Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Forward (+)

37620126 .. 37625268

Gene Structure 5143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG191400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1770 bp

ATGGCCTCCTGCCCCGACCATAACTACACCCTGAACGGCGATTCCAACACCCAGCAATGGCCTCCTCCCCCGGCCATTATCGGACTCGGAGCCTCCAACTCCACTCCCCGGGTCGGGTTCTTCCGCCACTCCAACCCCAAACTCGGCGAGCAGCTCCTCTACTTCATCCTCTCTTCCCTCCGTGGCCCAATTCAATCCGCCAAGGATTTCGATAAGGTCTGGCCAATCTTCGATTCTACGCAATCTCGCGATTTTCGTAAGGTTGTGCAAGGGATTATTAGCGAGCTCGAATCGCAAGGGGCGCTTCCCAGGAGCAATTCGAGGGTTTCATCACTTGCTACATGTTGTGGACCGAGGCGGGTGAAGTTTGCAATCATGGCGAATTTTGCGAAACCGGAAAATGCTTTGAAGCGAGCTGAAGAGTTGATCAATGTTGGGCAGAAGCAAGATGCATTGCAATCGCTTCATGATCTTATTACATCAAAGAGATATAGAGCATGGCAGAAGCCACTTGAAAAAATTATGTTTAAATATGTGGAGCTTTGTGTTGACTTGCGCAAGGGTAGATTTGCCAAGGATGGTATGATTCAGTACCGTATTATATGTCAACAAGTAAATGTCAGTTCCTTGGAAGAGGTGATCAAGCACTTCATGCATCTGTCAACTGAGAAAGCTGAGCAGGCACGTACCCAGGCTCAAGCATTAGAAGAAGCACTTGATGTTGATGACCTCGAAGCAGATAAGAGGCCTGAAGATCTAATGCTAAGTTATGTCAGTGGAGAGAAAGGAAAAGATAGGTCTGATCGTGAAGTTGTTACTCCTTGGTTCAAGTTTTTGTGGGAAACCTACAGAACAGTGCTTGAGATCTTGCGCAACAACTCAAAGTTGGAGGCCCTTTATGCGATGACGGCACATCGAGCCTTTCAGTTCTGCAAGCAATACAAACGAACTACGGAATTTCGAAGGTTATGTGAAATCATCAGGAATCATCTGGCTAATCTGAACAAGTATAGAGATCAAAGAGATCGACCTGACCTATCTGCACCTGAGAGCTTGCAACTGTATCTTGATACTAGATTTGAGCAGCTGAAGATAGCTACTGAACTTGAACTGTGGCAGGAAGCGTTCCGCTCTGTTGAAGATATTCATGGATTGATGTGCATGGTTAAGAAAACCCCTAAACCATCGTTGATGGTGGTTTACTATGCGAAGCTCACAGAAATTTTTTGGATTTCTGCTAGCCACCTTAATCATGCTTATGCATGGTTCAAGCTATTCTCGCTTCAGAAAAGCTTTAACAAAAACTTAAGCCAGAAGGATTTGCAGTTAATAGCATCATCTGTTGTCTTGGCTGCACTTTCAGTTCCCCCCTATGATCAGACACGTGCTGCCTCTCACTTGGAACTTGAAAATGAGAAAGAGCGCAATTTGAGGATGGCTAATCTAATTGGCTTTAATCTTGACCCCAAAATTGACAGAGGAGATGTGCTTTCAAGATCTGCTCTTCTATCAGAACTGGTTCTCATTAATCAACTGAAGGAAGTTGCTCCAGCAATACAAAAGTCAATATCAGAACAGTTTGCTGCTATGATCTTCTCACTGTTTTTGGAAATTGCGAAACATCTCTCTCTTCCTCCAGTCAAGCTACACTGCAGTATGCTTGCTGAGGATGCCATCAAGGCAGCTGTTAAAGACTATCAAACAAACCTGGCTAAATCATCAAATGGCAGCTCAGAGGCCTCACCTGTGGAGAAGGCTGCTAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

589

Amino Acids

67.14

Weight (kDa)

8.88

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS6_N	PF14661	37 - 123	4.1e-17	HAUS augmin-like complex subunit 6 N-terminus
eIF3a_PCI_TPR-like	PF22591	133 - 491	3.6e-132	eIF3a, PCI domain, TPR-like region
NifU_N	PF01592	537 - 569	1.8e-06	NifU-like N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	557, 872
AccBSI	CCGCTC	1 cut(s)	1131
AccII	CGCG	1 cut(s)	249
AciI	CCGC	4 cut(s)	124, 198, 358, 1129
AcoI	YGGCCR	2 cut(s)	72, 221
AcsI	RAATTY	3 cut(s)	382, 956, 1221
AcuI	CTGAAG	5 cut(s)	438, 771, 1109, 1268, 1556
AcvI	CACGTG	1 cut(s)	1385
AfaI	GTAC	2 cut(s)	593, 688
AfiI	CCNNNNNNNGG	5 cut(s)	57, 108, 113, 114, 143
AflII	CTTAAG	1 cut(s)	1306
AflIII	ACRYGT	2 cut(s)	341, 1382
AgsI	TTSAA	9 cut(s)	194, 409, 515, 829, 1109, 1139, 1270, 1409, 1494
AjnI	CCWGG	3 cut(s)	308, 690, 1707
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
Alw21I	GWGCWC	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	8 cut(s)	3, 59, 72, 184, 221, 746, 891, 1737
ApeKI	GCWGC	8 cut(s)	151, 1084, 1352, 1388, 1583, 1682, 1728, 1757
ApoI	RAATTY	3 cut(s)	382, 956, 1221
AseI	ATTAAT	1 cut(s)	1527
Asp700I	GAANNNNTTC	2 cut(s)	1143, 1518
AspLEI	GCGC	4 cut(s)	304, 558, 873, 1425
AspS9I	GGNCC	3 cut(s)	185, 350, 892
AsuC2I	CCSGG	3 cut(s)	71, 109, 110
AsuHPI	GGTGA	3 cut(s)	373, 649, 1734
AsuII	TTCGAA	1 cut(s)	961
AsuNHI	GCTAGC	1 cut(s)	1238
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	288
BbrPI	CACGTG	1 cut(s)	1385
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	1665
BbvI	GCAGC	8 cut(s)	163, 1096, 1339, 1375, 1570, 1694, 1740, 1744
BccI	CCATC	5 cut(s)	572, 1186, 1192, 1429, 1682
BceAI	ACGGC	2 cut(s)	52, 924
BcgI	CGANNNNNNTGC	2 cut(s)	441, 475
BciT130I	CCWGG	3 cut(s)	310, 692, 1709
BclI	TGATCA	3 cut(s)	426, 639, 1375
BcnI	CCSGG	3 cut(s)	71, 109, 110
BfaI	CTAG	2 cut(s)	1074, 1239
BfmI	CTRYAG	2 cut(s)	847, 1651
BfoI	RGCGCY	1 cut(s)	305
BfrI	CTTAAG	1 cut(s)	1306
BglI	GCCNNNNNGGC	1 cut(s)	1679
BglII	AGATCT	3 cut(s)	754, 864, 1496
BisI	GCNGC	8 cut(s)	152, 1085, 1353, 1389, 1584, 1683, 1729, 1758
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	8 cut(s)	153, 1086, 1354, 1390, 1585, 1684, 1730, 1759
Bme1390I	CCNGG	6 cut(s)	71, 109, 110, 310, 692, 1709
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	3 cut(s)	185, 350, 892
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	6 cut(s)	71, 109, 110, 310, 692, 1709
BmsI	GCATC	4 cut(s)	439, 664, 1343, 1660
BmtI	GCTAGC	1 cut(s)	1242
BpmI	CTGGAG	2 cut(s)	1533, 1620
Bpu10I	CCTNAGC	1 cut(s)	1665
Bpu1102I	GCTNAGC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	961
BpuEI	CTTGAG	2 cut(s)	681, 881
BpuMI	CCSGG	3 cut(s)	71, 109, 110
BsaAI	YACGTR	2 cut(s)	686, 1385
BsaWI	WCCGGW	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 108, 113, 114, 143
Bse1I	ACTGG	2 cut(s)	1521, 1637
Bse3DI	GCAATG	2 cut(s)	62, 452
BseBI	CCWGG	3 cut(s)	310, 692, 1709
BseGI	GGATG	4 cut(s)	165, 583, 1440, 1675
BseLI	CCNNNNNNNGG	5 cut(s)	57, 108, 113, 114, 143
BseMI	GCAATG	2 cut(s)	62, 452
BseMII	CTCAG	5 cut(s)	657, 666, 1038, 1656, 1746
BseNI	ACTGG	2 cut(s)	1521, 1637
BseRI	GAGGAG	3 cut(s)	54, 146, 1494
BseXI	GCAGC	8 cut(s)	163, 1096, 1339, 1375, 1570, 1694, 1740, 1744
BseYI	CCCAGC	1 cut(s)	51
BsgI	GTGCAG	2 cut(s)	1026, 1338
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	8 cut(s)	5, 61, 74, 186, 223, 748, 893, 1739
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	71, 109, 395
BslI	CCNNNNNNNGG	5 cut(s)	57, 108, 113, 114, 143
BsnI	GGCC	8 cut(s)	5, 61, 74, 186, 223, 748, 893, 1739
BsoBI	CYCGRG	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	961
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp1720I	GCTNAGC	1 cut(s)	675
Bsp68I	TCGCGA	1 cut(s)	249
BspACI	CCGC	4 cut(s)	124, 198, 358, 1129
BspANI	GGCC	8 cut(s)	5, 61, 74, 186, 223, 748, 893, 1739
BspCNI	CTCAG	5 cut(s)	658, 667, 1039, 1657, 1745
BspFNI	CGCG	1 cut(s)	249
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	1655
BspOI	GCTAGC	1 cut(s)	1242
BspQI	GCTCTTC	1 cut(s)	1509
BspT104I	TTCGAA	1 cut(s)	961
BspTI	CTTAAG	1 cut(s)	1306
BsrBI	CCGCTC	1 cut(s)	1131
BsrDI	GCAATG	2 cut(s)	62, 452
BsrI	ACTGG	2 cut(s)	1521, 1637
BssT1I	CCWWGG	4 cut(s)	201, 573, 627, 821
Bst2UI	CCWGG	3 cut(s)	310, 692, 1709
Bst4CI	ACNGT	6 cut(s)	596, 856, 1062, 1113, 1578, 1602
Bst6I	CTCTTC	5 cut(s)	178, 414, 627, 1509, 1635
BstAFI	CTTAAG	1 cut(s)	1306
BstAPI	GCANNNNNTGC	1 cut(s)	652
BstBAI	YACGTR	2 cut(s)	686, 1385
BstBI	TTCGAA	1 cut(s)	961
BstC8I	GCNNGC	8 cut(s)	149, 284, 414, 681, 935, 1055, 1240, 1662
BstDEI	CTNAG	6 cut(s)	666, 675, 764, 1047, 1665, 1732
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	4 cut(s)	165, 583, 1440, 1675
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	4 cut(s)	304, 558, 873, 1425
BstNI	CCWGG	3 cut(s)	310, 692, 1709
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	6 cut(s)	69, 107, 108, 308, 690, 1707
BstSFI	CTRYAG	2 cut(s)	847, 1651
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	8 cut(s)	163, 1096, 1339, 1375, 1570, 1694, 1740, 1744
BstX2I	RGATCY	3 cut(s)	754, 864, 1496
BstYI	RGATCY	3 cut(s)	754, 864, 1496
BsuRI	GGCC	8 cut(s)	5, 61, 74, 186, 223, 748, 893, 1739
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	917
BtsCI	GGATG	4 cut(s)	165, 583, 1440, 1675
BtsI	GCAGTG	1 cut(s)	1648
BtsIMutI	CAGTG	4 cut(s)	781, 861, 1598, 1648
BtuMI	TCGCGA	1 cut(s)	249
Cac8I	GCNNGC	8 cut(s)	149, 284, 414, 681, 935, 1055, 1240, 1662
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	4 cut(s)	304, 558, 873, 1425
Cfr13I	GGNCC	3 cut(s)	185, 350, 892
Cfr9I	CCCGGG	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	592, 687
CviAII	CATG	9 cut(s)	342, 376, 467, 498, 652, 1148, 1162, 1253, 1263
CviQI	GTAC	2 cut(s)	592, 687
DdeI	CTNAG	6 cut(s)	666, 675, 764, 1047, 1665, 1732
DraI	TTTAAA	1 cut(s)	529
EaeI	YGGCCR	2 cut(s)	72, 221
Eam1104I	CTCTTC	5 cut(s)	178, 414, 627, 1509, 1635
EarI	CTCTTC	5 cut(s)	178, 414, 627, 1509, 1635
EciI	GGCGGA	2 cut(s)	113, 187
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	4 cut(s)	201, 573, 627, 821
Eco147I	AGGCCT	2 cut(s)	748, 1739
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	5 cut(s)	438, 771, 1109, 1268, 1556
Eco72I	CACGTG	1 cut(s)	1385
Eco88I	CYCGRG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	892
EcoRII	CCWGG	3 cut(s)	308, 690, 1707
EcoT14I	CCWWGG	4 cut(s)	201, 573, 627, 821
EcoT22I	ATGCAT	3 cut(s)	454, 657, 1264
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	4 cut(s)	201, 573, 627, 821
FaeI	CATG	9 cut(s)	345, 379, 470, 501, 655, 1151, 1165, 1256, 1266
FalI	AAGNNNNNCTT	4 cut(s)	288, 320, 699, 731
FatI	CATG	9 cut(s)	341, 375, 466, 497, 651, 1147, 1161, 1252, 1262
FauI	CCCGC	1 cut(s)	351
FbaI	TGATCA	3 cut(s)	426, 639, 1375
Fnu4HI	GCNGC	8 cut(s)	152, 1085, 1353, 1389, 1584, 1683, 1729, 1758
FokI	GGATG	4 cut(s)	152, 590, 1447, 1682
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	8 cut(s)	152, 1085, 1353, 1389, 1584, 1683, 1729, 1758
FspBI	CTAG	2 cut(s)	1074, 1239
FspI	TGCGCA	2 cut(s)	557, 872
GlaI	GCGC	4 cut(s)	303, 557, 872, 1424
GluI	GCNGC	8 cut(s)	152, 1085, 1353, 1389, 1584, 1683, 1729, 1758
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	2 cut(s)	1533, 1620
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	8 cut(s)	5, 61, 74, 186, 223, 748, 893, 1739
HapII	CCGG	3 cut(s)	71, 109, 395
HhaI	GCGC	4 cut(s)	304, 558, 873, 1425
Hin1II	CATG	9 cut(s)	345, 379, 470, 501, 655, 1151, 1165, 1256, 1266
Hin6I	GCGC	4 cut(s)	302, 556, 871, 1423
HinP1I	GCGC	4 cut(s)	302, 556, 871, 1423
HincII	GTYRAC	3 cut(s)	550, 608, 663
HindII	GTYRAC	3 cut(s)	550, 608, 663
HindIII	AAGCTT	1 cut(s)	1291
HinfI	GANTC	6 cut(s)	41, 84, 233, 290, 586, 985
HpaII	CCGG	3 cut(s)	71, 109, 395
HphI	GGTGA	3 cut(s)	373, 649, 1734
Hpy166II	GTNNAC	5 cut(s)	350, 550, 608, 663, 1201
Hpy188I	TCNGA	9 cut(s)	83, 89, 802, 1002, 1287, 1380, 1513, 1573, 1735
Hpy188III	TCNNGA	7 cut(s)	248, 467, 806, 982, 1067, 1460, 1494
Hpy8I	GTNNAC	5 cut(s)	350, 550, 608, 663, 1201
HpyAV	CCTTC	4 cut(s)	957, 1309, 1531, 1747
HpyCH4III	ACNGT	6 cut(s)	596, 856, 1062, 1113, 1578, 1602
HpyCH4IV	ACGT	2 cut(s)	685, 1384
HpyF3I	CTNAG	6 cut(s)	666, 675, 764, 1047, 1665, 1732
HpySE526I	ACGT	2 cut(s)	685, 1384
Hsp92II	CATG	9 cut(s)	345, 379, 470, 501, 655, 1151, 1165, 1256, 1266
HspAI	GCGC	4 cut(s)	302, 556, 871, 1423
Ksp22I	TGATCA	3 cut(s)	426, 639, 1375
LguI	GCTCTTC	1 cut(s)	1509
LmnI	GCTCC	5 cut(s)	89, 159, 312, 538, 1552
Lsp1109I	GCAGC	8 cut(s)	163, 1096, 1339, 1375, 1570, 1694, 1740, 1744
LweI	GCATC	4 cut(s)	439, 664, 1343, 1660
MaeI	CTAG	2 cut(s)	1074, 1239
MaeII	ACGT	2 cut(s)	685, 1384
MaeIII	GTNAC	1 cut(s)	814
MbiI	CCGCTC	1 cut(s)	1131
MflI	RGATCY	3 cut(s)	754, 864, 1496
MhlI	GDGCHC	1 cut(s)	288
MlsI	TGGCCA	1 cut(s)	223
MluNI	TGGCCA	1 cut(s)	223
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	4 cut(s)	69, 120, 156, 867
Mox20I	TGGCCA	1 cut(s)	223
Mph1103I	ATGCAT	3 cut(s)	454, 657, 1264
MroXI	GAANNNNTTC	2 cut(s)	1143, 1518
MscI	TGGCCA	1 cut(s)	223
MseI	TTAA	9 cut(s)	528, 1167, 1248, 1296, 1307, 1328, 1455, 1527, 1689
MslI	CAYNNNNRTG	1 cut(s)	1257
Msp20I	TGGCCA	1 cut(s)	223
MspA1I	CMGCKG	2 cut(s)	1087, 1685
MspCI	CTTAAG	1 cut(s)	1306
MspI	CCGG	3 cut(s)	71, 109, 395
MspR9I	CCNGG	6 cut(s)	71, 109, 110, 310, 692, 1709
MvaI	CCWGG	3 cut(s)	310, 692, 1709
MvnI	CGCG	1 cut(s)	249
NciI	CCSGG	3 cut(s)	71, 109, 110
NheI	GCTAGC	1 cut(s)	1238
NlaIII	CATG	9 cut(s)	345, 379, 470, 501, 655, 1151, 1165, 1256, 1266
NlaIV	GGNNCC	1 cut(s)	91
NmeAIII	GCCGAG	1 cut(s)	123
NruI	TCGCGA	1 cut(s)	249
NsbI	TGCGCA	2 cut(s)	557, 872
NsiI	ATGCAT	3 cut(s)	454, 657, 1264
NspI	RCATGY	1 cut(s)	345
NspV	TTCGAA	1 cut(s)	961
PagI	TCATGA	1 cut(s)	466
PceI	AGGCCT	2 cut(s)	748, 1739
PciI	ACATGT	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	1509
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PdmI	GAANNNNTTC	2 cut(s)	1143, 1518
PfeI	GAWTC	5 cut(s)	41, 233, 290, 586, 985
PkrI	GCNGC	8 cut(s)	153, 1086, 1354, 1390, 1585, 1684, 1730, 1759
PleI	GAGTC	1 cut(s)	78
PmaCI	CACGTG	1 cut(s)	1385
PmlI	CACGTG	1 cut(s)	1385
PpsI	GAGTC	1 cut(s)	78
Ppu21I	YACGTR	2 cut(s)	686, 1385
PscI	ACATGT	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	1527
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	3 cut(s)	308, 690, 1707
PspCI	CACGTG	1 cut(s)	1385
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	3 cut(s)	308, 690, 1707
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	3 cut(s)	185, 350, 892
PstI	CTGCAG	1 cut(s)	1655
PsuI	RGATCY	3 cut(s)	754, 864, 1496
PvuII	CAGCTG	2 cut(s)	1087, 1685
RruI	TCGCGA	1 cut(s)	249
RsaI	GTAC	2 cut(s)	593, 688
RsaNI	GTAC	2 cut(s)	592, 687
RseI	CAYNNNNRTG	1 cut(s)	1257
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	1509
SaqAI	TTAA	9 cut(s)	528, 1167, 1248, 1296, 1307, 1328, 1455, 1527, 1689
SatI	GCNGC	8 cut(s)	152, 1085, 1353, 1389, 1584, 1683, 1729, 1758
Sau96I	GGNCC	3 cut(s)	185, 350, 892
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	6 cut(s)	71, 109, 110, 310, 692, 1709
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	4 cut(s)	439, 664, 1343, 1660
SfcI	CTRYAG	2 cut(s)	847, 1651
SfuI	TTCGAA	1 cut(s)	961
SinI	GGWCC	1 cut(s)	350
SmaI	CCCGGG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	1257
SmlI	CTYRAG	3 cut(s)	696, 860, 1306
SmoI	CTYRAG	3 cut(s)	696, 860, 1306
SseBI	AGGCCT	2 cut(s)	748, 1739
SsiI	CCGC	4 cut(s)	124, 198, 358, 1129
SspMI	CTAG	2 cut(s)	1074, 1239
SstI	GAGCTC	1 cut(s)	288
StuI	AGGCCT	2 cut(s)	748, 1739
StyD4I	CCNGG	6 cut(s)	69, 107, 108, 308, 690, 1707
StyI	CCWWGG	4 cut(s)	201, 573, 627, 821
TaaI	ACNGT	6 cut(s)	596, 856, 1062, 1113, 1578, 1602
TaiI	ACGT	2 cut(s)	688, 1387
TaqI	TCGA	8 cut(s)	210, 231, 288, 320, 732, 916, 961, 1027
TaqII	GACCGA	1 cut(s)	367
TfiI	GAWTC	5 cut(s)	41, 233, 290, 586, 985
Tru1I	TTAA	9 cut(s)	528, 1167, 1248, 1296, 1307, 1328, 1455, 1527, 1689
Tru9I	TTAA	9 cut(s)	528, 1167, 1248, 1296, 1307, 1328, 1455, 1527, 1689
TscAI	CASTG	4 cut(s)	781, 861, 1605, 1655
TseI	GCWGC	8 cut(s)	151, 1084, 1352, 1388, 1583, 1682, 1728, 1757
TspDTI	ATGAA	5 cut(s)	154, 318, 455, 640, 1136
TspGWI	ACGGA	2 cut(s)	170, 968
TspMI	CCCGGG	1 cut(s)	108
TspRI	CASTG	4 cut(s)	781, 861, 1605, 1655
Vha464I	CTTAAG	1 cut(s)	1306
VpaK11BI	GGWCC	1 cut(s)	350
VspI	ATTAAT	1 cut(s)	1527
XapI	RAATTY	3 cut(s)	382, 956, 1221
XceI	RCATGY	1 cut(s)	345
XmaI	CCCGGG	1 cut(s)	108
XmnI	GAANNNNTTC	2 cut(s)	1143, 1518
XspI	CTAG	2 cut(s)	1074, 1239
Zsp2I	ATGCAT	3 cut(s)	454, 657, 1264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.