RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| eIF3a_PCI_TPR-like | PF22591 | 67 - 239 | 7e-59 | eIF3a, PCI domain, TPR-like region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 3 cut(s) | 338, 653, 1023 |
| AciI | CCGC | 2 cut(s) | 124, 198 |
| AcoI | YGGCCR | 2 cut(s) | 72, 1219 |
| AcsI | RAATTY | 1 cut(s) | 1008 |
| AcuI | CTGAAG | 2 cut(s) | 552, 1142 |
| AcvI | CACGTG | 1 cut(s) | 689 |
| AfaI | GTAC | 2 cut(s) | 374, 469 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 57, 113, 114, 143 |
| AflIII | ACRYGT | 1 cut(s) | 686 |
| AgsI | TTSAA | 6 cut(s) | 194, 296, 610, 713, 798, 1038 |
| AjiI | CACGTC | 1 cut(s) | 913 |
| AjnI | CCWGG | 3 cut(s) | 108, 471, 1216 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 26, 58 |
| AluBI | AGCT | 7 cut(s) | 154, 322, 455, 986, 1061, 1073, 1098 |
| AluI | AGCT | 7 cut(s) | 154, 322, 455, 986, 1061, 1073, 1098 |
| Alw26I | GTCTC | 1 cut(s) | 829 |
| AoxI | GGCC | 7 cut(s) | 3, 59, 72, 184, 527, 672, 1219 |
| ApeKI | GCWGC | 4 cut(s) | 151, 692, 1061, 1084 |
| ApoI | RAATTY | 1 cut(s) | 1008 |
| AseI | ATTAAT | 1 cut(s) | 1113 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 864 |
| AspLEI | GCGC | 4 cut(s) | 339, 654, 729, 1024 |
| AspS9I | GGNCC | 3 cut(s) | 185, 673, 1001 |
| AsuC2I | CCSGG | 1 cut(s) | 71 |
| AsuHPI | GGTGA | 1 cut(s) | 430 |
| AvaII | GGWCC | 1 cut(s) | 1001 |
| BalI | TGGCCA | 1 cut(s) | 1221 |
| BbrPI | CACGTG | 1 cut(s) | 689 |
| BbvI | GCAGC | 4 cut(s) | 163, 679, 1048, 1096 |
| BccI | CCATC | 3 cut(s) | 353, 733, 1219 |
| BceAI | ACGGC | 1 cut(s) | 52 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 222, 256 |
| BciT130I | CCWGG | 3 cut(s) | 110, 473, 1218 |
| BclI | TGATCA | 2 cut(s) | 207, 420 |
| BcnI | CCSGG | 1 cut(s) | 71 |
| BcoDI | GTCTC | 1 cut(s) | 829 |
| BfaI | CTAG | 1 cut(s) | 1070 |
| BfmI | CTRYAG | 1 cut(s) | 628 |
| BglII | AGATCT | 3 cut(s) | 535, 645, 800 |
| BisI | GCNGC | 4 cut(s) | 152, 693, 1062, 1085 |
| BlpI | GCTNAGC | 1 cut(s) | 456 |
| BlsI | GCNGC | 4 cut(s) | 153, 694, 1063, 1086 |
| Bme1390I | CCNGG | 4 cut(s) | 71, 110, 473, 1218 |
| Bme18I | GGWCC | 1 cut(s) | 1001 |
| BmgBI | CACGTC | 1 cut(s) | 913 |
| BmgT120I | GGNCC | 3 cut(s) | 185, 673, 1001 |
| BmiI | GGNNCC | 2 cut(s) | 91, 1002 |
| BmrFI | CCNGG | 4 cut(s) | 71, 110, 473, 1218 |
| BmsI | GCATC | 3 cut(s) | 220, 445, 1222 |
| BpmI | CTGGAG | 1 cut(s) | 1119 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 456 |
| BpuEI | CTTGAG | 2 cut(s) | 462, 662 |
| BpuMI | CCSGG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 2 cut(s) | 467, 689 |
| BsaI | GGTCTC | 1 cut(s) | 829 |
| BsaJI | CCNNGG | 7 cut(s) | 69, 108, 181, 354, 408, 471, 602 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 57, 113, 114, 143 |
| Bse1I | ACTGG | 1 cut(s) | 825 |
| Bse3DI | GCAATG | 2 cut(s) | 62, 233 |
| BseBI | CCWGG | 3 cut(s) | 110, 473, 1218 |
| BseDI | CCNNGG | 7 cut(s) | 69, 108, 181, 354, 408, 471, 602 |
| BseGI | GGATG | 5 cut(s) | 165, 364, 744, 836, 1213 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 57, 113, 114, 143 |
| BseMI | GCAATG | 2 cut(s) | 62, 233 |
| BseMII | CTCAG | 3 cut(s) | 438, 447, 536 |
| BseNI | ACTGG | 1 cut(s) | 825 |
| BseRI | GAGGAG | 3 cut(s) | 54, 146, 798 |
| BseXI | GCAGC | 4 cut(s) | 163, 679, 1048, 1096 |
| BseYI | CCCAGC | 1 cut(s) | 51 |
| BshFI | GGCC | 7 cut(s) | 5, 61, 74, 186, 529, 674, 1221 |
| BsiSI | CCGG | 1 cut(s) | 71 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 57, 113, 114, 143 |
| BsmAI | GTCTC | 1 cut(s) | 829 |
| BsnI | GGCC | 7 cut(s) | 5, 61, 74, 186, 529, 674, 1221 |
| Bso31I | GGTCTC | 1 cut(s) | 829 |
| Bsp143I | GATC | 7 cut(s) | 207, 250, 420, 535, 583, 645, 800 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 456 |
| BspACI | CCGC | 2 cut(s) | 124, 198 |
| BspANI | GGCC | 7 cut(s) | 5, 61, 74, 186, 529, 674, 1221 |
| BspCNI | CTCAG | 3 cut(s) | 439, 448, 537 |
| BspHI | TCATGA | 1 cut(s) | 247 |
| BspLI | GGNNCC | 2 cut(s) | 91, 1002 |
| BspQI | GCTCTTC | 1 cut(s) | 813 |
| BspTNI | GGTCTC | 1 cut(s) | 829 |
| BsrDI | GCAATG | 2 cut(s) | 62, 233 |
| BsrI | ACTGG | 1 cut(s) | 825 |
| BssECI | CCNNGG | 7 cut(s) | 69, 108, 181, 354, 408, 471, 602 |
| BssMI | GATC | 7 cut(s) | 207, 250, 420, 535, 583, 645, 800 |
| BssT1I | CCWWGG | 3 cut(s) | 354, 408, 602 |
| Bst2UI | CCWGG | 3 cut(s) | 110, 473, 1218 |
| Bst4CI | ACNGT | 4 cut(s) | 377, 637, 907, 966 |
| Bst6I | CTCTTC | 5 cut(s) | 178, 408, 813, 870, 886 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 433 |
| BstBAI | YACGTR | 2 cut(s) | 467, 689 |
| BstC8I | GCNNGC | 2 cut(s) | 149, 462 |
| BstDEI | CTNAG | 5 cut(s) | 447, 456, 545, 1013, 1209 |
| BstDSI | CCRYGG | 1 cut(s) | 181 |
| BstF5I | GGATG | 5 cut(s) | 165, 364, 744, 836, 1213 |
| BstHHI | GCGC | 4 cut(s) | 339, 654, 729, 1024 |
| BstKTI | GATC | 7 cut(s) | 210, 253, 423, 538, 586, 648, 803 |
| BstMAI | GTCTC | 1 cut(s) | 829 |
| BstMBI | GATC | 7 cut(s) | 207, 250, 420, 535, 583, 645, 800 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 433, 461, 680, 689, 1070 |
| BstNI | CCWGG | 3 cut(s) | 110, 473, 1218 |
| BstSCI | CCNGG | 4 cut(s) | 69, 108, 471, 1216 |
| BstSFI | CTRYAG | 1 cut(s) | 628 |
| BstV1I | GCAGC | 4 cut(s) | 163, 679, 1048, 1096 |
| BstX2I | RGATCY | 3 cut(s) | 535, 645, 800 |
| BstYI | RGATCY | 3 cut(s) | 535, 645, 800 |
| BsuRI | GGCC | 7 cut(s) | 5, 61, 74, 186, 529, 674, 1221 |
| BtgI | CCRYGG | 1 cut(s) | 181 |
| BtrI | CACGTC | 1 cut(s) | 913 |
| BtsCI | GGATG | 5 cut(s) | 165, 364, 744, 836, 1213 |
| BtsIMutI | CAGTG | 2 cut(s) | 562, 642 |
| Cac8I | GCNNGC | 2 cut(s) | 149, 462 |
| CciI | TCATGA | 1 cut(s) | 247 |
| CfoI | GCGC | 4 cut(s) | 339, 654, 729, 1024 |
| Cfr13I | GGNCC | 3 cut(s) | 185, 673, 1001 |
| Csp6I | GTAC | 2 cut(s) | 373, 468 |
| CviAII | CATG | 5 cut(s) | 248, 279, 433, 1025, 1046 |
| CviQI | GTAC | 2 cut(s) | 373, 468 |
| DdeI | CTNAG | 5 cut(s) | 447, 456, 545, 1013, 1209 |
| DpnI | GATC | 7 cut(s) | 209, 252, 422, 537, 585, 647, 802 |
| DpnII | GATC | 7 cut(s) | 207, 250, 420, 535, 583, 645, 800 |
| DraI | TTTAAA | 1 cut(s) | 310 |
| EaeI | YGGCCR | 2 cut(s) | 72, 1219 |
| Eam1104I | CTCTTC | 5 cut(s) | 178, 408, 813, 870, 886 |
| EarI | CTCTTC | 5 cut(s) | 178, 408, 813, 870, 886 |
| EciI | GGCGGA | 2 cut(s) | 113, 187 |
| Eco130I | CCWWGG | 3 cut(s) | 354, 408, 602 |
| Eco147I | AGGCCT | 1 cut(s) | 529 |
| Eco31I | GGTCTC | 1 cut(s) | 829 |
| Eco47I | GGWCC | 1 cut(s) | 1001 |
| Eco57I | CTGAAG | 2 cut(s) | 552, 1142 |
| Eco72I | CACGTG | 1 cut(s) | 689 |
| EcoO109I | RGGNCCY | 1 cut(s) | 673 |
| EcoRII | CCWGG | 3 cut(s) | 108, 471, 1216 |
| EcoT14I | CCWWGG | 3 cut(s) | 354, 408, 602 |
| EcoT22I | ATGCAT | 2 cut(s) | 235, 438 |
| ErhI | CCWWGG | 3 cut(s) | 354, 408, 602 |
| FaeI | CATG | 5 cut(s) | 251, 282, 436, 1028, 1049 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 480, 512 |
| FatI | CATG | 5 cut(s) | 247, 278, 432, 1024, 1045 |
| FauNDI | CATATG | 1 cut(s) | 975 |
| FbaI | TGATCA | 2 cut(s) | 207, 420 |
| Fnu4HI | GCNGC | 4 cut(s) | 152, 693, 1062, 1085 |
| FokI | GGATG | 5 cut(s) | 152, 371, 751, 823, 1200 |
| Fsp4HI | GCNGC | 4 cut(s) | 152, 693, 1062, 1085 |
| FspAI | RTGCGCAY | 1 cut(s) | 1023 |
| FspBI | CTAG | 1 cut(s) | 1070 |
| FspI | TGCGCA | 3 cut(s) | 338, 653, 1023 |
| GlaI | GCGC | 4 cut(s) | 338, 653, 728, 1023 |
| GluI | GCNGC | 4 cut(s) | 152, 693, 1062, 1085 |
| GsaI | CCCAGC | 1 cut(s) | 55 |
| GsuI | CTGGAG | 1 cut(s) | 1119 |
| HaeIII | GGCC | 7 cut(s) | 5, 61, 74, 186, 529, 674, 1221 |
| HapII | CCGG | 1 cut(s) | 71 |
| HhaI | GCGC | 4 cut(s) | 339, 654, 729, 1024 |
| Hin1II | CATG | 5 cut(s) | 251, 282, 436, 1028, 1049 |
| Hin6I | GCGC | 4 cut(s) | 337, 652, 727, 1022 |
| HinP1I | GCGC | 4 cut(s) | 337, 652, 727, 1022 |
| HincII | GTYRAC | 4 cut(s) | 331, 389, 444, 910 |
| HindII | GTYRAC | 4 cut(s) | 331, 389, 444, 910 |
| HinfI | GANTC | 5 cut(s) | 41, 84, 367, 833, 894 |
| HpaII | CCGG | 1 cut(s) | 71 |
| HphI | GGTGA | 1 cut(s) | 430 |
| Hpy166II | GTNNAC | 5 cut(s) | 331, 389, 444, 898, 910 |
| Hpy188I | TCNGA | 6 cut(s) | 83, 89, 366, 583, 817, 1159 |
| Hpy188III | TCNNGA | 5 cut(s) | 248, 587, 764, 798, 1004 |
| Hpy8I | GTNNAC | 5 cut(s) | 331, 389, 444, 898, 910 |
| HpyAV | CCTTC | 3 cut(s) | 1022, 1117, 1225 |
| HpyCH4III | ACNGT | 4 cut(s) | 377, 637, 907, 966 |
| HpyCH4IV | ACGT | 3 cut(s) | 466, 688, 912 |
| HpyCH4V | TGCA | 4 cut(s) | 233, 238, 436, 1064 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 433, 461, 680, 689, 1070 |
| HpyF3I | CTNAG | 5 cut(s) | 447, 456, 545, 1013, 1209 |
| HpySE526I | ACGT | 3 cut(s) | 466, 688, 912 |
| Hsp92II | CATG | 5 cut(s) | 251, 282, 436, 1028, 1049 |
| HspAI | GCGC | 4 cut(s) | 337, 652, 727, 1022 |
| Ksp22I | TGATCA | 2 cut(s) | 207, 420 |
| Kzo9I | GATC | 7 cut(s) | 207, 250, 420, 535, 583, 645, 800 |
| LguI | GCTCTTC | 1 cut(s) | 813 |
| LmnI | GCTCC | 4 cut(s) | 89, 159, 319, 1138 |
| Lsp1109I | GCAGC | 4 cut(s) | 163, 679, 1048, 1096 |
| LweI | GCATC | 3 cut(s) | 220, 445, 1222 |
| MaeI | CTAG | 1 cut(s) | 1070 |
| MaeII | ACGT | 3 cut(s) | 466, 688, 912 |
| MaeIII | GTNAC | 3 cut(s) | 595, 966, 1234 |
| MalI | GATC | 7 cut(s) | 209, 252, 422, 537, 585, 647, 802 |
| MboI | GATC | 7 cut(s) | 207, 250, 420, 535, 583, 645, 800 |
| MboII | GAAGA | 8 cut(s) | 112, 165, 425, 500, 545, 800, 857, 903 |
| MflI | RGATCY | 3 cut(s) | 535, 645, 800 |
| MlsI | TGGCCA | 1 cut(s) | 1221 |
| MluCI | AATT | 6 cut(s) | 189, 300, 730, 750, 921, 1008 |
| MluNI | TGGCCA | 1 cut(s) | 1221 |
| MlyI | GAGTC | 2 cut(s) | 78, 903 |
| MmeI | TCCRAC | 5 cut(s) | 69, 120, 156, 648, 914 |
| Mox20I | TGGCCA | 1 cut(s) | 1221 |
| Mph1103I | ATGCAT | 2 cut(s) | 235, 438 |
| MroXI | GAANNNNTTC | 1 cut(s) | 864 |
| MscI | TGGCCA | 1 cut(s) | 1221 |
| MseI | TTAA | 3 cut(s) | 309, 759, 1113 |
| Msp20I | TGGCCA | 1 cut(s) | 1221 |
| MspI | CCGG | 1 cut(s) | 71 |
| MspR9I | CCNGG | 4 cut(s) | 71, 110, 473, 1218 |
| MvaI | CCWGG | 3 cut(s) | 110, 473, 1218 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 433, 461, 680, 689, 1070 |
| NciI | CCSGG | 1 cut(s) | 71 |
| NdeI | CATATG | 1 cut(s) | 975 |
| NdeII | GATC | 7 cut(s) | 207, 250, 420, 535, 583, 645, 800 |
| NlaIII | CATG | 5 cut(s) | 251, 282, 436, 1028, 1049 |
| NlaIV | GGNNCC | 2 cut(s) | 91, 1002 |
| NmeAIII | GCCGAG | 2 cut(s) | 123, 1075 |
| NmuCI | GTSAC | 1 cut(s) | 966 |
| NsbI | TGCGCA | 3 cut(s) | 338, 653, 1023 |
| NsiI | ATGCAT | 2 cut(s) | 235, 438 |
| PagI | TCATGA | 1 cut(s) | 247 |
| PceI | AGGCCT | 1 cut(s) | 529 |
| PciSI | GCTCTTC | 1 cut(s) | 813 |
| PdmI | GAANNNNTTC | 1 cut(s) | 864 |
| PfeI | GAWTC | 3 cut(s) | 41, 367, 833 |
| PkrI | GCNGC | 4 cut(s) | 153, 694, 1063, 1086 |
| PleI | GAGTC | 2 cut(s) | 78, 902 |
| PmaCI | CACGTG | 1 cut(s) | 689 |
| PmlI | CACGTG | 1 cut(s) | 689 |
| PpsI | GAGTC | 2 cut(s) | 78, 902 |
| Ppu21I | YACGTR | 2 cut(s) | 467, 689 |
| PshBI | ATTAAT | 1 cut(s) | 1113 |
| Psp6I | CCWGG | 3 cut(s) | 108, 471, 1216 |
| PspCI | CACGTG | 1 cut(s) | 689 |
| PspFI | CCCAGC | 1 cut(s) | 51 |
| PspGI | CCWGG | 3 cut(s) | 108, 471, 1216 |
| PspN4I | GGNNCC | 2 cut(s) | 91, 1002 |
| PspPI | GGNCC | 3 cut(s) | 185, 673, 1001 |
| PsuI | RGATCY | 3 cut(s) | 535, 645, 800 |
| RsaI | GTAC | 2 cut(s) | 374, 469 |
| RsaNI | GTAC | 2 cut(s) | 373, 468 |
| SapI | GCTCTTC | 1 cut(s) | 813 |
| SaqAI | TTAA | 3 cut(s) | 309, 759, 1113 |
| SatI | GCNGC | 4 cut(s) | 152, 693, 1062, 1085 |
| Sau3AI | GATC | 7 cut(s) | 207, 250, 420, 535, 583, 645, 800 |
| Sau96I | GGNCC | 3 cut(s) | 185, 673, 1001 |
| SchI | GAGTC | 2 cut(s) | 78, 903 |
| ScrFI | CCNGG | 4 cut(s) | 71, 110, 473, 1218 |
| SfaNI | GCATC | 3 cut(s) | 220, 445, 1222 |
| SfcI | CTRYAG | 1 cut(s) | 628 |
| SinI | GGWCC | 1 cut(s) | 1001 |
| SmlI | CTYRAG | 2 cut(s) | 477, 641 |
| SmoI | CTYRAG | 2 cut(s) | 477, 641 |
| Sse9I | AATT | 6 cut(s) | 189, 300, 730, 750, 921, 1008 |
| SseBI | AGGCCT | 1 cut(s) | 529 |
| SsiI | CCGC | 2 cut(s) | 124, 198 |
| SspMI | CTAG | 1 cut(s) | 1070 |
| StuI | AGGCCT | 1 cut(s) | 529 |
| StyD4I | CCNGG | 4 cut(s) | 69, 108, 471, 1216 |
| StyI | CCWWGG | 3 cut(s) | 354, 408, 602 |
| TaaI | ACNGT | 4 cut(s) | 377, 637, 907, 966 |
| TaiI | ACGT | 3 cut(s) | 469, 691, 915 |
| TaqI | TCGA | 4 cut(s) | 15, 513, 777, 871 |
| TasI | AATT | 6 cut(s) | 189, 300, 730, 750, 921, 1008 |
| TfiI | GAWTC | 3 cut(s) | 41, 367, 833 |
| Tru1I | TTAA | 3 cut(s) | 309, 759, 1113 |
| Tru9I | TTAA | 3 cut(s) | 309, 759, 1113 |
| TscAI | CASTG | 2 cut(s) | 562, 642 |
| TseFI | GTSAC | 1 cut(s) | 966 |
| TseI | GCWGC | 4 cut(s) | 151, 692, 1061, 1084 |
| Tsp45I | GTSAC | 1 cut(s) | 966 |
| TspDTI | ATGAA | 9 cut(s) | 154, 236, 421, 825, 857, 873, 947, 962, 1041 |
| TspGWI | ACGGA | 1 cut(s) | 170 |
| TspRI | CASTG | 2 cut(s) | 562, 642 |
| VpaK11BI | GGWCC | 1 cut(s) | 1001 |
| VspI | ATTAAT | 1 cut(s) | 1113 |
| XapI | RAATTY | 1 cut(s) | 1008 |
| XmnI | GAANNNNTTC | 1 cut(s) | 864 |
| XspI | CTAG | 1 cut(s) | 1070 |
| Zsp2I | ATGCAT | 2 cut(s) | 235, 438 |