Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002605

Physical Location & Seq

Genomic Coordinates Forward (+)

10100052 .. 10127982

Gene Structure 27931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG110200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGCTGTATTACAGTGGTGGGCAGGCAAAGAAGCTCAAAGTTGTGGTACTCGAGCAGCTCAACCGACAGTGACACTTATGACACAAAGAAAGTTGGTGCTGAAGAAGATTTTTACGATTTTCTTAGGTGGCTTGAAAGATATGAAATGGAAGCCCAAGGTGTGGCTCCCAAGAGGGGTTGGGGATTTCGTGGTATGCACAAGTTGTGGTTTTCTCTTTACTCAGTTCTACGAAAGCGAACTTCTCCTGATGCTGCTGAATACAAATTGTCTACTATCCAAATGAGTTTGAGACAGAACTTAAAAAAGAACCTGAGCCTAATACAGAGGTTCTCATTGATGAACCTACCATGGGGATCGCTTAATCCTATTCTCGCCTCCGCCGAAAAACCAAGATTGAATTCACAAAAGCACAAGATTGGGAGGTCATCAACCAAGCCTGGAGCTGAATTCAAGCAGAAATCTGTTCACACTGTCCAATTTAGGTACATATACTGCTCCTCAGCTGGTGTTTATCTCAAATCTGATCAATTGCCTCACTTTGAGCTCAAGTACTTTGATGATACTCTTCCAGCTCAATTATTGTGGATCTGCTCTATATTAAGAGCCGCCGCGGACGCCGCCGGATTATCCTCTTCGTTCTGGAAATTAAAATGTAAAGGGGAGCTTCTGAAATGGTACAAGGAACTGCCAGAAAAGAAGATGGGTATTCCTAATCCAGTAGCGATCAAGCAGTTACAAAAGAAAAGGAATCATTTTCGCTGGCAAGTATTTGCCAATATAGGGGGGTCGGGCTTTTTCCCCAGTGGACATATACGATTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

275

Amino Acids

31.71

Weight (kDa)

9.88

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11060
fragaria_vesca	FvH4_4g00740 FvH4_6g07030 FvH4_6g07030
malus_domestica	MD04G1196700.v1.1 MD12G1209600.v1.1
prunus_persica	Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1 Prupe.6G317000_v2.0.a1
pyrus_communis	pycom12g19690
rosa_chinensis	RchiOBHm_Chr1g0345881 RchiOBHm_Chr2g0130211 RchiOBHm_Chr3g0456561 RchiOBHm_Chr3g0481651 RchiOBHm_Chr4g0404121 RchiOBHm_Chr4g0439671 RchiOBHm_Chr6g0253121
rosa_laevigata	RLG00000000940 RLG00000007307 RLG00000025293
rosa_multiflora	Rmu_sc0002607.1_g000003 Rmu_sc0017908.1_g000012
rosa_roxburghii	Rroxscaffold_2G00133280 Rroxscaffold_4G00309030 Rroxscaffold_4G00314410 Rroxscaffold_5G00340470 Rroxscaffold_5G00380600 Rroxscaffold_6G00422620
rosa_rugosa	Rorug03G0013900 Rorug03G0013900
rosa_samantha	Rh1CG068600 Rh3AG074700 Rh3BG076400 Rh3DG078200 Rh5AG110200 Rh5DG213600 Rh7DG365300
rosa_wichuraiana	Rw3G006390 Rw3G008940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	272
AccII	CGCG	1 cut(s)	614
AciI	CCGC	5 cut(s)	381, 609, 612, 614, 621
AclWI	GGATC	2 cut(s)	364, 596
AcsI	RAATTY	2 cut(s)	400, 449
AcuI	CTGAAG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	618
AfaI	GTAC	4 cut(s)	50, 488, 554, 680
AfiI	CCNNNNNNNGG	4 cut(s)	163, 176, 352, 783
AgsI	TTSAA	3 cut(s)	137, 400, 454
AjnI	CCWGG	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
AluBI	AGCT	8 cut(s)	6, 36, 60, 446, 506, 547, 575, 667
AluI	AGCT	8 cut(s)	6, 36, 60, 446, 506, 547, 575, 667
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	2 cut(s)	364, 596
Ama87I	CYCGRG	1 cut(s)	52
ApeKI	GCWGC	2 cut(s)	57, 254
ApoI	RAATTY	2 cut(s)	400, 449
AvaI	CYCGRG	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	549
Bbv12I	GWGCWC	1 cut(s)	549
BbvCI	CCTCAGC	1 cut(s)	502
BbvI	GCAGC	2 cut(s)	69, 241
BccI	CCATC	1 cut(s)	697
BciT130I	CCWGG	1 cut(s)	441
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	826
BisI	GCNGC	5 cut(s)	58, 255, 609, 612, 621
BlsI	GCNGC	5 cut(s)	59, 256, 610, 613, 622
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	1 cut(s)	441
BmeT110I	CYCGRG	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	441
BmrI	ACTGGG	1 cut(s)	798
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	798
BpmI	CTGGAG	1 cut(s)	462
Bpu10I	CCTNAGC	2 cut(s)	314, 502
BpuEI	CTTGAG	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	618
BsaJI	CCNNGG	3 cut(s)	157, 350, 612
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 176, 352, 783
Bse1I	ACTGG	2 cut(s)	719, 804
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	157, 350, 612
BseLI	CCNNNNNNNGG	4 cut(s)	163, 176, 352, 783
BseMII	CTCAG	3 cut(s)	237, 305, 516
BseNI	ACTGG	2 cut(s)	719, 804
BseRI	GAGGAG	1 cut(s)	490
BseXI	GCAGC	2 cut(s)	69, 241
Bsh1236I	CGCG	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	624
BslI	CCNNNNNNNGG	4 cut(s)	163, 176, 352, 783
BsmAI	GTCTC	1 cut(s)	286
BsoBI	CYCGRG	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	4 cut(s)	356, 526, 588, 726
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	5 cut(s)	381, 609, 612, 614, 621
BspCNI	CTCAG	3 cut(s)	236, 306, 515
BspFNI	CGCG	1 cut(s)	614
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	2 cut(s)	364, 596
BsrI	ACTGG	2 cut(s)	719, 804
BssECI	CCNNGG	3 cut(s)	157, 350, 612
BssMI	GATC	4 cut(s)	356, 526, 588, 726
BssNI	GRCGYC	1 cut(s)	618
BssT1I	CCWWGG	2 cut(s)	157, 350
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	3 cut(s)	16, 71, 475
Bst6I	CTCTTC	2 cut(s)	573, 640
BstACI	GRCGYC	1 cut(s)	618
BstC8I	GCNNGC	2 cut(s)	26, 764
BstDEI	CTNAG	4 cut(s)	125, 223, 314, 502
BstDSI	CCRYGG	2 cut(s)	350, 612
BstFNI	CGCG	1 cut(s)	614
BstKTI	GATC	4 cut(s)	359, 529, 591, 729
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	4 cut(s)	356, 526, 588, 726
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 620
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	1 cut(s)	439
BstUI	CGCG	1 cut(s)	614
BstV1I	GCAGC	2 cut(s)	69, 241
BstX2I	RGATCY	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	588
BtgI	CCRYGG	2 cut(s)	350, 612
BtsIMutI	CAGTG	4 cut(s)	21, 76, 471, 811
Cac8I	GCNNGC	2 cut(s)	26, 764
Cfr42I	CCGCGG	1 cut(s)	615
CseI	GACGC	1 cut(s)	626
Csp6I	GTAC	4 cut(s)	49, 487, 553, 679
CspCI	CAANNNNNGTGG	2 cut(s)	566, 601
CviAII	CATG	1 cut(s)	351
CviQI	GTAC	4 cut(s)	49, 487, 553, 679
DdeI	CTNAG	4 cut(s)	125, 223, 314, 502
DpnI	GATC	4 cut(s)	358, 528, 590, 728
DpnII	GATC	4 cut(s)	356, 526, 588, 726
Eam1104I	CTCTTC	2 cut(s)	573, 640
EarI	CTCTTC	2 cut(s)	573, 640
EciI	GGCGGA	1 cut(s)	370
Ecl136II	GAGCTC	1 cut(s)	547
Eco130I	CCWWGG	2 cut(s)	157, 350
Eco24I	GRGCYC	1 cut(s)	549
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	547
EcoRI	GAATTC	2 cut(s)	400, 449
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	2 cut(s)	157, 350
EcoT38I	GRGCYC	1 cut(s)	549
ErhI	CCWWGG	2 cut(s)	157, 350
FaeI	CATG	1 cut(s)	354
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FatI	CATG	1 cut(s)	350
FbaI	TGATCA	1 cut(s)	526
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	5 cut(s)	58, 255, 609, 612, 621
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	5 cut(s)	58, 255, 609, 612, 621
FspBI	CTAG	1 cut(s)	826
GluI	GCNGC	5 cut(s)	58, 255, 609, 612, 621
GsuI	CTGGAG	1 cut(s)	462
HapII	CCGG	1 cut(s)	624
HgaI	GACGC	1 cut(s)	626
Hin1I	GRCGYC	1 cut(s)	618
Hin1II	CATG	1 cut(s)	354
HinfI	GANTC	1 cut(s)	751
HpaII	CCGG	1 cut(s)	624
Hpy166II	GTNNAC	3 cut(s)	273, 469, 809
Hpy188I	TCNGA	2 cut(s)	526, 672
Hpy188III	TCNNGA	2 cut(s)	248, 643
Hpy8I	GTNNAC	3 cut(s)	273, 469, 809
HpyCH4III	ACNGT	3 cut(s)	16, 71, 475
HpyCH4V	TGCA	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 620
HpyF3I	CTNAG	4 cut(s)	125, 223, 314, 502
Hsp92I	GRCGYC	1 cut(s)	618
Hsp92II	CATG	1 cut(s)	354
Ksp22I	TGATCA	1 cut(s)	526
KspI	CCGCGG	1 cut(s)	615
Kzo9I	GATC	4 cut(s)	356, 526, 588, 726
LmnI	GCTCC	4 cut(s)	172, 443, 503, 664
Lsp1109I	GCAGC	2 cut(s)	69, 241
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	826
MaeIII	GTNAC	2 cut(s)	71, 735
MalI	GATC	4 cut(s)	358, 528, 590, 728
MboI	GATC	4 cut(s)	356, 526, 588, 726
MboII	GAAGA	5 cut(s)	116, 119, 560, 627, 712
MfeI	CAATTG	1 cut(s)	530
MflI	RGATCY	1 cut(s)	588
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	7 cut(s)	266, 400, 449, 479, 530, 578, 647
MnlI	CCTC	7 cut(s)	168, 321, 388, 417, 511, 546, 643
MseI	TTAA	4 cut(s)	302, 363, 602, 650
MspA1I	CMGCKG	2 cut(s)	506, 614
MspI	CCGG	1 cut(s)	624
MspR9I	CCNGG	1 cut(s)	441
MunI	CAATTG	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	1 cut(s)	614
MwoI	GCNNNNNNNGC	2 cut(s)	617, 620
NcoI	CCATGG	1 cut(s)	350
NdeII	GATC	4 cut(s)	356, 526, 588, 726
NlaIII	CATG	1 cut(s)	354
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	71
PaeR7I	CTCGAG	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	751
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	5 cut(s)	59, 256, 610, 613, 622
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	168
PspXI	VCTCGAGB	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	588
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	4 cut(s)	50, 488, 554, 680
RsaNI	GTAC	4 cut(s)	49, 487, 553, 679
SacI	GAGCTC	1 cut(s)	549
SacII	CCGCGG	1 cut(s)	615
SaqAI	TTAA	4 cut(s)	302, 363, 602, 650
SatI	GCNGC	5 cut(s)	58, 255, 609, 612, 621
Sau3AI	GATC	4 cut(s)	356, 526, 588, 726
ScaI	AGTACT	1 cut(s)	554
ScrFI	CCNGG	1 cut(s)	441
SduI	GDGCHC	1 cut(s)	549
SfaNI	GCATC	1 cut(s)	241
Sfr274I	CTCGAG	1 cut(s)	52
Sfr303I	CCGCGG	1 cut(s)	615
SgrBI	CCGCGG	1 cut(s)	615
SlaI	CTCGAG	1 cut(s)	52
SmlI	CTYRAG	2 cut(s)	52, 548
SmoI	CTYRAG	2 cut(s)	52, 548
Sse9I	AATT	7 cut(s)	266, 400, 449, 479, 530, 578, 647
SsiI	CCGC	5 cut(s)	381, 609, 612, 614, 621
SspMI	CTAG	1 cut(s)	826
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	2 cut(s)	157, 350
TaaI	ACNGT	3 cut(s)	16, 71, 475
TaqI	TCGA	1 cut(s)	53
TasI	AATT	7 cut(s)	266, 400, 449, 479, 530, 578, 647
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	3 cut(s)	611, 614, 623
TfiI	GAWTC	1 cut(s)	751
Tru1I	TTAA	4 cut(s)	302, 363, 602, 650
Tru9I	TTAA	4 cut(s)	302, 363, 602, 650
TscAI	CASTG	4 cut(s)	21, 76, 478, 811
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	2 cut(s)	57, 254
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	159, 356
TspRI	CASTG	4 cut(s)	21, 76, 478, 811
Van91I	CCANNNNNTGG	1 cut(s)	163
XapI	RAATTY	2 cut(s)	400, 449
XhoI	CTCGAG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	272
XspI	CTAG	1 cut(s)	826
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.