Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Forward (+)

17206301 .. 17212463

Gene Structure 6163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG110500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTAGCCAGCATCGCCCGACGGACCACCTCCTTGGAGATCCACAGCTTTGTGTTGACTTGCGCAAGGGTAGATTTGCCAAGGATGGTCTGATTCAGTACCGTATTATATGTCAACAAGTAAATGTCTGTTCCTTGGAAGAGGTGATCAAGCACTTCATGCATCTGTCAACTGAGAAAGCTGAGCAGGCACGTACCCAGGCTCAAGCATTAGAAGAAGCACTTGATGTTGATGACCTCGAAGCAGATAAGAGGCCTGAAGATCTAATGCTGAGTTATGTCAGTGGAGAGAAAGGAAAAGATAGGTCTGATCGTGAAGTTGTTACTCCTTGGTTCAAGTTTTTGTGGGAAACCTACAGAACAATGCTTGAGATCTTGCGCAACAACTCAAAGTTGGAGGCCCTTTATGTGATGACGACACATCGAGCCTTTCAGTTCTGCAAGCAATACAAACGAACTACGGAGTTTCGAAGGTTATGTGAAATCATCAGGAATCATCTGGCTAATCTGAACAAGTATAGAGATCAAAGAGACCGACCTGACCTATCTGCACCTGAGAGCTTGCAACTGTATCTTGATACTAGATTTGAGCAGCTGAAGATAGCTACTGAACTTGAACTGTGGCAGGAAGCGTTCCGCTCTGTTGAAGATATTCATGGATTGATGTGCATGGTTAAGAAAACCCCTAAACCATCGTTGATGGTGGTTTACTATGCGAAGCTCATAGAAATTTTTTGGATTTCTGCTAGCCACCTTAATCATGCTTATGCATGGTTCAAGCTATTCTCGCTTCAGAAAAGCTTTAACAAAAACTTAAGCCAGAAGGATTTGCAGTTAATAGCATCATCTGTTGTCTTGGCTGCACTTTCAGTTCCCCCTATGATCAGACACGTGCTGCCTCTCACTTGGAACTTGAAAATGAGAAAGAGCGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

312

Amino Acids

36.64

Weight (kDa)

8.89

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF3a_PCI_TPR-like	PF22591	16 - 293	1.9e-106	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	65, 380
AccBSI	CCGCTC	1 cut(s)	639
AciI	CCGC	1 cut(s)	637
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	729
AcuI	CTGAAG	3 cut(s)	279, 617, 776
AcvI	CACGTG	1 cut(s)	892
AfaI	GTAC	2 cut(s)	101, 196
AflII	CTTAAG	1 cut(s)	814
AflIII	ACRYGT	1 cut(s)	889
AgsI	TTSAA	5 cut(s)	337, 617, 647, 778, 916
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	8 cut(s)	49, 182, 561, 595, 605, 721, 781, 801
AluI	AGCT	8 cut(s)	49, 182, 561, 595, 605, 721, 781, 801
Alw26I	GTCTC	1 cut(s)	525
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	2 cut(s)	254, 399
ApeKI	GCWGC	3 cut(s)	592, 860, 895
ApoI	RAATTY	1 cut(s)	729
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	3 cut(s)	66, 381, 932
AspS9I	GGNCC	2 cut(s)	25, 400
AsuHPI	GGTGA	1 cut(s)	157
AsuII	TTCGAA	1 cut(s)	469
AsuNHI	GCTAGC	2 cut(s)	5, 746
AvaII	GGWCC	1 cut(s)	25
BbrPI	CACGTG	1 cut(s)	892
BbvI	GCAGC	3 cut(s)	604, 847, 882
BccI	CCATC	3 cut(s)	80, 694, 700
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	2 cut(s)	147, 882
BcoDI	GTCTC	1 cut(s)	525
BfaI	CTAG	3 cut(s)	6, 582, 747
BfmI	CTRYAG	1 cut(s)	355
BfrI	CTTAAG	1 cut(s)	814
BglII	AGATCT	2 cut(s)	262, 372
BisI	GCNGC	3 cut(s)	593, 861, 896
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	3 cut(s)	594, 862, 897
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	25, 400
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	3 cut(s)	22, 172, 851
BmtI	GCTAGC	2 cut(s)	9, 750
Bpu1102I	GCTNAGC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	469
BpuEI	CTTGAG	2 cut(s)	189, 389
BsaAI	YACGTR	2 cut(s)	194, 892
BsaI	GGTCTC	1 cut(s)	525
BsaJI	CCNNGG	5 cut(s)	34, 81, 135, 198, 329
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	5 cut(s)	34, 81, 135, 198, 329
BseGI	GGATG	1 cut(s)	91
BseMII	CTCAG	4 cut(s)	165, 174, 263, 546
BseXI	GCAGC	3 cut(s)	604, 847, 882
BsgI	GTGCAG	2 cut(s)	534, 846
BshFI	GGCC	2 cut(s)	256, 401
BsmAI	GTCTC	1 cut(s)	525
BsnI	GGCC	2 cut(s)	256, 401
Bso31I	GGTCTC	1 cut(s)	525
Bsp119I	TTCGAA	1 cut(s)	469
Bsp143I	GATC	7 cut(s)	40, 147, 262, 310, 372, 523, 882
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	637
BspANI	GGCC	2 cut(s)	256, 401
BspCNI	CTCAG	4 cut(s)	166, 175, 264, 547
BspOI	GCTAGC	2 cut(s)	9, 750
BspPI	GGATC	1 cut(s)	35
BspT104I	TTCGAA	1 cut(s)	469
BspTI	CTTAAG	1 cut(s)	814
BspTNI	GGTCTC	1 cut(s)	525
BsrBI	CCGCTC	1 cut(s)	639
BssECI	CCNNGG	5 cut(s)	34, 81, 135, 198, 329
BssMI	GATC	7 cut(s)	40, 147, 262, 310, 372, 523, 882
BssT1I	CCWWGG	4 cut(s)	34, 81, 135, 329
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	3 cut(s)	104, 570, 621
Bst6I	CTCTTC	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	814
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstBAI	YACGTR	2 cut(s)	194, 892
BstBI	TTCGAA	1 cut(s)	469
BstC8I	GCNNGC	6 cut(s)	7, 11, 189, 443, 563, 748
BstDEI	CTNAG	4 cut(s)	174, 183, 272, 555
BstF5I	GGATG	1 cut(s)	91
BstHHI	GCGC	3 cut(s)	66, 381, 932
BstKTI	GATC	7 cut(s)	43, 150, 265, 313, 375, 526, 885
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	7 cut(s)	40, 147, 262, 310, 372, 523, 882
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 160, 188, 787
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	3 cut(s)	604, 847, 882
BstX2I	RGATCY	3 cut(s)	40, 262, 372
BstXI	CCANNNNNNTGG	1 cut(s)	35
BstYI	RGATCY	3 cut(s)	40, 262, 372
BsuRI	GGCC	2 cut(s)	256, 401
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	6 cut(s)	7, 11, 189, 443, 563, 748
CfoI	GCGC	3 cut(s)	66, 381, 932
Cfr13I	GGNCC	2 cut(s)	25, 400
Csp6I	GTAC	2 cut(s)	100, 195
CviAII	CATG	5 cut(s)	160, 656, 670, 761, 771
CviQI	GTAC	2 cut(s)	100, 195
DdeI	CTNAG	4 cut(s)	174, 183, 272, 555
DpnI	GATC	7 cut(s)	42, 149, 264, 312, 374, 525, 884
DpnII	GATC	7 cut(s)	40, 147, 262, 310, 372, 523, 882
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	4 cut(s)	34, 81, 135, 329
Eco147I	AGGCCT	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	25
Eco57I	CTGAAG	3 cut(s)	279, 617, 776
Eco72I	CACGTG	1 cut(s)	892
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	4 cut(s)	34, 81, 135, 329
EcoT22I	ATGCAT	2 cut(s)	165, 772
ErhI	CCWWGG	4 cut(s)	34, 81, 135, 329
FaeI	CATG	5 cut(s)	163, 659, 673, 764, 774
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	5 cut(s)	159, 655, 669, 760, 770
FbaI	TGATCA	2 cut(s)	147, 882
Fnu4HI	GCNGC	3 cut(s)	593, 861, 896
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	3 cut(s)	593, 861, 896
FspBI	CTAG	3 cut(s)	6, 582, 747
FspI	TGCGCA	2 cut(s)	65, 380
GlaI	GCGC	3 cut(s)	65, 380, 931
GluI	GCNGC	3 cut(s)	593, 861, 896
HaeIII	GGCC	2 cut(s)	256, 401
HhaI	GCGC	3 cut(s)	66, 381, 932
Hin1II	CATG	5 cut(s)	163, 659, 673, 764, 774
Hin6I	GCGC	3 cut(s)	64, 379, 930
HinP1I	GCGC	3 cut(s)	64, 379, 930
HincII	GTYRAC	3 cut(s)	58, 116, 171
HindII	GTYRAC	3 cut(s)	58, 116, 171
HindIII	AAGCTT	1 cut(s)	799
HinfI	GANTC	2 cut(s)	94, 493
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	4 cut(s)	58, 116, 171, 709
Hpy188I	TCNGA	5 cut(s)	93, 310, 510, 795, 887
Hpy188III	TCNNGA	3 cut(s)	314, 490, 575
Hpy8I	GTNNAC	4 cut(s)	58, 116, 171, 709
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	465, 817
HpyCH4III	ACNGT	3 cut(s)	104, 570, 621
HpyCH4IV	ACGT	2 cut(s)	193, 891
HpyCH4V	TGCA	8 cut(s)	163, 441, 551, 565, 669, 770, 832, 863
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 160, 188, 787
HpyF3I	CTNAG	4 cut(s)	174, 183, 272, 555
HpySE526I	ACGT	2 cut(s)	193, 891
Hsp92II	CATG	5 cut(s)	163, 659, 673, 764, 774
HspAI	GCGC	3 cut(s)	64, 379, 930
Ksp22I	TGATCA	2 cut(s)	147, 882
Kzo9I	GATC	7 cut(s)	40, 147, 262, 310, 372, 523, 882
Lsp1109I	GCAGC	3 cut(s)	604, 847, 882
LweI	GCATC	3 cut(s)	22, 172, 851
MaeI	CTAG	3 cut(s)	6, 582, 747
MaeII	ACGT	2 cut(s)	193, 891
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	7 cut(s)	42, 149, 264, 312, 374, 525, 884
MbiI	CCGCTC	1 cut(s)	639
MboI	GATC	7 cut(s)	40, 147, 262, 310, 372, 523, 882
MboII	GAAGA	5 cut(s)	152, 227, 272, 610, 659
MflI	RGATCY	3 cut(s)	40, 262, 372
MluCI	AATT	2 cut(s)	729, 933
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	6 cut(s)	41, 136, 246, 248, 391, 909
Mph1103I	ATGCAT	2 cut(s)	165, 772
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	5 cut(s)	675, 756, 804, 815, 836
MslI	CAYNNNNRTG	1 cut(s)	765
MspA1I	CMGCKG	1 cut(s)	595
MspCI	CTTAAG	1 cut(s)	814
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	4 cut(s)	15, 160, 188, 787
NdeII	GATC	7 cut(s)	40, 147, 262, 310, 372, 523, 882
NheI	GCTAGC	2 cut(s)	5, 746
NlaIII	CATG	5 cut(s)	163, 659, 673, 764, 774
NsbI	TGCGCA	2 cut(s)	65, 380
NsiI	ATGCAT	2 cut(s)	165, 772
NspV	TTCGAA	1 cut(s)	469
PceI	AGGCCT	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	2 cut(s)	94, 493
PkrI	GCNGC	3 cut(s)	594, 862, 897
PmaCI	CACGTG	1 cut(s)	892
PmlI	CACGTG	1 cut(s)	892
Ppu21I	YACGTR	2 cut(s)	194, 892
Psp6I	CCWGG	1 cut(s)	198
PspCI	CACGTG	1 cut(s)	892
PspGI	CCWGG	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	25, 400
PsuI	RGATCY	3 cut(s)	40, 262, 372
PvuII	CAGCTG	1 cut(s)	595
RsaI	GTAC	2 cut(s)	101, 196
RsaNI	GTAC	2 cut(s)	100, 195
RseI	CAYNNNNRTG	1 cut(s)	765
SaqAI	TTAA	5 cut(s)	675, 756, 804, 815, 836
SatI	GCNGC	3 cut(s)	593, 861, 896
Sau3AI	GATC	7 cut(s)	40, 147, 262, 310, 372, 523, 882
Sau96I	GGNCC	2 cut(s)	25, 400
ScrFI	CCNGG	1 cut(s)	200
SfaNI	GCATC	3 cut(s)	22, 172, 851
SfcI	CTRYAG	1 cut(s)	355
SfuI	TTCGAA	1 cut(s)	469
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	3 cut(s)	204, 368, 814
SmoI	CTYRAG	3 cut(s)	204, 368, 814
Sse9I	AATT	2 cut(s)	729, 933
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	1 cut(s)	637
SspMI	CTAG	3 cut(s)	6, 582, 747
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	4 cut(s)	34, 81, 135, 329
TaaI	ACNGT	3 cut(s)	104, 570, 621
TaiI	ACGT	2 cut(s)	196, 894
TaqI	TCGA	3 cut(s)	240, 424, 469
TaqII	GACCGA	1 cut(s)	549
TasI	AATT	2 cut(s)	729, 933
TfiI	GAWTC	2 cut(s)	94, 493
Tru1I	TTAA	5 cut(s)	675, 756, 804, 815, 836
Tru9I	TTAA	5 cut(s)	675, 756, 804, 815, 836
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	3 cut(s)	592, 860, 895
TspDTI	ATGAA	2 cut(s)	148, 644
TspGWI	ACGGA	2 cut(s)	38, 476
TspRI	CASTG	1 cut(s)	289
Vha464I	CTTAAG	1 cut(s)	814
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	729
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	3 cut(s)	6, 582, 747
Zsp2I	ATGCAT	2 cut(s)	165, 772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.