Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001063

Physical Location & Seq

Genomic Coordinates Forward (+)

17475745 .. 17480212

Gene Structure 4468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG116300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1794 bp

ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCAGCAATGGCCTCCTCCCCCGGCCATTATCGGACTCGGAGCCTCCAACTCCACTCCCCGGGTCGGGTTCTTCCGCCACTCCAACCCCAAACTCGGCGAGCAGCTCCTCTACTTCATCCTCTCTTCCCTCCGTGGCCCAATTCAATCCGCCAAGGATTTCGATAAGGTCTGGCCAATCTTCGATTCTACGCAATCTCGCGATTTTCGTAAGGTTGTGCAAGGGATTATTAGTGAGCTCGAATCGCAAGGGGCGCTTCCCAAGAGCAATTCGAGGGTTTCATCACTTGCTACATGTTGTGGACCGAGGCGGGTGAAGTTTGCAATCATGGCGAATTTTGCAAAACCGGAAAATGCTTTGAAGCGAGCTGAAGAGTTGATCAATGTTGGGCAGAAGCAAGATGCATTGCAATCGCTTCATGATCTTATTACATCAAAGAGATATAGAGCATGTTCCTTGGAAGAGGTGATCAAGCACTTCATGCATCTGTCAACTGAGAAAGCTGAGCAGGCACGTACCCAGGCTCAAGCATTAGAAGAAGCACTTGATGTTGATGACCTCGAAGCAGATAAGAGGCCTGAAGATCTAATGCTGAGTTATGTCAGTGGAGAGAAAGGAAAAGATAGGTCTGATCGTGAAGTTGCTACTCCTTGGTTCAAGTTTTTGTGGGAAACCTACAGAACAATGCTTGAGATCTTGCGCAACAACTCAAAGTTGGAGGCCCTTTATGCGATGACAGCACATCGAGCCTTTCAGTTCTGCAAGCAATACAAACGAACTACAGAGTTTCGAAGGTTATGTGAAATCATCAGGAATCATCAGGCTAATCTGAACAAGTATAAAGATCAAAGAGACCGACCTGACCTATCTGCACCTGAGAGCTTGCAACTGTATCTTGATACTAGATTTGAGCAGCTGAAGATAGCTACTGAACTTGAACTGTGGCAGGAAGCGTTCCGCTCTGTTGAAGATATTCATGGATTGATGTGCATGGTTAAGAAAACCCCTAAACCATTGTTGATGGTGGTTTACTATGCGAAGCTCATAGAAATTTTTTGGATTTCTGCTAGCCACCTTAATCATGCTTATGCATGGTTCAAGCTATTCTCGCTTCAGAAAAGCTTTAACAAAAACTTAAGCCAGAAGGATTTGCATTTCTTCTTTATATCACTTGTAGGTCAACATGAAGTTCTTGCTTCGGGCCCTATCGAGGATTTAATTGCTCATCGGGAGCATAGGTACCGCATTTCTGGATCTTCTTTGCTTGCAGCTATGGATCAGAGCTCTCAGGTTCCTTATGCAGATGTCTTATCTGTCCAGTCTGGTGATTTTACTCCTACACATGTAGATGATAAAGAGCAGAGTGATGATGAGAGAAGTGGAAGAGTCCACCCAACTATTGACGTGGCAGAAATTATCAGGCGTTGGACACATGCTTTACAGCGTATTCATAAACAGTCACTTCATATGGCAAAAGCTAATGAGGGAGAGGGTCCAGAAATTCTAAGAAGTGCGCATGAAGGCATTTCAAGTGGTCATGCCGAGTCATTAGCTGCAACACTAGCTGAACATCAGCAGCACTTGGTTAGCTTTCAGGTTCTCATTAATCAACTGAAGGAAGTTGCTCCAGCAATACAAAAGTCAATATCAGAATGTACAGATAAAGTAGATAGCATTTCCTCTAATCTGCCTCCAATGACTAAGCGTCCTGGCCAGATGGAGAAGGTAACAATCAAGGCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001732 GO:0002181 GO:0002183 GO:0002188 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005852 GO:0005886 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043614 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071540 GO:0071541 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI

Protein Analysis

597

Amino Acids

67.91

Weight (kDa)

7.38

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS6_N	PF14661	37 - 131	4.9e-17	HAUS augmin-like complex subunit 6 N-terminus
eIF3a_PCI_TPR-like	PF22591	133 - 167	3e-10	eIF3a, PCI domain, TPR-like region
eIF3a_PCI_TPR-like	PF22591	168 - 401	3.1e-85	eIF3a, PCI domain, TPR-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11420
fragaria_vesca	FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021 FvH4_6g07021
malus_domestica	MD04G1196800.v1.1 MD12G1209700.v1.1
prunus_persica	Prupe.6G317100_v2.0.a1 Prupe.6G317100_v2.0.a1
pyrus_communis	pycom04g17400 pycom12g19700
rosa_chinensis	RchiOBHm_Chr2g0109021 RchiOBHm_Chr3g0456551 RchiOBHm_Chr5g0047251 RchiOBHm_Chr6g0248701
rosa_laevigata	RLG00000025294 RLG00000028631
rosa_multiflora	Rmu_sc0000361.1_g000030 Rmu_sc0000670.1_g000004 Rmu_sc0000955.1_g000029 Rmu_sc0002045.1_g000025 Rmu_sc0002607.1_g000004 Rmu_sc0005473.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037410 Rroxscaffold_2G00104310 Rroxscaffold_3G00230480 Rroxscaffold_3G00256140 Rroxscaffold_6G00422630
rosa_rugosa	Rorug03G0013900 Rorug04G0204200
rosa_samantha	Rh1BG180500 Rh1DG210500 Rh2CG210900 Rh2DG107300 Rh2DG455500 Rh3AG074600 Rh3AG217800 Rh3BG076300 Rh3CG076000 Rh3DG078100 Rh4AG261300 Rh4BG267100 Rh4DG188600 Rh4DG191400 Rh4DG263400 Rh5BG322700 Rh5BG536200 Rh5BG542500 Rh5CG559400 Rh5CG565100 Rh5DG333700 Rh5DG412500 Rh6AG116300 Rh6BG110500 Rh6CG264500
rosa_wichuraiana	Rw3G006380 Rw5G047630 Rw6G003410 Rw6G025160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	749, 1563
Acc65I	GGTACC	1 cut(s)	1287
AccB1I	GGYRCC	1 cut(s)	1287
AccBSI	CCGCTC	1 cut(s)	1008
AccII	CGCG	1 cut(s)	249
AciI	CCGC	5 cut(s)	124, 198, 358, 1006, 1291
AclWI	GGATC	2 cut(s)	1309, 1332
AcoI	YGGCCR	3 cut(s)	72, 221, 1759
AcsI	RAATTY	3 cut(s)	382, 1098, 1548
AcuI	CTGAAG	5 cut(s)	438, 648, 986, 1145, 1682
AfaI	GTAC	3 cut(s)	565, 1289, 1705
AfiI	CCNNNNNNNGG	6 cut(s)	57, 108, 113, 114, 143, 1258
AflII	CTTAAG	1 cut(s)	1183
AflIII	ACRYGT	2 cut(s)	341, 1390
AgsI	TTSAA	7 cut(s)	194, 409, 706, 986, 1016, 1147, 1578
AhdI	GACNNNNNGTC	1 cut(s)	1752
AjiI	CACGTC	1 cut(s)	1453
AjnI	CCWGG	2 cut(s)	567, 1756
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
Alw21I	GWGCWC	2 cut(s)	288, 1334
Alw26I	GTCTC	1 cut(s)	894
AlwI	GGATC	2 cut(s)	1309, 1332
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	9 cut(s)	3, 59, 72, 184, 221, 623, 768, 1249, 1759
ApaI	GGGCCC	1 cut(s)	1253
ApeKI	GCWGC	5 cut(s)	151, 961, 1316, 1601, 1624
ApoI	RAATTY	3 cut(s)	382, 1098, 1548
AseI	ATTAAT	1 cut(s)	1653
Asp700I	GAANNNNTTC	1 cut(s)	1020
Asp718I	GGTACC	1 cut(s)	1287
AspLEI	GCGC	3 cut(s)	304, 750, 1564
AspS9I	GGNCC	6 cut(s)	185, 350, 769, 1249, 1250, 1541
AsuC2I	CCSGG	3 cut(s)	71, 109, 110
AsuHPI	GGTGA	3 cut(s)	373, 526, 1385
AsuII	TTCGAA	1 cut(s)	838
AsuNHI	GCTAGC	1 cut(s)	1115
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	2 cut(s)	350, 1541
BaeGI	GKGCMC	1 cut(s)	1253
BalI	TGGCCA	2 cut(s)	223, 1761
BanI	GGYRCC	1 cut(s)	1287
BanII	GRGCYC	3 cut(s)	288, 1253, 1334
Bbv12I	GWGCWC	2 cut(s)	288, 1334
BbvI	GCAGC	5 cut(s)	163, 973, 1328, 1588, 1636
BccI	CCATC	2 cut(s)	1063, 1759
BceAI	ACGGC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	441, 475
BciT130I	CCWGG	2 cut(s)	569, 1758
BclI	TGATCA	2 cut(s)	426, 516
BcnI	CCSGG	3 cut(s)	71, 109, 110
BcoDI	GTCTC	1 cut(s)	894
BfaI	CTAG	3 cut(s)	951, 1116, 1610
BfmI	CTRYAG	2 cut(s)	724, 828
BfoI	RGCGCY	1 cut(s)	305
BfrI	CTTAAG	1 cut(s)	1183
BglII	AGATCT	2 cut(s)	631, 741
BisI	GCNGC	5 cut(s)	152, 962, 1317, 1602, 1625
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	5 cut(s)	153, 963, 1318, 1603, 1626
Bme1390I	CCNGG	5 cut(s)	71, 109, 110, 569, 1758
Bme18I	GGWCC	2 cut(s)	350, 1541
BmeRI	GACNNNNNGTC	1 cut(s)	1752
BmeT110I	CYCGRG	1 cut(s)	108
BmgBI	CACGTC	1 cut(s)	1453
BmgT120I	GGNCC	6 cut(s)	185, 350, 769, 1249, 1250, 1541
BmiI	GGNNCC	5 cut(s)	91, 1251, 1289, 1341, 1542
BmrFI	CCNGG	5 cut(s)	71, 109, 110, 569, 1758
BmsI	GCATC	2 cut(s)	439, 541
BmtI	GCTAGC	1 cut(s)	1119
BpmI	CTGGAG	1 cut(s)	1659
Bpu1102I	GCTNAGC	1 cut(s)	552
Bpu14I	TTCGAA	1 cut(s)	838
BpuEI	CTTGAG	2 cut(s)	558, 758
BpuMI	CCSGG	3 cut(s)	71, 109, 110
BsaAI	YACGTR	1 cut(s)	563
BsaI	GGTCTC	1 cut(s)	894
BsaJI	CCNNGG	9 cut(s)	69, 107, 108, 181, 201, 353, 504, 567, 698
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	1271, 1301
Bsc4I	CCNNNNNNNGG	6 cut(s)	57, 108, 113, 114, 143, 1258
Bse1I	ACTGG	1 cut(s)	1366
Bse3DI	GCAATG	2 cut(s)	62, 452
BseBI	CCWGG	2 cut(s)	569, 1758
BseDI	CCNNGG	9 cut(s)	69, 107, 108, 181, 201, 353, 504, 567, 698
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	6 cut(s)	57, 108, 113, 114, 143, 1258
BseMI	GCAATG	2 cut(s)	62, 452
BseMII	CTCAG	5 cut(s)	534, 543, 632, 915, 1349
BseNI	ACTGG	1 cut(s)	1366
BseRI	GAGGAG	2 cut(s)	54, 146
BseSI	GKGCMC	1 cut(s)	1253
BseXI	GCAGC	5 cut(s)	163, 973, 1328, 1588, 1636
BseYI	CCCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	903
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	9 cut(s)	5, 61, 74, 186, 223, 625, 770, 1251, 1761
BshNI	GGYRCC	1 cut(s)	1287
BsiHKAI	GWGCWC	2 cut(s)	288, 1334
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	71, 109, 395
BslI	CCNNNNNNNGG	6 cut(s)	57, 108, 113, 114, 143, 1258
BsmAI	GTCTC	1 cut(s)	894
BsnI	GGCC	9 cut(s)	5, 61, 74, 186, 223, 625, 770, 1251, 1761
Bso31I	GGTCTC	1 cut(s)	894
BsoBI	CYCGRG	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	838
Bsp120I	GGGCCC	1 cut(s)	1249
Bsp1286I	GDGCHC	3 cut(s)	288, 1253, 1334
Bsp1407I	TGTACA	1 cut(s)	1703
Bsp143I	GATC	9 cut(s)	426, 469, 516, 631, 679, 741, 892, 1301, 1324
Bsp1720I	GCTNAGC	1 cut(s)	552
Bsp68I	TCGCGA	1 cut(s)	249
BspACI	CCGC	5 cut(s)	124, 198, 358, 1006, 1291
BspANI	GGCC	9 cut(s)	5, 61, 74, 186, 223, 625, 770, 1251, 1761
BspCNI	CTCAG	5 cut(s)	535, 544, 633, 916, 1348
BspFNI	CGCG	1 cut(s)	249
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	5 cut(s)	91, 1251, 1289, 1341, 1542
BspOI	GCTAGC	1 cut(s)	1119
BspPI	GGATC	2 cut(s)	1309, 1332
BspT104I	TTCGAA	1 cut(s)	838
BspT107I	GGYRCC	1 cut(s)	1287
BspTI	CTTAAG	1 cut(s)	1183
BspTNI	GGTCTC	1 cut(s)	894
BsrBI	CCGCTC	1 cut(s)	1008
BsrDI	GCAATG	2 cut(s)	62, 452
BsrGI	TGTACA	1 cut(s)	1703
BsrI	ACTGG	1 cut(s)	1366
BssECI	CCNNGG	9 cut(s)	69, 107, 108, 181, 201, 353, 504, 567, 698
BssMI	GATC	9 cut(s)	426, 469, 516, 631, 679, 741, 892, 1301, 1324
BssT1I	CCWWGG	3 cut(s)	201, 504, 698
Bst2UI	CCWGG	2 cut(s)	569, 1758
Bst4CI	ACNGT	3 cut(s)	939, 990, 1506
Bst6I	CTCTTC	4 cut(s)	178, 414, 504, 1426
BstAFI	CTTAAG	1 cut(s)	1183
BstAPI	GCANNNNNTGC	1 cut(s)	529
BstAUI	TGTACA	1 cut(s)	1703
BstBAI	YACGTR	1 cut(s)	563
BstBI	TTCGAA	1 cut(s)	838
BstC8I	GCNNGC	7 cut(s)	149, 414, 558, 812, 932, 1117, 1314
BstDEI	CTNAG	7 cut(s)	543, 552, 641, 924, 1335, 1553, 1749
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	3 cut(s)	304, 750, 1564
BstKTI	GATC	9 cut(s)	429, 472, 519, 634, 682, 744, 895, 1304, 1327
BstMAI	GTCTC	1 cut(s)	894
BstMBI	GATC	9 cut(s)	426, 469, 516, 631, 679, 741, 892, 1301, 1324
BstNI	CCWGG	2 cut(s)	569, 1758
BstNSI	RCATGY	4 cut(s)	345, 501, 1394, 1484
BstSCI	CCNGG	5 cut(s)	69, 107, 108, 567, 1756
BstSFI	CTRYAG	2 cut(s)	724, 828
BstSLI	GKGCMC	1 cut(s)	1253
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	5 cut(s)	163, 973, 1328, 1588, 1636
BstX2I	RGATCY	3 cut(s)	631, 741, 1301
BstYI	RGATCY	3 cut(s)	631, 741, 1301
BsuRI	GGCC	9 cut(s)	5, 61, 74, 186, 223, 625, 770, 1251, 1761
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	794
BtrI	CACGTC	1 cut(s)	1453
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	658
BtuMI	TCGCGA	1 cut(s)	249
Cac8I	GCNNGC	7 cut(s)	149, 414, 558, 812, 932, 1117, 1314
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	3 cut(s)	304, 750, 1564
Cfr13I	GGNCC	6 cut(s)	185, 350, 769, 1249, 1250, 1541
Cfr9I	CCCGGG	1 cut(s)	108
CseI	GACGC	1 cut(s)	1742
Csp6I	GTAC	3 cut(s)	564, 1288, 1704
CviQI	GTAC	3 cut(s)	564, 1288, 1704
DdeI	CTNAG	7 cut(s)	543, 552, 641, 924, 1335, 1553, 1749
DpnI	GATC	9 cut(s)	428, 471, 518, 633, 681, 743, 894, 1303, 1326
DpnII	GATC	9 cut(s)	426, 469, 516, 631, 679, 741, 892, 1301, 1324
DriI	GACNNNNNGTC	1 cut(s)	1752
EaeI	YGGCCR	3 cut(s)	72, 221, 1759
Eam1104I	CTCTTC	4 cut(s)	178, 414, 504, 1426
Eam1105I	GACNNNNNGTC	1 cut(s)	1752
EarI	CTCTTC	4 cut(s)	178, 414, 504, 1426
EciI	GGCGGA	2 cut(s)	113, 187
Ecl136II	GAGCTC	2 cut(s)	286, 1332
Eco130I	CCWWGG	3 cut(s)	201, 504, 698
Eco147I	AGGCCT	1 cut(s)	625
Eco24I	GRGCYC	3 cut(s)	288, 1253, 1334
Eco31I	GGTCTC	1 cut(s)	894
Eco47I	GGWCC	2 cut(s)	350, 1541
Eco53kI	GAGCTC	2 cut(s)	286, 1332
Eco57I	CTGAAG	5 cut(s)	438, 648, 986, 1145, 1682
Eco88I	CYCGRG	1 cut(s)	108
EcoICRI	GAGCTC	2 cut(s)	286, 1332
EcoO109I	RGGNCCY	2 cut(s)	769, 1250
EcoRII	CCWGG	2 cut(s)	567, 1756
EcoT14I	CCWWGG	3 cut(s)	201, 504, 698
EcoT22I	ATGCAT	3 cut(s)	454, 534, 1141
EcoT38I	GRGCYC	3 cut(s)	288, 1253, 1334
ErhI	CCWWGG	3 cut(s)	201, 504, 698
FalI	AAGNNNNNCTT	4 cut(s)	288, 320, 576, 608
FauI	CCCGC	1 cut(s)	351
FauNDI	CATATG	1 cut(s)	1515
FbaI	TGATCA	2 cut(s)	426, 516
Fnu4HI	GCNGC	5 cut(s)	152, 962, 1317, 1602, 1625
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	3 cut(s)	288, 1253, 1334
Fsp4HI	GCNGC	5 cut(s)	152, 962, 1317, 1602, 1625
FspAI	RTGCGCAY	1 cut(s)	1563
FspBI	CTAG	3 cut(s)	951, 1116, 1610
FspI	TGCGCA	2 cut(s)	749, 1563
GlaI	GCGC	3 cut(s)	303, 749, 1563
GluI	GCNGC	5 cut(s)	152, 962, 1317, 1602, 1625
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	1659
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	9 cut(s)	5, 61, 74, 186, 223, 625, 770, 1251, 1761
HapII	CCGG	3 cut(s)	71, 109, 395
HgaI	GACGC	1 cut(s)	1742
HhaI	GCGC	3 cut(s)	304, 750, 1564
Hin6I	GCGC	3 cut(s)	302, 748, 1562
HinP1I	GCGC	3 cut(s)	302, 748, 1562
HincII	GTYRAC	2 cut(s)	540, 1229
HindII	GTYRAC	2 cut(s)	540, 1229
HindIII	AAGCTT	1 cut(s)	1168
HinfI	GANTC	7 cut(s)	41, 84, 233, 290, 862, 1434, 1592
HpaII	CCGG	3 cut(s)	71, 109, 395
HphI	GGTGA	3 cut(s)	373, 526, 1385
Hpy166II	GTNNAC	5 cut(s)	350, 540, 1078, 1229, 1438
Hpy188I	TCNGA	7 cut(s)	83, 89, 679, 879, 1164, 1329, 1699
Hpy188III	TCNNGA	8 cut(s)	248, 467, 683, 859, 944, 1277, 1299, 1544
Hpy8I	GTNNAC	5 cut(s)	350, 540, 1078, 1229, 1438
HpyAV	CCTTC	5 cut(s)	834, 1186, 1562, 1657, 1765
HpyCH4III	ACNGT	3 cut(s)	939, 990, 1506
HpyCH4IV	ACGT	2 cut(s)	562, 1452
HpyF3I	CTNAG	7 cut(s)	543, 552, 641, 924, 1335, 1553, 1749
HpySE526I	ACGT	2 cut(s)	562, 1452
HspAI	GCGC	3 cut(s)	302, 748, 1562
KpnI	GGTACC	1 cut(s)	1291
Ksp22I	TGATCA	2 cut(s)	426, 516
Kzo9I	GATC	9 cut(s)	426, 469, 516, 631, 679, 741, 892, 1301, 1324
LmnI	GCTCC	4 cut(s)	89, 159, 1279, 1678
Lsp1109I	GCAGC	5 cut(s)	163, 973, 1328, 1588, 1636
LweI	GCATC	2 cut(s)	439, 541
MaeI	CTAG	3 cut(s)	951, 1116, 1610
MaeII	ACGT	2 cut(s)	562, 1452
MaeIII	GTNAC	2 cut(s)	1506, 1774
MalI	GATC	9 cut(s)	428, 471, 518, 633, 681, 743, 894, 1303, 1326
MbiI	CCGCTC	1 cut(s)	1008
MboI	GATC	9 cut(s)	426, 469, 516, 631, 679, 741, 892, 1301, 1324
MflI	RGATCY	3 cut(s)	631, 741, 1301
MhlI	GDGCHC	3 cut(s)	288, 1253, 1334
MlsI	TGGCCA	2 cut(s)	223, 1761
MluCI	AATT	7 cut(s)	189, 316, 382, 1098, 1266, 1461, 1548
MluNI	TGGCCA	2 cut(s)	223, 1761
MlyI	GAGTC	3 cut(s)	78, 1443, 1601
MmeI	TCCRAC	5 cut(s)	69, 120, 156, 744, 1454
Mox20I	TGGCCA	2 cut(s)	223, 1761
Mph1103I	ATGCAT	3 cut(s)	454, 534, 1141
MroXI	GAANNNNTTC	1 cut(s)	1020
MscI	TGGCCA	2 cut(s)	223, 1761
MseI	TTAA	6 cut(s)	1044, 1125, 1173, 1184, 1265, 1653
MslI	CAYNNNNRTG	2 cut(s)	1134, 1395
Msp20I	TGGCCA	2 cut(s)	223, 1761
MspA1I	CMGCKG	1 cut(s)	964
MspCI	CTTAAG	1 cut(s)	1183
MspI	CCGG	3 cut(s)	71, 109, 395
MspR9I	CCNGG	5 cut(s)	71, 109, 110, 569, 1758
MvaI	CCWGG	2 cut(s)	569, 1758
MvnI	CGCG	1 cut(s)	249
NciI	CCSGG	3 cut(s)	71, 109, 110
NdeI	CATATG	1 cut(s)	1515
NdeII	GATC	9 cut(s)	426, 469, 516, 631, 679, 741, 892, 1301, 1324
NheI	GCTAGC	1 cut(s)	1115
NlaIV	GGNNCC	5 cut(s)	91, 1251, 1289, 1341, 1542
NmeAIII	GCCGAG	2 cut(s)	123, 1615
NmuCI	GTSAC	1 cut(s)	1506
NruI	TCGCGA	1 cut(s)	249
NsbI	TGCGCA	2 cut(s)	749, 1563
NsiI	ATGCAT	3 cut(s)	454, 534, 1141
NspI	RCATGY	4 cut(s)	345, 501, 1394, 1484
NspV	TTCGAA	1 cut(s)	838
PagI	TCATGA	1 cut(s)	466
PceI	AGGCCT	1 cut(s)	625
PciI	ACATGT	2 cut(s)	341, 1390
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	1020
PfeI	GAWTC	4 cut(s)	41, 233, 290, 862
PkrI	GCNGC	5 cut(s)	153, 963, 1318, 1603, 1626
PleI	GAGTC	3 cut(s)	78, 1442, 1600
PpsI	GAGTC	3 cut(s)	78, 1442, 1600
Ppu21I	YACGTR	1 cut(s)	563
PscI	ACATGT	2 cut(s)	341, 1390
PshBI	ATTAAT	1 cut(s)	1653
Psp124BI	GAGCTC	2 cut(s)	288, 1334
Psp6I	CCWGG	2 cut(s)	567, 1756
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	2 cut(s)	567, 1756
PspN4I	GGNNCC	5 cut(s)	91, 1251, 1289, 1341, 1542
PspOMI	GGGCCC	1 cut(s)	1249
PspPI	GGNCC	6 cut(s)	185, 350, 769, 1249, 1250, 1541
PsuI	RGATCY	3 cut(s)	631, 741, 1301
PvuII	CAGCTG	1 cut(s)	964
RruI	TCGCGA	1 cut(s)	249
RsaI	GTAC	3 cut(s)	565, 1289, 1705
RsaNI	GTAC	3 cut(s)	564, 1288, 1704
RseI	CAYNNNNRTG	2 cut(s)	1134, 1395
SacI	GAGCTC	2 cut(s)	288, 1334
SaqAI	TTAA	6 cut(s)	1044, 1125, 1173, 1184, 1265, 1653
SatI	GCNGC	5 cut(s)	152, 962, 1317, 1602, 1625
Sau3AI	GATC	9 cut(s)	426, 469, 516, 631, 679, 741, 892, 1301, 1324
Sau96I	GGNCC	6 cut(s)	185, 350, 769, 1249, 1250, 1541
SchI	GAGTC	3 cut(s)	78, 1443, 1601
ScrFI	CCNGG	5 cut(s)	71, 109, 110, 569, 1758
SduI	GDGCHC	3 cut(s)	288, 1253, 1334
SfaNI	GCATC	2 cut(s)	439, 541
SfcI	CTRYAG	2 cut(s)	724, 828
SfuI	TTCGAA	1 cut(s)	838
SinI	GGWCC	2 cut(s)	350, 1541
SmaI	CCCGGG	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	1134, 1395
SmlI	CTYRAG	3 cut(s)	573, 737, 1183
SmoI	CTYRAG	3 cut(s)	573, 737, 1183
Sse9I	AATT	7 cut(s)	189, 316, 382, 1098, 1266, 1461, 1548
SseBI	AGGCCT	1 cut(s)	625
SsiI	CCGC	5 cut(s)	124, 198, 358, 1006, 1291
SspMI	CTAG	3 cut(s)	951, 1116, 1610
SstI	GAGCTC	2 cut(s)	288, 1334
StuI	AGGCCT	1 cut(s)	625
StyD4I	CCNGG	5 cut(s)	69, 107, 108, 567, 1756
StyI	CCWWGG	3 cut(s)	201, 504, 698
TaaI	ACNGT	3 cut(s)	939, 990, 1506
TaiI	ACGT	2 cut(s)	565, 1455
TaqI	TCGA	8 cut(s)	210, 231, 288, 320, 609, 793, 838, 1257
TaqII	GACCGA	2 cut(s)	367, 918
TasI	AATT	7 cut(s)	189, 316, 382, 1098, 1266, 1461, 1548
TatI	WGTACW	1 cut(s)	1703
TfiI	GAWTC	4 cut(s)	41, 233, 290, 862
Tru1I	TTAA	6 cut(s)	1044, 1125, 1173, 1184, 1265, 1653
Tru9I	TTAA	6 cut(s)	1044, 1125, 1173, 1184, 1265, 1653
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	1 cut(s)	1506
TseI	GCWGC	5 cut(s)	151, 961, 1316, 1601, 1624
Tsp45I	GTSAC	1 cut(s)	1506
TspDTI	ATGAA	9 cut(s)	154, 318, 455, 517, 1013, 1248, 1487, 1502, 1581
TspGWI	ACGGA	1 cut(s)	170
TspMI	CCCGGG	1 cut(s)	108
TspRI	CASTG	1 cut(s)	658
Vha464I	CTTAAG	1 cut(s)	1183
VpaK11BI	GGWCC	2 cut(s)	350, 1541
VspI	ATTAAT	1 cut(s)	1653
XapI	RAATTY	3 cut(s)	382, 1098, 1548
XceI	RCATGY	4 cut(s)	345, 501, 1394, 1484
XmaI	CCCGGG	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	1020
XspI	CTAG	3 cut(s)	951, 1116, 1610
Zsp2I	ATGCAT	3 cut(s)	454, 534, 1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.