Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Forward (+)

27384329 .. 27386614

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTGAATTTTGCGAAACCGGAAAATGCTTTGAAGCGAGGCGAAGGTCTCCAAAGGTGTCTTGAGCTGTGCAACCCGGAAGTAAAGGATCTCTTCCATCTCCTGGAGCATGAATTTCTACCTCTTGACCTTGCTGTAAAGATACAACCACTTGCAAGCTTGTCTCGATATGTTCTTGCACTTGAAAAGCTTGGTACTTTGAGGTTGCTCCAACGGCAAGAGCTGGAAAAATTACATGATCTTAGGAACAAAGTCAAGTTGGAAGGGGAACATTGGGATGACCTTGTATCTAGTTCGAGTCGGAATTCTCATTTAGTATCCAAGGCTACTCGTTTGTGGGAGTCGATATTAGCCCGTAAAAATTCATACTCGGTTAATCGGTTTGATCATTCAACTCAATCTCCATCACTTGTAGGTCAACATGAAGTTCTTGCTTCGGGCCCTATCGAGGATTTAATCGCTCATCGGGAGCATAGGTACCGCATTTACGGATCTTCTTTGCTTGCGGCTATGGATCGAGCTCTCGGGTTCCTTATGCGGATGTCTTATCTGTCCGGTCACAGTGATTTTACTCCTACACATGTGGATGATAAAGAGCAGATTGATGGTTCATATGTCAATATTAACGAGAGAAAAGATGAAGAATACTTTAGATTCATCCCATTCACAAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0051011 GO:0055046 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS6_N

Protein Analysis

225

Amino Acids

25.96

Weight (kDa)

6.6

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	477
AccB7I	CCANNNNNTGG	1 cut(s)	103
AciI	CCGC	3 cut(s)	481, 506, 538
AclWI	GGATC	3 cut(s)	96, 499, 522
AcsI	RAATTY	4 cut(s)	7, 113, 304, 361
AfaI	GTAC	2 cut(s)	196, 479
AfiI	CCNNNNNNNGG	2 cut(s)	103, 448
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	3 cut(s)	34, 185, 393
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	5 cut(s)	67, 159, 190, 223, 521
AluI	AGCT	5 cut(s)	67, 159, 190, 223, 521
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	2 cut(s)	53, 168
AlwI	GGATC	3 cut(s)	96, 499, 522
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	1 cut(s)	439
ApaI	GGGCCC	1 cut(s)	443
ApoI	RAATTY	4 cut(s)	7, 113, 304, 361
Asp718I	GGTACC	1 cut(s)	477
AspS9I	GGNCC	2 cut(s)	439, 440
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	477
BanII	GRGCYC	2 cut(s)	443, 523
Bbv12I	GWGCWC	1 cut(s)	523
BccI	CCATC	3 cut(s)	105, 412, 599
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	104
BciVI	GTATCC	1 cut(s)	328
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	53, 168
BfaI	CTAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	328
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
Bme1390I	CCNGG	2 cut(s)	77, 104
BmeT110I	CYCGRG	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	439, 440
BmiI	GGNNCC	3 cut(s)	441, 479, 530
BmrFI	CCNGG	2 cut(s)	77, 104
BpmI	CTGGAG	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	321
BsaWI	WCCGGW	2 cut(s)	19, 554
BsaXI	ACNNNNNCTCC	4 cut(s)	385, 415, 461, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 448
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	4 cut(s)	283, 546, 592, 657
BseLI	CCNNNNNNNGG	2 cut(s)	103, 448
BseSI	GKGCMC	1 cut(s)	443
BshFI	GGCC	1 cut(s)	441
BshNI	GGYRCC	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	3 cut(s)	20, 77, 555
BslI	CCNNNNNNNGG	2 cut(s)	103, 448
BsmAI	GTCTC	2 cut(s)	53, 168
BsnI	GGCC	1 cut(s)	441
Bso31I	GGTCTC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	524
Bsp120I	GGGCCC	1 cut(s)	439
Bsp1286I	GDGCHC	2 cut(s)	443, 523
Bsp143I	GATC	5 cut(s)	88, 238, 385, 491, 514
BspACI	CCGC	3 cut(s)	481, 506, 538
BspANI	GGCC	1 cut(s)	441
BspLI	GGNNCC	3 cut(s)	441, 479, 530
BspPI	GGATC	3 cut(s)	96, 499, 522
BspT107I	GGYRCC	1 cut(s)	477
BspTNI	GGTCTC	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	5 cut(s)	88, 238, 385, 491, 514
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	563
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	157, 504
BstDEI	CTNAG	1 cut(s)	242
BstF5I	GGATG	4 cut(s)	283, 546, 592, 657
BstKTI	GATC	5 cut(s)	91, 241, 388, 494, 517
BstMAI	GTCTC	2 cut(s)	53, 168
BstMBI	GATC	5 cut(s)	88, 238, 385, 491, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	2 cut(s)	75, 102
BstSLI	GKGCMC	1 cut(s)	443
BstX2I	RGATCY	2 cut(s)	88, 491
BstYI	RGATCY	2 cut(s)	88, 491
BsuI	GTATCC	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	441
BtsCI	GGATG	4 cut(s)	283, 546, 592, 657
BtsIMutI	CAGTG	1 cut(s)	568
Cac8I	GCNNGC	2 cut(s)	157, 504
Cfr13I	GGNCC	2 cut(s)	439, 440
Csp6I	GTAC	2 cut(s)	195, 478
CviAII	CATG	4 cut(s)	110, 236, 422, 581
CviJI	RGCY	9 cut(s)	67, 159, 190, 223, 326, 353, 441, 509, 521
CviKI_1	RGCY	9 cut(s)	67, 159, 190, 223, 326, 353, 441, 509, 521
CviQI	GTAC	2 cut(s)	195, 478
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	5 cut(s)	90, 240, 387, 493, 516
DpnII	GATC	5 cut(s)	88, 238, 385, 491, 514
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	2 cut(s)	443, 523
Eco31I	GGTCTC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	521
Eco88I	CYCGRG	1 cut(s)	524
EcoICRI	GAGCTC	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	2 cut(s)	443, 523
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	4 cut(s)	113, 239, 425, 584
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	4 cut(s)	109, 235, 421, 580
FauNDI	CATATG	1 cut(s)	613
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	4 cut(s)	290, 553, 599, 644
FriOI	GRGCYC	2 cut(s)	443, 523
Fsp4HI	GCNGC	1 cut(s)	507
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	3 cut(s)	20, 77, 555
Hin1II	CATG	4 cut(s)	113, 239, 425, 584
HincII	GTYRAC	1 cut(s)	419
HindII	GTYRAC	1 cut(s)	419
HindIII	AAGCTT	2 cut(s)	157, 188
HinfI	GANTC	3 cut(s)	298, 341, 654
HpaII	CCGG	3 cut(s)	20, 77, 555
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	4 cut(s)	62, 125, 165, 467
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	2 cut(s)	38, 257
HpyCH4III	ACNGT	1 cut(s)	563
HpyCH4V	TGCA	3 cut(s)	72, 155, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	1 cut(s)	242
Hsp92II	CATG	4 cut(s)	113, 239, 425, 584
KpnI	GGTACC	1 cut(s)	481
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	5 cut(s)	88, 238, 385, 491, 514
LmnI	GCTCC	3 cut(s)	106, 213, 469
LpnPI	CCDG	6 cut(s)	33, 89, 90, 116, 209, 568
MaeI	CTAG	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	5 cut(s)	90, 240, 387, 493, 516
MboI	GATC	5 cut(s)	88, 238, 385, 491, 514
MboII	GAAGA	3 cut(s)	85, 486, 653
MflI	RGATCY	2 cut(s)	88, 491
MhlI	GDGCHC	2 cut(s)	443, 523
MluCI	AATT	5 cut(s)	7, 113, 230, 304, 361
MlyI	GAGTC	2 cut(s)	307, 350
MmeI	TCCRAC	3 cut(s)	235, 240, 281
MnlI	CCTC	4 cut(s)	32, 132, 195, 442
MseI	TTAA	3 cut(s)	375, 455, 624
MslI	CAYNNNNRTG	2 cut(s)	276, 585
MspI	CCGG	3 cut(s)	20, 77, 555
MspR9I	CCNGG	2 cut(s)	77, 104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	214
NciI	CCSGG	1 cut(s)	77
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	5 cut(s)	88, 238, 385, 491, 514
NlaIII	CATG	4 cut(s)	113, 239, 425, 584
NlaIV	GGNNCC	3 cut(s)	441, 479, 530
NmuCI	GTSAC	1 cut(s)	557
NspI	RCATGY	1 cut(s)	584
PciI	ACATGT	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	654
PflMI	CCANNNNNTGG	1 cut(s)	103
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	508
PleI	GAGTC	2 cut(s)	306, 349
PpsI	GAGTC	2 cut(s)	306, 349
PscI	ACATGT	1 cut(s)	580
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	441, 479, 530
PspOMI	GGGCCC	1 cut(s)	439
PspPI	GGNCC	2 cut(s)	439, 440
PsuI	RGATCY	2 cut(s)	88, 491
RsaI	GTAC	2 cut(s)	196, 479
RsaNI	GTAC	2 cut(s)	195, 478
RseI	CAYNNNNRTG	2 cut(s)	276, 585
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	3 cut(s)	375, 455, 624
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	5 cut(s)	88, 238, 385, 491, 514
Sau96I	GGNCC	2 cut(s)	439, 440
SchI	GAGTC	2 cut(s)	307, 350
ScrFI	CCNGG	2 cut(s)	77, 104
SduI	GDGCHC	2 cut(s)	443, 523
SmiMI	CAYNNNNRTG	2 cut(s)	276, 585
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	5 cut(s)	7, 113, 230, 304, 361
SsiI	CCGC	3 cut(s)	481, 506, 538
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	2 cut(s)	75, 102
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	563
TaqI	TCGA	5 cut(s)	166, 296, 344, 447, 517
TasI	AATT	5 cut(s)	7, 113, 230, 304, 361
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	1 cut(s)	654
Tru1I	TTAA	3 cut(s)	375, 455, 624
Tru9I	TTAA	3 cut(s)	375, 455, 624
TscAI	CASTG	1 cut(s)	568
TseFI	GTSAC	1 cut(s)	557
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	6 cut(s)	126, 354, 438, 600, 646, 654
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	1 cut(s)	568
Van91I	CCANNNNNTGG	1 cut(s)	103
XapI	RAATTY	4 cut(s)	7, 113, 304, 361
XceI	RCATGY	1 cut(s)	584
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.