Rmu_sc0002607.1_g000004

RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002607.1
Physical Location & Seq
Reverse (-)
11574 .. 13617
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002607.1_g000004.1.cds

Sequence Viewer

Length: 1353 bp
atggttccttttgtcttgttattctttcagggtgtggagtcagatggatttcgtgatcacttgactaaatttgctgagtctttgaacaagaccagggctatggtctaccctcctccaaagaaagcatctagactaggtgaaattcttccttctttggcagagactgtagataaagaacataaaaggcttcttgctaggaaatcaatcattgagaaaaggaaggaagaacaggaacgtcaacttctggaaatggaacgtgaggaagagtcgaggaggctcaagcaactgaaaataactgaagaggcagaggcaaaaaggcttgccaccgagtctgagataaggaagaaacaaaggctcctgaaggaaatagaggaaaaagaacttgaagaagcacagcaactccttcaagatgtaagcaaaaagaagaagggaaagaagccacttttggatggggaaaaggtgaccaagcaaactttattggacatggccgtgcatgagcagatcaaggagagagaagaaagggagaagaaattaacaaaactttccaaaacaatggatcacttggaaagagctaaaagggaagagtctgctcctttgattgaagctgcatatcaacaacgtttagtggaagaaagggtgcttcatgaacgtgagcaacagctggaaattgagctgagccaacagcgccatgaaggagatgtcaaggagaagaataggctagtgcggatgttgaacaataagactatcttccaggaaagggttgtgcatcgaaggcatgcagagtttgaaaggcggagggcagagagagaagagcaaatcagtcgaatgattcaggccaggaaactggagagggaggcaatgaggaagaaaatattctatgtgagatctgaagaggaaaggctaaagaagctgcatgaagaagaggaagcccgcaagcgtgaagaagccgagcgaaggaggagagaagaagctgaacgcaaagcaaaattggatgagattgctgaaaagcagaggctaagggagagggaattggaggaaaaagccgaaaggcagaagagagaaatgcttgctaggccggccattgagcctcgtccggttgagcctgtagttcctgctcctgctgctcctattgctgtcgctgctgctgcacccaacgctcctggaaggtatgttcctaggcatcggcgacaagaagccgccccggctgcagaacctgatcgtaggggaatcaggcctgatgagcgcccagccctgtcaagtgataggtggcgtagtgatcgcagtgatgagcgaagaccaccagcctttggtgcgggttcaaaatcgacttggtcctcatccagaccgcgttga

Protein Analysis

450

Amino Acids

53.37

Weight (kDa)

9.71

Isoelectric Point (pI)

79.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1307
AccI GTMKAC 1 cut(s) 105
AccII CGCG 1 cut(s) 1348
AciI CCGC 6 cut(s) 724, 793, 931, 1197, 1313, 1346
AclI AACGTT 1 cut(s) 619
AclWI GGATC 1 cut(s) 564
AcoI YGGCCR 2 cut(s) 486, 1077
AcsI RAATTY 2 cut(s) 68, 141
AcuI CTGAAG 3 cut(s) 318, 380, 909
AfiI CCNNNNNNNGG 3 cut(s) 757, 954, 1307
AgsI TTSAA 7 cut(s) 85, 386, 407, 602, 733, 788, 1320
AjnI CCWGG 4 cut(s) 92, 750, 836, 1159
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AloI GAACNNNNNNTCC 2 cut(s) 1155, 1187
AluBI AGCT 6 cut(s) 572, 605, 661, 673, 910, 971
AluI AGCT 6 cut(s) 572, 605, 661, 673, 910, 971
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 564
AlwNI CAGNNNCTG 2 cut(s) 164, 1214
AoxI GGCC 5 cut(s) 486, 834, 1073, 1077, 1232
ApeKI GCWGC 7 cut(s) 605, 910, 1121, 1139, 1142, 1145, 1205
ApoI RAATTY 2 cut(s) 68, 141
Asp700I GAANNNNTTC 2 cut(s) 144, 872
AspA2I CCTAGG 1 cut(s) 1175
AspLEI GCGC 2 cut(s) 687, 1245
AspS9I GGNCC 1 cut(s) 1332
AsuC2I CCSGG 1 cut(s) 1202
AsuHPI GGTGA 2 cut(s) 149, 472
AvaII GGWCC 1 cut(s) 1332
AvrII CCTAGG 1 cut(s) 1175
BbsI GAAGAC 1 cut(s) 1300
BbvI GCAGC 7 cut(s) 592, 897, 1108, 1126, 1129, 1132, 1192
BccI CCATC 2 cut(s) 38, 443
BceAI ACGGC 1 cut(s) 473
BcgI CGANNNNNNTGC 2 cut(s) 803, 837
BciT130I CCWGG 4 cut(s) 94, 752, 838, 1161
BclI TGATCA 1 cut(s) 55
BcnI CCSGG 1 cut(s) 1202
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 6 cut(s) 129, 134, 195, 719, 1071, 1176
BfmI CTRYAG 3 cut(s) 165, 1104, 1206
BfoI RGCGCY 2 cut(s) 688, 1246
BglI GCCNNNNNGGC 1 cut(s) 1202
BglII AGATCT 1 cut(s) 884
BisI GCNGC 8 cut(s) 606, 911, 1122, 1140, 1143, 1146, 1197, 1206
BlnI CCTAGG 1 cut(s) 1175
BlpI GCTNAGC 1 cut(s) 674
BlsI GCNGC 8 cut(s) 607, 912, 1123, 1141, 1144, 1147, 1198, 1207
Bme1390I CCNGG 5 cut(s) 94, 752, 838, 1161, 1202
Bme18I GGWCC 1 cut(s) 1332
BmgT120I GGNCC 1 cut(s) 1332
BmiI GGNNCC 2 cut(s) 6, 356
BmrFI CCNGG 5 cut(s) 94, 752, 838, 1161, 1202
BmsI GCATC 3 cut(s) 134, 775, 1189
BpiI GAAGAC 1 cut(s) 1300
BpmI CTGGAG 1 cut(s) 866
Bpu10I CCTNAGC 1 cut(s) 1016
Bpu1102I GCTNAGC 1 cut(s) 674
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 1202
BsaJI CCNNGG 3 cut(s) 93, 1175, 1200
BsaWI WCCGGW 1 cut(s) 1093
BsaXI ACNNNNNCTCC 4 cut(s) 339, 369, 384, 414
Bsc4I CCNNNNNNNGG 3 cut(s) 757, 954, 1307
Bse118I RCCGGY 1 cut(s) 1075
Bse1I ACTGG 1 cut(s) 849
Bse3DI GCAATG 1 cut(s) 864
BseBI CCWGG 4 cut(s) 94, 752, 838, 1161
BseDI CCNNGG 3 cut(s) 93, 1175, 1200
BseGI GGATG 4 cut(s) 454, 732, 997, 1337
BseLI CCNNNNNNNGG 3 cut(s) 757, 954, 1307
BseMI GCAATG 1 cut(s) 864
BseMII CTCAG 3 cut(s) 66, 324, 665
BseNI ACTGG 1 cut(s) 849
BseRI GAGGAG 3 cut(s) 102, 286, 973
BseXI GCAGC 7 cut(s) 592, 897, 1108, 1126, 1129, 1132, 1192
BseYI CCCAGC 1 cut(s) 1246
BsgI GTGCAG 1 cut(s) 1131
Bsh1236I CGCG 1 cut(s) 1348
BshFI GGCC 5 cut(s) 488, 836, 1075, 1079, 1234
BsiSI CCGG 3 cut(s) 1076, 1094, 1202
BslI CCNNNNNNNGG 3 cut(s) 757, 954, 1307
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 5 cut(s) 488, 836, 1075, 1079, 1234
Bsp143I GATC 6 cut(s) 55, 501, 556, 884, 1216, 1276
Bsp1720I GCTNAGC 1 cut(s) 674
BspACI CCGC 6 cut(s) 724, 793, 931, 1197, 1313, 1346
BspANI GGCC 5 cut(s) 488, 836, 1075, 1079, 1234
BspCNI CTCAG 3 cut(s) 67, 325, 666
BspFNI CGCG 1 cut(s) 1348
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 2 cut(s) 6, 356
BspMAI CTGCAG 1 cut(s) 1210
BspPI GGATC 1 cut(s) 564
BspQI GCTCTTC 1 cut(s) 804
BsrDI GCAATG 1 cut(s) 864
BsrFI RCCGGY 1 cut(s) 1075
BsrI ACTGG 1 cut(s) 849
BssAI RCCGGY 1 cut(s) 1075
BssECI CCNNGG 3 cut(s) 93, 1175, 1200
BssMI GATC 6 cut(s) 55, 501, 556, 884, 1216, 1276
BssT1I CCWWGG 1 cut(s) 1175
Bst2UI CCWGG 4 cut(s) 94, 752, 838, 1161
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 7 cut(s) 258, 294, 576, 804, 885, 915, 1049
BstC8I GCNNGC 6 cut(s) 321, 777, 931, 935, 1068, 1077
BstDEI CTNAG 4 cut(s) 75, 333, 674, 1016
BstEII GGTNACC 1 cut(s) 460
BstF5I GGATG 4 cut(s) 454, 732, 997, 1337
BstFNI CGCG 1 cut(s) 1348
BstH2I RGCGCY 2 cut(s) 688, 1246
BstHHI GCGC 2 cut(s) 687, 1245
BstKTI GATC 6 cut(s) 58, 504, 559, 887, 1219, 1279
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 6 cut(s) 55, 501, 556, 884, 1216, 1276
BstNI CCWGG 4 cut(s) 94, 752, 838, 1161
BstNSI RCATGY 1 cut(s) 779
BstPI GGTNACC 1 cut(s) 460
BstSCI CCNGG 5 cut(s) 92, 750, 836, 1159, 1200
BstSFI CTRYAG 3 cut(s) 165, 1104, 1206
BstUI CGCG 1 cut(s) 1348
BstV1I GCAGC 7 cut(s) 592, 897, 1108, 1126, 1129, 1132, 1192
BstV2I GAAGAC 1 cut(s) 1300
BstX2I RGATCY 1 cut(s) 884
BstXI CCANNNNNNTGG 3 cut(s) 100, 553, 844
BstYI RGATCY 1 cut(s) 884
BsuRI GGCC 5 cut(s) 488, 836, 1075, 1079, 1234
BtsCI GGATG 4 cut(s) 454, 732, 997, 1337
BtsI GCAGTG 1 cut(s) 1288
BtsIMutI CAGTG 1 cut(s) 1288
Cac8I GCNNGC 6 cut(s) 321, 777, 931, 935, 1068, 1077
CaiI CAGNNNCTG 2 cut(s) 164, 1214
CciI TCATGA 1 cut(s) 643
CfoI GCGC 2 cut(s) 687, 1245
Cfr10I RCCGGY 1 cut(s) 1075
Cfr13I GGNCC 1 cut(s) 1332
CviAII CATG 6 cut(s) 484, 494, 644, 689, 776, 914
DdeI CTNAG 4 cut(s) 75, 333, 674, 1016
DpnI GATC 6 cut(s) 57, 503, 558, 886, 1218, 1278
DpnII GATC 6 cut(s) 55, 501, 556, 884, 1216, 1276
EaeI YGGCCR 2 cut(s) 486, 1077
Eam1104I CTCTTC 7 cut(s) 258, 294, 576, 804, 885, 915, 1049
EarI CTCTTC 7 cut(s) 258, 294, 576, 804, 885, 915, 1049
EciI GGCGGA 1 cut(s) 808
Eco130I CCWWGG 1 cut(s) 1175
Eco147I AGGCCT 1 cut(s) 1234
Eco47I GGWCC 1 cut(s) 1332
Eco57I CTGAAG 3 cut(s) 318, 380, 909
Eco91I GGTNACC 1 cut(s) 460
EcoO65I GGTNACC 1 cut(s) 460
EcoRII CCWGG 4 cut(s) 92, 750, 836, 1159
EcoT14I CCWWGG 1 cut(s) 1175
ErhI CCWWGG 1 cut(s) 1175
FaeI CATG 6 cut(s) 487, 497, 647, 692, 779, 917
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FatI CATG 6 cut(s) 483, 493, 643, 688, 775, 913
FauI CCCGC 2 cut(s) 938, 1306
FbaI TGATCA 1 cut(s) 55
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 8 cut(s) 606, 911, 1122, 1140, 1143, 1146, 1197, 1206
FokI GGATG 4 cut(s) 461, 739, 1004, 1324
FseI GGCCGGCC 1 cut(s) 1079
Fsp4HI GCNGC 8 cut(s) 606, 911, 1122, 1140, 1143, 1146, 1197, 1206
FspBI CTAG 6 cut(s) 129, 134, 195, 719, 1071, 1176
GlaI GCGC 2 cut(s) 686, 1244
GluI GCNGC 8 cut(s) 606, 911, 1122, 1140, 1143, 1146, 1197, 1206
GsaI CCCAGC 1 cut(s) 1250
GsuI CTGGAG 1 cut(s) 866
HaeII RGCGCY 2 cut(s) 688, 1246
HaeIII GGCC 5 cut(s) 488, 836, 1075, 1079, 1234
HapII CCGG 3 cut(s) 1076, 1094, 1202
HhaI GCGC 2 cut(s) 687, 1245
Hin1II CATG 6 cut(s) 487, 497, 647, 692, 779, 917
Hin6I GCGC 2 cut(s) 685, 1243
HinP1I GCGC 2 cut(s) 685, 1243
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HinfI GANTC 7 cut(s) 38, 77, 266, 329, 584, 829, 1227
HpaII CCGG 3 cut(s) 1076, 1094, 1202
HphI GGTGA 2 cut(s) 149, 472
Hpy166II GTNNAC 2 cut(s) 106, 239
Hpy188I TCNGA 3 cut(s) 43, 334, 889
Hpy188III TCNNGA 7 cut(s) 53, 129, 245, 358, 407, 644, 1341
Hpy8I GTNNAC 2 cut(s) 106, 239
HpyAV CCTTC 9 cut(s) 159, 214, 355, 413, 421, 686, 765, 948, 1158
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 4 cut(s) 235, 256, 619, 649
HpyCH4V TGCA 7 cut(s) 493, 608, 766, 779, 913, 1148, 1208
HpyF3I CTNAG 4 cut(s) 75, 333, 674, 1016
HpySE526I ACGT 4 cut(s) 235, 256, 619, 649
Hsp92II CATG 6 cut(s) 487, 497, 647, 692, 779, 917
HspAI GCGC 2 cut(s) 685, 1243
KroI GCCGGC 1 cut(s) 1075
KroNI GCCGGC 1 cut(s) 1077
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 6 cut(s) 55, 501, 556, 884, 1216, 1276
LguI GCTCTTC 1 cut(s) 804
LmnI GCTCC 5 cut(s) 360, 595, 1120, 1129, 1162
Lsp1109I GCAGC 7 cut(s) 592, 897, 1108, 1126, 1129, 1132, 1192
LweI GCATC 3 cut(s) 134, 775, 1189
MaeI CTAG 6 cut(s) 129, 134, 195, 719, 1071, 1176
MaeII ACGT 4 cut(s) 235, 256, 619, 649
MaeIII GTNAC 1 cut(s) 460
MalI GATC 6 cut(s) 57, 503, 558, 886, 1218, 1278
MboI GATC 6 cut(s) 55, 501, 556, 884, 1216, 1276
MflI RGATCY 1 cut(s) 884
MluCI AATT 6 cut(s) 68, 141, 530, 666, 986, 1028
MlyI GAGTC 5 cut(s) 47, 86, 275, 338, 593
MroNI GCCGGC 1 cut(s) 1075
MroXI GAANNNNTTC 2 cut(s) 144, 872
MseI TTAA 1 cut(s) 533
MslI CAYNNNNRTG 2 cut(s) 488, 648
MspA1I CMGCKG 1 cut(s) 661
MspI CCGG 3 cut(s) 1076, 1094, 1202
MspR9I CCNGG 5 cut(s) 94, 752, 838, 1161, 1202
MvaI CCWGG 4 cut(s) 94, 752, 838, 1161
MvnI CGCG 1 cut(s) 1348
NaeI GCCGGC 1 cut(s) 1077
NciI CCSGG 1 cut(s) 1202
NdeII GATC 6 cut(s) 55, 501, 556, 884, 1216, 1276
NgoMIV GCCGGC 1 cut(s) 1075
NlaIII CATG 6 cut(s) 487, 497, 647, 692, 779, 917
NlaIV GGNNCC 2 cut(s) 6, 356
NmeAIII GCCGAG 1 cut(s) 973
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 1 cut(s) 779
PaeI GCATGC 1 cut(s) 779
PagI TCATGA 1 cut(s) 643
PceI AGGCCT 1 cut(s) 1234
PciSI GCTCTTC 1 cut(s) 804
PdiI GCCGGC 1 cut(s) 1077
PdmI GAANNNNTTC 2 cut(s) 144, 872
PfeI GAWTC 2 cut(s) 829, 1227
PflFI GACNNNGTC 1 cut(s) 1330
PflMI CCANNNNNTGG 1 cut(s) 1307
PfoI TCCNGGA 2 cut(s) 750, 1159
PkrI GCNGC 8 cut(s) 607, 912, 1123, 1141, 1144, 1147, 1198, 1207
PleI GAGTC 5 cut(s) 46, 85, 274, 337, 592
PpsI GAGTC 5 cut(s) 46, 85, 274, 337, 592
Psp1406I AACGTT 1 cut(s) 619
Psp6I CCWGG 4 cut(s) 92, 750, 836, 1159
PspEI GGTNACC 1 cut(s) 460
PspFI CCCAGC 1 cut(s) 1246
PspGI CCWGG 4 cut(s) 92, 750, 836, 1159
PspN4I GGNNCC 2 cut(s) 6, 356
PspPI GGNCC 1 cut(s) 1332
PstI CTGCAG 1 cut(s) 1210
PstNI CAGNNNCTG 2 cut(s) 164, 1214
PsuI RGATCY 1 cut(s) 884
PsyI GACNNNGTC 1 cut(s) 1330
PvuII CAGCTG 1 cut(s) 661
RigI GGCCGGCC 1 cut(s) 1079
RseI CAYNNNNRTG 2 cut(s) 488, 648
SapI GCTCTTC 1 cut(s) 804
SaqAI TTAA 1 cut(s) 533
SatI GCNGC 8 cut(s) 606, 911, 1122, 1140, 1143, 1146, 1197, 1206
Sau3AI GATC 6 cut(s) 55, 501, 556, 884, 1216, 1276
Sau96I GGNCC 1 cut(s) 1332
SchI GAGTC 5 cut(s) 47, 86, 275, 338, 593
ScrFI CCNGG 5 cut(s) 94, 752, 838, 1161, 1202
SfaNI GCATC 3 cut(s) 134, 775, 1189
SfcI CTRYAG 3 cut(s) 165, 1104, 1206
SinI GGWCC 1 cut(s) 1332
SmiMI CAYNNNNRTG 2 cut(s) 488, 648
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SphI GCATGC 1 cut(s) 779
Sse9I AATT 6 cut(s) 68, 141, 530, 666, 986, 1028
SseBI AGGCCT 1 cut(s) 1234
SsiI CCGC 6 cut(s) 724, 793, 931, 1197, 1313, 1346
SspI AATATT 1 cut(s) 873
SspMI CTAG 6 cut(s) 129, 134, 195, 719, 1071, 1176
StuI AGGCCT 1 cut(s) 1234
StyD4I CCNGG 5 cut(s) 92, 750, 836, 1159, 1200
StyI CCWWGG 1 cut(s) 1175
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 4 cut(s) 238, 259, 622, 652
TaqI TCGA 4 cut(s) 269, 769, 823, 1325
TasI AATT 6 cut(s) 68, 141, 530, 666, 986, 1028
TauI GCSGC 1 cut(s) 1199
TfiI GAWTC 2 cut(s) 829, 1227
Tru1I TTAA 1 cut(s) 533
Tru9I TTAA 1 cut(s) 533
TscAI CASTG 1 cut(s) 1288
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 7 cut(s) 605, 910, 1121, 1139, 1142, 1145, 1205
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 4 cut(s) 632, 660, 705, 930
TspRI CASTG 1 cut(s) 1288
Tth111I GACNNNGTC 1 cut(s) 1330
Van91I CCANNNNNTGG 1 cut(s) 1307
VpaK11BI GGWCC 1 cut(s) 1332
XapI RAATTY 2 cut(s) 68, 141
XbaI TCTAGA 1 cut(s) 128
XceI RCATGY 1 cut(s) 779
XmaJI CCTAGG 1 cut(s) 1175
XmiI GTMKAC 1 cut(s) 105
XmnI GAANNNNTTC 2 cut(s) 144, 872
XspI CTAG 6 cut(s) 129, 134, 195, 719, 1071, 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.