Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Reverse (-)

15343516 .. 15345305

Gene Structure 1790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGAAGCCACTTGAAAAAATTATGTTTAAATATGTGGAGCTTTGTGTTGACTTGCGCAAGGGTAGATTTGCCAAGGATGGTCGATTCGATCGTATTATATGTCAACAAGTAAATGTCGGTTCCTTGGAAGAGGTGATCAAGCACTTCATGCATCTGTCAACTAAGAAAGCCGAGCGAGCACGTACCCGAGCTCAAGCATTAGAAGAAGCACTTGATGTTGATGACCTCGAAGCGGATAAGAGGCACGAAGATCTAATGCTTGAGTGTCTTGAGCTGTGCAACCCGGAAGTAAAGGATCTCTTCCATCTCCTGGAGCATGAATTTCTACCTCTTGACCTTGCTGTGTCTCGGGTGTATCGGTCGATGAAGATTGAACATTTATCTCGGATGATCCCATTTTATGACTTTTCTGTTGTAGAGAAGATATATGTGGATGCTGTTAAACATAACTTCATAGCTATGAAAGTCGACCATATGAAGGGTGTTATGATGTTTGGTAACTTGGTACCACATTTACGGATCTTCTTTGCTTGCGGCTATGGATCGAGCTCTCGGGTTCCTTATGCGGATGTCTTATCTGTCCGGTCGGTGATTTTACTCCTACACATGTGGATGATAAAGAGCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

210

Amino Acids

24.5

Weight (kDa)

6.8

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF3a_PCI_TPR-like	PF22591	4 - 89	4.6e-15	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	59
Acc65I	GGTACC	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	508
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccI	GTMKAC	1 cut(s)	471
AciI	CCGC	3 cut(s)	236, 537, 569
AclWI	GGATC	4 cut(s)	306, 388, 530, 553
AcsI	RAATTY	1 cut(s)	323
AfaI	GTAC	2 cut(s)	187, 510
AfiI	CCNNNNNNNGG	3 cut(s)	235, 313, 481
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	2 cut(s)	17, 377
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	5 cut(s)	43, 194, 277, 461, 552
AluI	AGCT	5 cut(s)	43, 194, 277, 461, 552
Alw21I	GWGCWC	3 cut(s)	184, 196, 554
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	4 cut(s)	306, 388, 530, 553
Ama87I	CYCGRG	3 cut(s)	189, 351, 555
ApoI	RAATTY	1 cut(s)	323
Asp718I	GGTACC	1 cut(s)	508
AspLEI	GCGC	1 cut(s)	60
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	148, 604
AvaI	CYCGRG	3 cut(s)	189, 351, 555
BanI	GGYRCC	1 cut(s)	508
BanII	GRGCYC	2 cut(s)	196, 554
Bbv12I	GWGCWC	3 cut(s)	184, 196, 554
BccI	CCATC	2 cut(s)	74, 315
BciT130I	CCWGG	1 cut(s)	314
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	354
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	1 cut(s)	538
BlsI	GCNGC	1 cut(s)	539
Bme1390I	CCNGG	2 cut(s)	287, 314
BmeT110I	CYCGRG	3 cut(s)	189, 351, 555
BmiI	GGNNCC	3 cut(s)	124, 510, 561
BmrFI	CCNGG	2 cut(s)	287, 314
BmsI	GCATC	2 cut(s)	163, 427
BpmI	CTGGAG	1 cut(s)	335
BpuEI	CTTGAG	3 cut(s)	180, 284, 293
BpuMI	CCSGG	1 cut(s)	287
BsaAI	YACGTR	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	75, 126
BsaWI	WCCGGW	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 313, 481
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	75, 126
BseGI	GGATG	5 cut(s)	85, 396, 442, 577, 621
BseLI	CCNNNNNNNGG	3 cut(s)	235, 313, 481
Bsh1285I	CGRYCG	3 cut(s)	94, 365, 590
BshNI	GGYRCC	1 cut(s)	508
BsiEI	CGRYCG	3 cut(s)	94, 365, 590
BsiHKAI	GWGCWC	3 cut(s)	184, 196, 554
BsiHKCI	CYCGRG	3 cut(s)	189, 351, 555
BsiSI	CCGG	2 cut(s)	287, 586
BslI	CCNNNNNNNGG	3 cut(s)	235, 313, 481
BsmAI	GTCTC	1 cut(s)	354
BsoBI	CYCGRG	3 cut(s)	189, 351, 555
Bsp1286I	GDGCHC	3 cut(s)	184, 196, 554
Bsp143I	GATC	7 cut(s)	91, 138, 253, 298, 393, 522, 545
BspACI	CCGC	3 cut(s)	236, 537, 569
BspLI	GGNNCC	3 cut(s)	124, 510, 561
BspPI	GGATC	4 cut(s)	306, 388, 530, 553
BspT107I	GGYRCC	1 cut(s)	508
BssECI	CCNNGG	2 cut(s)	75, 126
BssMI	GATC	7 cut(s)	91, 138, 253, 298, 393, 522, 545
BssT1I	CCWWGG	2 cut(s)	75, 126
Bst2UI	CCWGG	1 cut(s)	314
Bst6I	CTCTTC	2 cut(s)	126, 308
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	180, 535
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	5 cut(s)	85, 396, 442, 577, 621
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	7 cut(s)	94, 141, 256, 301, 396, 525, 548
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	7 cut(s)	91, 138, 253, 298, 393, 522, 545
BstMCI	CGRYCG	3 cut(s)	94, 365, 590
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 179
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	2 cut(s)	285, 312
BstX2I	RGATCY	3 cut(s)	253, 298, 522
BstYI	RGATCY	3 cut(s)	253, 298, 522
BtsCI	GGATG	5 cut(s)	85, 396, 442, 577, 621
Cac8I	GCNNGC	2 cut(s)	180, 535
CfoI	GCGC	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	186, 509
CviAII	CATG	3 cut(s)	151, 320, 610
CviJI	RGCY	8 cut(s)	10, 43, 173, 194, 277, 461, 540, 552
CviKI_1	RGCY	8 cut(s)	10, 43, 173, 194, 277, 461, 540, 552
CviQI	GTAC	2 cut(s)	186, 509
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	7 cut(s)	93, 140, 255, 300, 395, 524, 547
DpnII	GATC	7 cut(s)	91, 138, 253, 298, 393, 522, 545
DraI	TTTAAA	1 cut(s)	31
Eam1104I	CTCTTC	2 cut(s)	126, 308
EarI	CTCTTC	2 cut(s)	126, 308
Ecl136II	GAGCTC	2 cut(s)	194, 552
Eco130I	CCWWGG	2 cut(s)	75, 126
Eco24I	GRGCYC	2 cut(s)	196, 554
Eco53kI	GAGCTC	2 cut(s)	194, 552
Eco88I	CYCGRG	3 cut(s)	189, 351, 555
EcoICRI	GAGCTC	2 cut(s)	194, 552
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	75, 126
EcoT22I	ATGCAT	1 cut(s)	156
EcoT38I	GRGCYC	2 cut(s)	196, 554
ErhI	CCWWGG	2 cut(s)	75, 126
FaeI	CATG	3 cut(s)	154, 323, 613
FalI	AAGNNNNNCTT	4 cut(s)	198, 230, 287, 319
FatI	CATG	3 cut(s)	150, 319, 609
FauNDI	CATATG	1 cut(s)	477
FbaI	TGATCA	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	1 cut(s)	538
FokI	GGATG	5 cut(s)	92, 403, 449, 584, 628
FriOI	GRGCYC	2 cut(s)	196, 554
Fsp4HI	GCNGC	1 cut(s)	538
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	538
GsuI	CTGGAG	1 cut(s)	335
HapII	CCGG	2 cut(s)	287, 586
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	154, 323, 613
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	4 cut(s)	52, 107, 162, 472
HindII	GTYRAC	4 cut(s)	52, 107, 162, 472
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	2 cut(s)	287, 586
HphI	GGTGA	2 cut(s)	148, 604
Hpy166II	GTNNAC	4 cut(s)	52, 107, 162, 472
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	2 cut(s)	272, 335
Hpy8I	GTNNAC	4 cut(s)	52, 107, 162, 472
HpyAV	CCTTC	1 cut(s)	475
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	154, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 179
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	154, 323, 613
HspAI	GCGC	1 cut(s)	58
KpnI	GGTACC	1 cut(s)	512
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	7 cut(s)	91, 138, 253, 298, 393, 522, 545
LmnI	GCTCC	2 cut(s)	40, 316
LpnPI	CCDG	4 cut(s)	299, 300, 326, 599
LweI	GCATC	2 cut(s)	163, 427
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	7 cut(s)	93, 140, 255, 300, 395, 524, 547
MboI	GATC	7 cut(s)	91, 138, 253, 298, 393, 522, 545
MboII	GAAGA	7 cut(s)	143, 218, 263, 295, 382, 436, 517
MflI	RGATCY	3 cut(s)	253, 298, 522
MhlI	GDGCHC	3 cut(s)	184, 196, 554
MluCI	AATT	2 cut(s)	21, 323
MnlI	CCTC	4 cut(s)	127, 237, 239, 342
Mph1103I	ATGCAT	1 cut(s)	156
MseI	TTAA	2 cut(s)	30, 444
MslI	CAYNNNNRTG	2 cut(s)	461, 614
MspI	CCGG	2 cut(s)	287, 586
MspR9I	CCNGG	2 cut(s)	287, 314
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	151, 179
NciI	CCSGG	1 cut(s)	287
NdeI	CATATG	1 cut(s)	477
NdeII	GATC	7 cut(s)	91, 138, 253, 298, 393, 522, 545
NlaIII	CATG	3 cut(s)	154, 323, 613
NlaIV	GGNNCC	3 cut(s)	124, 510, 561
NmeAIII	GCCGAG	1 cut(s)	199
NsbI	TGCGCA	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	156
NspI	RCATGY	1 cut(s)	613
PciI	ACATGT	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	87
PflMI	CCANNNNNTGG	1 cut(s)	313
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	539
Ple19I	CGATCG	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	185
PscI	ACATGT	1 cut(s)	609
Psp124BI	GAGCTC	2 cut(s)	196, 554
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	3 cut(s)	124, 510, 561
PsuI	RGATCY	3 cut(s)	253, 298, 522
PvuI	CGATCG	1 cut(s)	94
RsaI	GTAC	2 cut(s)	187, 510
RsaNI	GTAC	2 cut(s)	186, 509
RseI	CAYNNNNRTG	2 cut(s)	461, 614
SacI	GAGCTC	2 cut(s)	196, 554
SalI	GTCGAC	1 cut(s)	470
SaqAI	TTAA	2 cut(s)	30, 444
SatI	GCNGC	1 cut(s)	538
Sau3AI	GATC	7 cut(s)	91, 138, 253, 298, 393, 522, 545
ScrFI	CCNGG	2 cut(s)	287, 314
SduI	GDGCHC	3 cut(s)	184, 196, 554
SfaNI	GCATC	2 cut(s)	163, 427
SmiMI	CAYNNNNRTG	2 cut(s)	461, 614
SmlI	CTYRAG	3 cut(s)	195, 263, 272
SmoI	CTYRAG	3 cut(s)	195, 263, 272
Sse9I	AATT	2 cut(s)	21, 323
SsiI	CCGC	3 cut(s)	236, 537, 569
SstI	GAGCTC	2 cut(s)	196, 554
StyD4I	CCNGG	2 cut(s)	285, 312
StyI	CCWWGG	2 cut(s)	75, 126
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	6 cut(s)	85, 90, 231, 365, 471, 548
TaqII	GACCGA	1 cut(s)	351
TasI	AATT	2 cut(s)	21, 323
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	2 cut(s)	30, 444
Tru9I	TTAA	2 cut(s)	30, 444
TspDTI	ATGAA	6 cut(s)	139, 336, 383, 445, 479, 494
TspGWI	ACGGA	1 cut(s)	535
Van91I	CCANNNNNTGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	471
Zsp2I	ATGCAT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.