Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Reverse (-)

65515480 .. 65520205

Gene Structure 4726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG412500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGATTACTCTTCTTCTCTTCACATTTTCGTATAGTGCACTAAGCCGTTTAGTGTATCGGCTCGAGCCTAGCCTGTTGGTGGAAATTACGTTTCCGTCCTTATTTCCTGATCTTATTACATCAAAGAGATATAGAGCATGGCAGAAGCCACTTGAAAAAATTATGTTTAAATATGTGGAGCTTTGTGTTGACTTGCGCAAGGGTAGATTTGCCAAGGATGGTCTGATTCAGTACCGTATTATATGTCAACAAGTAAATGTCAGTTCCTTGGAACAGGTGATCAAGCACTTCATGCATCTGTCAACTGAGAAAGCTGAGCAGGCACGTACCCAGGCTCAAGCATTAGAAGAAGCACTTGATGTTGATGACCTCGAAGCAGATAAGAGGCCTGAAGATCTAATGCTGAGTTATGTCAGTGGAGAGAAAGGAAAAGATAGGTCTGATCGTGATGTTGTTACTCCTTGGTTCAAGTTTTTGTGGGAAACCTACAGAACAGTGCTTGAGATCTTGCGCAACAACTCAAAGTTGGAGGCCCTTTATGCGGTTCTCATTAATCAACTGAAGGAAGTTGCTCCAGCAATACAAAAGGAAATTGCGAAACATCTCTCTCTTCCTCCAGTCAAGCTACACTGCAGTATGCTTGCTGAGGATGCCATCAAGGCAGCTTGTAATTTGTCAAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

228

Amino Acids

26.32

Weight (kDa)

8.25

Isoelectric Point (pI)

30.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF3a_PCI_TPR-like	PF22591	37 - 186	6.4e-52	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	197, 512
AciI	CCGC	1 cut(s)	542
AcuI	CTGAAG	2 cut(s)	411, 581
AfaI	GTAC	2 cut(s)	233, 328
AfiI	CCNNNNNNNGG	2 cut(s)	79, 541
AgsI	TTSAA	2 cut(s)	155, 469
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	4 cut(s)	181, 314, 625, 665
AluI	AGCT	4 cut(s)	181, 314, 625, 665
Alw21I	GWGCWC	1 cut(s)	40
Alw44I	GTGCAC	1 cut(s)	36
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	2 cut(s)	386, 531
ApaLI	GTGCAC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	662
AseI	ATTAAT	1 cut(s)	552
AspLEI	GCGC	2 cut(s)	198, 513
AspS9I	GGNCC	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	40
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	1 cut(s)	674
BccI	CCATC	2 cut(s)	212, 662
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	332
BclI	TGATCA	1 cut(s)	279
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	2 cut(s)	487, 631
BglI	GCCNNNNNGGC	1 cut(s)	659
BglII	AGATCT	2 cut(s)	394, 504
BisI	GCNGC	1 cut(s)	663
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	664
Bme1390I	CCNGG	1 cut(s)	332
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	532
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	2 cut(s)	304, 640
BpmI	CTGGAG	2 cut(s)	558, 600
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu1102I	GCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	2 cut(s)	321, 521
BsaAI	YACGTR	1 cut(s)	326
BsaJI	CCNNGG	4 cut(s)	213, 267, 330, 461
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 541
Bse1I	ACTGG	1 cut(s)	617
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	4 cut(s)	213, 267, 330, 461
BseGI	GGATG	2 cut(s)	223, 655
BseLI	CCNNNNNNNGG	2 cut(s)	79, 541
BseMII	CTCAG	4 cut(s)	297, 306, 395, 636
BseNI	ACTGG	1 cut(s)	617
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	674
BshFI	GGCC	2 cut(s)	388, 533
BsiHKAI	GWGCWC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	79, 541
BsnI	GGCC	2 cut(s)	388, 533
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	5 cut(s)	109, 279, 394, 442, 504
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	1 cut(s)	542
BspANI	GGCC	2 cut(s)	388, 533
BspCNI	CTCAG	4 cut(s)	298, 307, 396, 637
BspMAI	CTGCAG	1 cut(s)	635
BsrI	ACTGG	1 cut(s)	617
BssECI	CCNNGG	4 cut(s)	213, 267, 330, 461
BssMI	GATC	5 cut(s)	109, 279, 394, 442, 504
BssT1I	CCWWGG	3 cut(s)	213, 267, 461
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	2 cut(s)	236, 496
Bst6I	CTCTTC	3 cut(s)	15, 23, 615
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstBAI	YACGTR	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	321, 642
BstDEI	CTNAG	5 cut(s)	41, 306, 315, 404, 645
BstF5I	GGATG	2 cut(s)	223, 655
BstHHI	GCGC	2 cut(s)	198, 513
BstKTI	GATC	5 cut(s)	112, 282, 397, 445, 507
BstMBI	GATC	5 cut(s)	109, 279, 394, 442, 504
BstMWI	GCNNNNNNNGC	5 cut(s)	292, 320, 539, 650, 659
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	2 cut(s)	487, 631
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	674
BstX2I	RGATCY	2 cut(s)	394, 504
BstYI	RGATCY	2 cut(s)	394, 504
BsuRI	GGCC	2 cut(s)	388, 533
BtsCI	GGATG	2 cut(s)	223, 655
BtsI	GCAGTG	1 cut(s)	628
BtsIMutI	CAGTG	3 cut(s)	421, 501, 628
Cac8I	GCNNGC	2 cut(s)	321, 642
CfoI	GCGC	2 cut(s)	198, 513
Cfr13I	GGNCC	1 cut(s)	532
Csp6I	GTAC	2 cut(s)	232, 327
CviAII	CATG	2 cut(s)	138, 292
CviQI	GTAC	2 cut(s)	232, 327
DdeI	CTNAG	5 cut(s)	41, 306, 315, 404, 645
DpnI	GATC	5 cut(s)	111, 281, 396, 444, 506
DpnII	GATC	5 cut(s)	109, 279, 394, 442, 504
DraI	TTTAAA	1 cut(s)	169
Eam1104I	CTCTTC	3 cut(s)	15, 23, 615
EarI	CTCTTC	3 cut(s)	15, 23, 615
Eco130I	CCWWGG	3 cut(s)	213, 267, 461
Eco147I	AGGCCT	1 cut(s)	388
Eco57I	CTGAAG	2 cut(s)	411, 581
Eco88I	CYCGRG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	3 cut(s)	213, 267, 461
EcoT22I	ATGCAT	1 cut(s)	297
ErhI	CCWWGG	3 cut(s)	213, 267, 461
FaeI	CATG	2 cut(s)	141, 295
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FatI	CATG	2 cut(s)	137, 291
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	663
FokI	GGATG	2 cut(s)	230, 662
Fsp4HI	GCNGC	1 cut(s)	663
FspBI	CTAG	1 cut(s)	69
FspI	TGCGCA	2 cut(s)	197, 512
GlaI	GCGC	2 cut(s)	197, 512
GluI	GCNGC	1 cut(s)	663
GsuI	CTGGAG	2 cut(s)	558, 600
HaeIII	GGCC	2 cut(s)	388, 533
HhaI	GCGC	2 cut(s)	198, 513
Hin1II	CATG	2 cut(s)	141, 295
Hin6I	GCGC	2 cut(s)	196, 511
HinP1I	GCGC	2 cut(s)	196, 511
HincII	GTYRAC	3 cut(s)	190, 248, 303
HindII	GTYRAC	3 cut(s)	190, 248, 303
HinfI	GANTC	1 cut(s)	226
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	4 cut(s)	38, 190, 248, 303
Hpy188I	TCNGA	2 cut(s)	225, 442
Hpy188III	TCNNGA	2 cut(s)	107, 446
Hpy8I	GTNNAC	4 cut(s)	38, 190, 248, 303
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	2 cut(s)	236, 496
HpyCH4IV	ACGT	2 cut(s)	89, 325
HpyCH4V	TGCA	3 cut(s)	38, 295, 633
HpyF10VI	GCNNNNNNNGC	5 cut(s)	292, 320, 539, 650, 659
HpyF3I	CTNAG	5 cut(s)	41, 306, 315, 404, 645
HpySE526I	ACGT	2 cut(s)	89, 325
Hsp92II	CATG	2 cut(s)	141, 295
HspAI	GCGC	2 cut(s)	196, 511
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	5 cut(s)	109, 279, 394, 442, 504
LmnI	GCTCC	2 cut(s)	178, 577
LpnPI	CCDG	9 cut(s)	86, 120, 260, 305, 317, 344, 402, 588, 630
Lsp1109I	GCAGC	1 cut(s)	674
LweI	GCATC	2 cut(s)	304, 640
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	2 cut(s)	89, 325
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	5 cut(s)	111, 281, 396, 444, 506
MboI	GATC	5 cut(s)	109, 279, 394, 442, 504
MboII	GAAGA	5 cut(s)	5, 10, 359, 404, 602
MflI	RGATCY	2 cut(s)	394, 504
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	4 cut(s)	84, 159, 591, 670
MmeI	TCCRAC	1 cut(s)	507
MnlI	CCTC	5 cut(s)	378, 380, 523, 624, 640
Mph1103I	ATGCAT	1 cut(s)	297
MseI	TTAA	2 cut(s)	168, 552
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	5 cut(s)	292, 320, 539, 650, 659
NdeII	GATC	5 cut(s)	109, 279, 394, 442, 504
NlaIII	CATG	2 cut(s)	141, 295
NsbI	TGCGCA	2 cut(s)	197, 512
NsiI	ATGCAT	1 cut(s)	297
PaeR7I	CTCGAG	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	664
Ppu21I	YACGTR	1 cut(s)	326
PshBI	ATTAAT	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	532
PspXI	VCTCGAGB	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	394, 504
RsaI	GTAC	2 cut(s)	233, 328
RsaNI	GTAC	2 cut(s)	232, 327
SaqAI	TTAA	2 cut(s)	168, 552
SatI	GCNGC	1 cut(s)	663
Sau3AI	GATC	5 cut(s)	109, 279, 394, 442, 504
Sau96I	GGNCC	1 cut(s)	532
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	2 cut(s)	304, 640
SfcI	CTRYAG	2 cut(s)	487, 631
Sfr274I	CTCGAG	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	62
SmlI	CTYRAG	3 cut(s)	62, 336, 500
SmoI	CTYRAG	3 cut(s)	62, 336, 500
Sse9I	AATT	4 cut(s)	84, 159, 591, 670
SseBI	AGGCCT	1 cut(s)	388
SsiI	CCGC	1 cut(s)	542
SspMI	CTAG	1 cut(s)	69
StuI	AGGCCT	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	3 cut(s)	213, 267, 461
TaaI	ACNGT	2 cut(s)	236, 496
TaiI	ACGT	2 cut(s)	92, 328
TaqI	TCGA	2 cut(s)	63, 372
TasI	AATT	4 cut(s)	84, 159, 591, 670
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	168, 552
Tru9I	TTAA	2 cut(s)	168, 552
TscAI	CASTG	3 cut(s)	421, 501, 635
TseI	GCWGC	1 cut(s)	662
TspDTI	ATGAA	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	3 cut(s)	421, 501, 635
VneI	GTGCAC	1 cut(s)	36
VspI	ATTAAT	1 cut(s)	552
XhoI	CTCGAG	1 cut(s)	62
XspI	CTAG	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.