AT4G15910

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002435
Physical Location & Seq
Forward (+)
9028262 .. 9029477
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15910.1

Sequence Viewer

Length: 315 bp
ATGGCCGCTCGTTCACTCTCCGGTGCCGTTAAATCTCTTTGCTCCGCCGCATCCGGAAGTCTGTCTTGTTCCATTGTCTTAAGGAGGAGTTACGTTGCTACATCGCAGAATGTAACAGCAGCAGGATTGAGTAAGGGAGGTTCCACCAGAGTTATGGTGGGGAAGATGGAACAGAGAGGTTTAGATCAAGAGGCAGAGTCTGCTTGGGGACCAGATCCAGTTACTGGATACTACAGACCTTCCAATCGTGCGGCTGAGATTGATCCAGCTGAGCTCAGAGAGTTGCTTTTGAAAAACAAAGCAAAGTCTTTCTGA

Protein Analysis

104

Amino Acids

10.97

Weight (kDa)

9.56

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3a PF03242 2 - 100 4.2e-31 Late embryogenesis abundant protein (LEA_3a subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 8
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 4 cut(s) 6, 45, 48, 251
AclWI GGATC 2 cut(s) 209, 257
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 224
AflII CTTAAG 1 cut(s) 79
AgsI TTSAA 1 cut(s) 292
AluBI AGCT 2 cut(s) 269, 274
AluI AGCT 2 cut(s) 269, 274
Alw21I GWGCWC 1 cut(s) 276
AlwI GGATC 2 cut(s) 209, 257
AlwNI CAGNNNCTG 2 cut(s) 200, 224
Aor13HI TCCGGA 1 cut(s) 53
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 209
AvaII GGWCC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 131
BccI CCATC 1 cut(s) 160
BceAI ACGGC 1 cut(s) 11
BciVI GTATCC 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 232
BfrI CTTAAG 1 cut(s) 79
BfuI GTATCC 1 cut(s) 221
BisI GCNGC 4 cut(s) 6, 48, 120, 252
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 4 cut(s) 7, 49, 121, 253
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 3 cut(s) 25, 142, 210
BmsI GCATC 1 cut(s) 59
Bpu1102I GCTNAGC 1 cut(s) 270
BsaWI WCCGGW 2 cut(s) 20, 53
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 218, 229
BseAI TCCGGA 1 cut(s) 53
BseGI GGATG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 3 cut(s) 246, 261, 289
BseNI ACTGG 2 cut(s) 218, 229
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 131
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 2 cut(s) 21, 54
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 222
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 276
Bsp13I TCCGGA 1 cut(s) 53
Bsp143I GATC 3 cut(s) 184, 214, 262
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 4 cut(s) 6, 45, 48, 251
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 247, 262, 288
BspEI TCCGGA 1 cut(s) 53
BspLI GGNNCC 3 cut(s) 25, 142, 210
BspPI GGATC 2 cut(s) 209, 257
BspT107I GGYRCC 1 cut(s) 23
BspTI CTTAAG 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 8
BsrI ACTGG 2 cut(s) 218, 229
BssMI GATC 3 cut(s) 184, 214, 262
BstAFI CTTAAG 1 cut(s) 79
BstAPI GCANNNNNTGC 1 cut(s) 200
BstDEI CTNAG 3 cut(s) 255, 270, 275
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 3 cut(s) 187, 217, 265
BstMBI GATC 3 cut(s) 184, 214, 262
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 214
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 1 cut(s) 214
BsuI GTATCC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 50
CaiI CAGNNNCTG 2 cut(s) 200, 224
Cfr13I GGNCC 1 cut(s) 209
CviJI RGCY 4 cut(s) 5, 254, 269, 274
CviKI_1 RGCY 4 cut(s) 5, 254, 269, 274
DdeI CTNAG 3 cut(s) 255, 270, 275
DpnI GATC 3 cut(s) 186, 216, 264
DpnII GATC 3 cut(s) 184, 214, 262
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 276
FaiI YATR 1 cut(s) 155
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FaqI GGGAC 1 cut(s) 222
Fnu4HI GCNGC 4 cut(s) 6, 48, 120, 252
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 4 cut(s) 6, 48, 120, 252
GluI GCNGC 4 cut(s) 6, 48, 120, 252
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 21, 54
HinfI GANTC 1 cut(s) 197
HpaII CCGG 2 cut(s) 21, 54
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 278, 314
Hpy188III TCNNGA 2 cut(s) 54, 188
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 3 cut(s) 255, 270, 275
HpySE526I ACGT 1 cut(s) 93
Kpn2I TCCGGA 1 cut(s) 53
Kzo9I GATC 3 cut(s) 184, 214, 262
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 8 cut(s) 34, 67, 108, 160, 210, 225, 231, 279
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 1 cut(s) 59
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 89, 112, 220
MalI GATC 3 cut(s) 186, 216, 264
MbiI CCGCTC 1 cut(s) 8
MboI GATC 3 cut(s) 184, 214, 262
MboII GAAGA 1 cut(s) 175
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 276
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 4 cut(s) 78, 131, 170, 184
MroI TCCGGA 1 cut(s) 53
MseI TTAA 2 cut(s) 30, 80
MspA1I CMGCKG 1 cut(s) 269
MspCI CTTAAG 1 cut(s) 79
MspI CCGG 2 cut(s) 21, 54
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 3 cut(s) 184, 214, 262
NlaIV GGNNCC 3 cut(s) 25, 142, 210
PflMI CCANNNNNTGG 1 cut(s) 224
PkrI GCNGC 4 cut(s) 7, 49, 121, 253
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 276
PspN4I GGNNCC 3 cut(s) 25, 142, 210
PspPI GGNCC 1 cut(s) 209
PsrI GAACNNNNNNTAC 2 cut(s) 124, 156
PstNI CAGNNNCTG 2 cut(s) 200, 224
PsuI RGATCY 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 269
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 2 cut(s) 30, 80
SatI GCNGC 4 cut(s) 6, 48, 120, 252
Sau3AI GATC 3 cut(s) 184, 214, 262
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 1 cut(s) 206
SduI GDGCHC 1 cut(s) 276
SetI ASST 6 cut(s) 96, 142, 181, 241, 271, 276
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
SsiI CCGC 4 cut(s) 6, 45, 48, 251
SstI GAGCTC 1 cut(s) 276
TaiI ACGT 1 cut(s) 96
TauI GCSGC 3 cut(s) 8, 50, 254
Tru1I TTAA 2 cut(s) 30, 80
Tru9I TTAA 2 cut(s) 30, 80
TseI GCWGC 1 cut(s) 119
Van91I CCANNNNNTGG 1 cut(s) 224
Vha464I CTTAAG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 2 cut(s) 151, 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.