, 839, 860, 987, 1088, 1268
SatI	GCNGC	3 cut(s)	617, 885, 921
Sau3AI	GATC	7 cut(s)	51, 94, 264, 379, 547, 907, 1028
Sau96I	GGNCC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	317
SfaNI	GCATC	3 cut(s)	64, 289, 875
SfuI	TTCGAA	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	789
SmlI	CTYRAG	2 cut(s)	321, 838
SmoI	CTYRAG	2 cut(s)	321, 838
Sse9I	AATT	8 cut(s)	7, 144, 753, 958, 978, 1124, 1153, 1173
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	2 cut(s)	220, 661
SspMI	CTAG	3 cut(s)	606, 771, 1112
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	2 cut(s)	198, 252
TaaI	ACNGT	2 cut(s)	594, 645
TaiI	ACGT	2 cut(s)	313, 919
TaqI	TCGA	4 cut(s)	357, 448, 493, 1005
TaqII	GACCGA	1 cut(s)	573
TasI	AATT	8 cut(s)	7, 144, 753, 958, 978, 1124, 1153, 1173
TfiI	GAWTC	3 cut(s)	211, 517, 1259
Tru1I	TTAA	9 cut(s)	153, 699, 780, 828, 839, 860, 987, 1088, 1268
Tru9I	TTAA	9 cut(s)	153, 699, 780, 828, 839, 860, 987, 1088, 1268
TseI	GCWGC	3 cut(s)	616, 884, 920
TspDTI	ATGAA	6 cut(s)	80, 265, 668, 1137, 1233, 1293
TspGWI	ACGGA	1 cut(s)	500
Vha464I	CTTAAG	1 cut(s)	838
XapI	RAATTY	3 cut(s)	7, 753, 1124
XbaI	TCTAGA	1 cut(s)	1111
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	3 cut(s)	606, 771, 1112
Zsp2I	ATGCAT	3 cut(s)	79, 282, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.