FvH4_6g07030

Single-stranded DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002605
Physical Location & Seq
Forward (+)
4235187 .. 4237610
2424 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07030.t1

Sequence Viewer

Length: 645 bp
ATGAGTTCAGTCGCTGCGAGACTTTCCAAGTTCATCAGAGCCTCTGTTCCTTCATCGCAAACTTCCTCACTAGCGGTGGGCGGGCAGAGAAGCTCAAAATTGGGGTACTCTAGCAGCTCAACCGACAGCAACACTGATGACACAAAGAAGGTTGGCGCTGAAGAAGATATTGATGATTTTCTTGGTGGTCTGAAAGATGTGGACCTGGCAGCCCAAGGTGTGGATCCCAAGAGGGGTTGGGGATTTCGCGGTGTGCACAAGGCAATTATTTGTGGAAGAGTTGGGCAATCCCCCGTGCAGAAGATCTTGAGGAATGGTCGAACTGTAACCATCTTCACTGTTGGGACCGGGGGCAAGTTTGACCAGAGATTACTGCGAAAGGACTTGCCAAAACCAGCTCAGTGGCACCGCATTGCTGTACATAATGACAGACTTGGGGCTTATGCAGTTAAACAATTTGTTAAGAATTCATCAGTTTATGTTGAGGGTGACATCGAGACTAGAGTTTACAACGACAGCATCACTGGTGAAGTTAATAATATTCCGGAGATCTGCATTCGTCACGATGGGAAGATCCGTCTTATAAAGAGTGGAGAAAGCATCAGCAGTATATCCTTGGATGACCTGCGAGAAGACTTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SSB

Protein Analysis

215

Amino Acids

23.29

Weight (kDa)

9.22

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSB PF00436 85 - 187 1.1e-18 Single-strand binding protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
Acc36I ACCTGC 1 cut(s) 633
AccB1I GGYRCC 1 cut(s) 405
AccB7I CCANNNNNTGG 1 cut(s) 220
AccII CGCG 1 cut(s) 249
AccIII TCCGGA 1 cut(s) 544
AciI CCGC 4 cut(s) 74, 81, 249, 409
AclWI GGATC 3 cut(s) 218, 231, 568
AcsI RAATTY 1 cut(s) 466
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 2 cut(s) 107, 420
AfiI CCNNNNNNNGG 2 cut(s) 220, 233
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 3 cut(s) 93, 117, 398
AluI AGCT 3 cut(s) 93, 117, 398
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 2 cut(s) 13, 491
Alw44I GTGCAC 1 cut(s) 254
AlwI GGATC 3 cut(s) 218, 231, 568
AlwNI CAGNNNCTG 1 cut(s) 14
Aor13HI TCCGGA 1 cut(s) 544
ApaLI GTGCAC 1 cut(s) 254
ApeKI GCWGC 3 cut(s) 14, 114, 209
ApoI RAATTY 1 cut(s) 466
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 202, 345
AsuC2I CCSGG 1 cut(s) 349
AsuHPI GGTGA 2 cut(s) 500, 539
AvaII GGWCC 2 cut(s) 202, 345
BaeGI GKGCMC 1 cut(s) 258
BamHI GGATCC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 126, 221
BccI CCATC 2 cut(s) 338, 560
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 13, 491
BfaI CTAG 3 cut(s) 71, 111, 501
BfoI RGCGCY 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 633
BglII AGATCT 2 cut(s) 303, 549
BisI GCNGC 3 cut(s) 15, 115, 210
BlsI GCNGC 3 cut(s) 16, 116, 211
Bme1390I CCNGG 2 cut(s) 206, 349
Bme18I GGWCC 2 cut(s) 202, 345
BmgT120I GGNCC 2 cut(s) 202, 345
BmiI GGNNCC 3 cut(s) 225, 346, 407
BmrFI CCNGG 2 cut(s) 206, 349
BmsI GCATC 2 cut(s) 528, 609
BpiI GAAGAC 1 cut(s) 639
BpuEI CTTGAG 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 349
BsaJI CCNNGG 3 cut(s) 214, 348, 615
BsaWI WCCGGW 1 cut(s) 544
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 233
Bse1I ACTGG 1 cut(s) 529
Bse3DI GCAATG 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 544
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 3 cut(s) 214, 348, 615
BseGI GGATG 1 cut(s) 625
BseLI CCNNNNNNNGG 2 cut(s) 220, 233
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 1 cut(s) 529
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 2 cut(s) 126, 221
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 2 cut(s) 348, 545
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 2 cut(s) 220, 233
BsmAI GTCTC 2 cut(s) 13, 491
BsmFI GGGAC 1 cut(s) 358
BsmI GAATGC 1 cut(s) 555
Bsp1286I GDGCHC 1 cut(s) 258
Bsp13I TCCGGA 1 cut(s) 544
Bsp1407I TGTACA 1 cut(s) 418
Bsp143I GATC 4 cut(s) 223, 303, 549, 573
BspACI CCGC 4 cut(s) 74, 81, 249, 409
BspCNI CTCAG 1 cut(s) 412
BspEI TCCGGA 1 cut(s) 544
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 3 cut(s) 225, 346, 407
BspMI ACCTGC 1 cut(s) 633
BspPI GGATC 3 cut(s) 218, 231, 568
BspT107I GGYRCC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 411
BsrGI TGTACA 1 cut(s) 418
BsrI ACTGG 1 cut(s) 529
BssECI CCNNGG 3 cut(s) 214, 348, 615
BssMI GATC 4 cut(s) 223, 303, 549, 573
BssT1I CCWWGG 2 cut(s) 214, 615
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 325, 340
Bst6I CTCTTC 1 cut(s) 271
BstAUI TGTACA 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 399, 642
BstF5I GGATG 1 cut(s) 625
BstFNI CGCG 1 cut(s) 249
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 4 cut(s) 226, 306, 552, 576
BstMAI GTCTC 2 cut(s) 13, 491
BstMBI GATC 4 cut(s) 223, 303, 549, 573
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 204, 347
BstSLI GKGCMC 1 cut(s) 258
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 126, 221
BstV2I GAAGAC 1 cut(s) 639
BstX2I RGATCY 4 cut(s) 223, 303, 549, 573
BstXI CCANNNNNNTGG 1 cut(s) 402
BstYI RGATCY 4 cut(s) 223, 303, 549, 573
BtgZI GCGATG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 625
BtsIMutI CAGTG 4 cut(s) 132, 336, 407, 522
BveI ACCTGC 1 cut(s) 633
Cac8I GCNNGC 1 cut(s) 83
CaiI CAGNNNCTG 1 cut(s) 14
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 202, 345
Csp6I GTAC 2 cut(s) 106, 419
CviJI RGCY 6 cut(s) 41, 93, 117, 212, 398, 440
CviKI_1 RGCY 6 cut(s) 41, 93, 117, 212, 398, 440
CviQI GTAC 2 cut(s) 106, 419
DdeI CTNAG 2 cut(s) 399, 642
DpnI GATC 4 cut(s) 225, 305, 551, 575
DpnII GATC 4 cut(s) 223, 303, 549, 573
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Eco130I CCWWGG 2 cut(s) 214, 615
Eco47I GGWCC 2 cut(s) 202, 345
Eco57I CTGAAG 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 214, 615
ErhI CCWWGG 2 cut(s) 214, 615
FaiI YATR 5 cut(s) 423, 444, 480, 584, 611
FaqI GGGAC 1 cut(s) 358
FauI CCCGC 1 cut(s) 74
Fnu4HI GCNGC 3 cut(s) 15, 115, 210
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 3 cut(s) 15, 115, 210
FspBI CTAG 3 cut(s) 71, 111, 501
GlaI GCGC 1 cut(s) 157
GluI GCNGC 3 cut(s) 15, 115, 210
HaeII RGCGCY 1 cut(s) 159
HapII CCGG 2 cut(s) 348, 545
HhaI GCGC 1 cut(s) 158
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HpaII CCGG 2 cut(s) 348, 545
HphI GGTGA 2 cut(s) 500, 539
Hpy166II GTNNAC 3 cut(s) 202, 256, 508
Hpy188I TCNGA 2 cut(s) 38, 192
Hpy188III TCNNGA 4 cut(s) 307, 496, 545, 563
Hpy8I GTNNAC 3 cut(s) 202, 256, 508
HpyAV CCTTC 2 cut(s) 60, 142
HpyCH4III ACNGT 2 cut(s) 325, 340
HpyCH4V TGCA 4 cut(s) 256, 298, 446, 555
HpyF3I CTNAG 2 cut(s) 399, 642
HspAI GCGC 1 cut(s) 156
Kpn2I TCCGGA 1 cut(s) 544
Kzo9I GATC 4 cut(s) 223, 303, 549, 573
LpnPI CCDG 8 cut(s) 191, 218, 361, 377, 408, 510, 558, 638
Lsp1109I GCAGC 2 cut(s) 126, 221
LweI GCATC 2 cut(s) 528, 609
MaeI CTAG 3 cut(s) 71, 111, 501
MaeIII GTNAC 3 cut(s) 325, 488, 560
MalI GATC 4 cut(s) 225, 305, 551, 575
MboI GATC 4 cut(s) 223, 303, 549, 573
MboII GAAGA 7 cut(s) 173, 176, 288, 313, 325, 583, 644
MflI RGATCY 4 cut(s) 223, 303, 549, 573
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 4 cut(s) 98, 264, 455, 466
MnlI CCTC 5 cut(s) 52, 76, 225, 303, 478
MroI TCCGGA 1 cut(s) 544
MseI TTAA 3 cut(s) 450, 462, 534
MspI CCGG 2 cut(s) 348, 545
MspR9I CCNGG 2 cut(s) 206, 349
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 249
NciI CCSGG 1 cut(s) 349
NdeII GATC 4 cut(s) 223, 303, 549, 573
NlaIV GGNNCC 3 cut(s) 225, 346, 407
NmuCI GTSAC 2 cut(s) 488, 560
PctI GAATGC 1 cut(s) 555
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 3 cut(s) 16, 116, 211
PsiI TTATAA 1 cut(s) 584
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 225, 346, 407
PspPI GGNCC 2 cut(s) 202, 345
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 4 cut(s) 223, 303, 549, 573
RsaI GTAC 2 cut(s) 107, 420
RsaNI GTAC 2 cut(s) 106, 419
SaqAI TTAA 3 cut(s) 450, 462, 534
SatI GCNGC 3 cut(s) 15, 115, 210
Sau3AI GATC 4 cut(s) 223, 303, 549, 573
Sau96I GGNCC 2 cut(s) 202, 345
ScrFI CCNGG 2 cut(s) 206, 349
SduI GDGCHC 1 cut(s) 258
SetI ASST 8 cut(s) 95, 119, 153, 207, 220, 400, 627, 643
SfaNI GCATC 2 cut(s) 528, 609
SinI GGWCC 2 cut(s) 202, 345
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 4 cut(s) 98, 264, 455, 466
SsiI CCGC 4 cut(s) 74, 81, 249, 409
SspI AATATT 1 cut(s) 541
SspMI CTAG 3 cut(s) 71, 111, 501
StyD4I CCNGG 2 cut(s) 204, 347
StyI CCWWGG 2 cut(s) 214, 615
TaaI ACNGT 2 cut(s) 325, 340
TaqI TCGA 2 cut(s) 319, 495
TasI AATT 4 cut(s) 98, 264, 455, 466
TatI WGTACW 1 cut(s) 418
Tru1I TTAA 3 cut(s) 450, 462, 534
Tru9I TTAA 3 cut(s) 450, 462, 534
TscAI CASTG 4 cut(s) 139, 343, 407, 529
TseFI GTSAC 2 cut(s) 488, 560
TseI GCWGC 3 cut(s) 14, 114, 209
Tsp45I GTSAC 2 cut(s) 488, 560
TspDTI ATGAA 3 cut(s) 22, 42, 459
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 4 cut(s) 139, 343, 407, 529
Van91I CCANNNNNTGG 1 cut(s) 220
VneI GTGCAC 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 202, 345
XapI RAATTY 1 cut(s) 466
XspI CTAG 3 cut(s) 71, 111, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.