Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Reverse (-)

51264485 .. 51269148

Gene Structure 4664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0401600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGACGGTTTTGCCCTTCATCGTCGGTGAATTAGGGCCTGTCGCTGTTAATTTGGATCAGAGCGTCGGTTTTGAAGAGAAAGAGAGAGAAAGGTTGTCGTTCAGACCCAAAAAAAAAAGATTAACCTTTGTGTTTTATGCAATGGAAGGGACTGTGAGCACGAACTGTGTTTGTAATACAGGCGTGTGGTTCTTCCTCCGGAAGTGTCAAAGCTACTTCCAGAGAATTGGCGTTTTCCTGACAGTCATTGGATTTTATGCAAAAGAATTTTGGCACCATCTTTCTGCAGCTGTTCCTTTGCCTATTGCTCAGTGTCGTCTTGCTTGCTTATTCTTATTCAGTTATAAACGGAGCAGTTTGCAGCCAGATTATTCAACTGTCTTGAATTCAGAAATTAGTGATCAAGACAAGGAGCATCGAGTTCATGCCATTCTATCTTTCTCTTGCAACCTTCTTGATGAGTCTCTTTCTCTGCATACGGACTTCTCAGAGAAGATCCATTCATATGTGTTTGACGAATCTGTGAATGTCAAGCAGCTTGAGAGCATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

184

Amino Acids

21.16

Weight (kDa)

6.59

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AccB1I	GGYRCC	1 cut(s)	273
AccIII	TCCGGA	1 cut(s)	198
AclWI	GGATC	2 cut(s)	63, 490
AcsI	RAATTY	2 cut(s)	266, 385
AgsI	TTSAA	3 cut(s)	74, 375, 385
AluBI	AGCT	3 cut(s)	213, 290, 538
AluI	AGCT	3 cut(s)	213, 290, 538
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	2 cut(s)	63, 490
Aor13HI	TCCGGA	1 cut(s)	198
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	3 cut(s)	287, 361, 535
ApoI	RAATTY	2 cut(s)	266, 385
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	299, 373, 547
BccI	CCATC	1 cut(s)	285
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	3 cut(s)	288, 362, 536
BlsI	GCNGC	3 cut(s)	289, 363, 537
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	275
BmsI	GCATC	1 cut(s)	424
BsaWI	WCCGGW	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	147
BseAI	TCCGGA	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	2 cut(s)	323, 501
BseXI	GCAGC	3 cut(s)	299, 373, 547
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	468
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp13I	TCCGGA	1 cut(s)	198
Bsp143I	GATC	3 cut(s)	55, 400, 495
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	2 cut(s)	322, 500
BspEI	TCCGGA	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	275
BspMAI	CTGCAG	1 cut(s)	289
BspPI	GGATC	2 cut(s)	63, 490
BspT107I	GGYRCC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	147
BssMI	GATC	3 cut(s)	55, 400, 495
Bst4CI	ACNGT	5 cut(s)	7, 154, 167, 244, 379
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	309, 487
BstKTI	GATC	3 cut(s)	58, 403, 498
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	3 cut(s)	55, 400, 495
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	3 cut(s)	299, 373, 547
BstX2I	RGATCY	1 cut(s)	495
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	495
BsuRI	GGCC	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	35
CseI	GACGC	1 cut(s)	52
CviAII	CATG	1 cut(s)	425
CviJI	RGCY	5 cut(s)	37, 213, 290, 364, 538
CviKI_1	RGCY	5 cut(s)	37, 213, 290, 364, 538
DdeI	CTNAG	2 cut(s)	309, 487
DpnI	GATC	3 cut(s)	57, 402, 497
DpnII	GATC	3 cut(s)	55, 400, 495
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	385
FaeI	CATG	1 cut(s)	428
FaiI	YATR	8 cut(s)	138, 258, 345, 426, 477, 505, 507, 548
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	1 cut(s)	424
FauNDI	CATATG	1 cut(s)	505
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	3 cut(s)	288, 362, 536
Fsp4HI	GCNGC	3 cut(s)	288, 362, 536
GluI	GCNGC	3 cut(s)	288, 362, 536
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	1 cut(s)	199
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	1 cut(s)	428
HinfI	GANTC	2 cut(s)	461, 518
HpaII	CCGG	1 cut(s)	199
HphI	GGTGA	1 cut(s)	38
Hpy188I	TCNGA	4 cut(s)	60, 104, 391, 490
Hpy188III	TCNNGA	6 cut(s)	199, 220, 238, 382, 404, 455
Hpy99I	CGWCG	2 cut(s)	26, 68
HpyAV	CCTTC	3 cut(s)	25, 140, 461
HpyCH4III	ACNGT	5 cut(s)	7, 154, 167, 244, 379
HpyCH4V	TGCA	6 cut(s)	140, 260, 287, 361, 447, 475
HpyF3I	CTNAG	2 cut(s)	309, 487
Hsp92II	CATG	1 cut(s)	428
Kpn2I	TCCGGA	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	55, 400, 495
LmnI	GCTCC	2 cut(s)	351, 412
LpnPI	CCDG	6 cut(s)	51, 165, 212, 233, 251, 378
Lsp1109I	GCAGC	3 cut(s)	299, 373, 547
LweI	GCATC	1 cut(s)	424
MalI	GATC	3 cut(s)	57, 402, 497
MboI	GATC	3 cut(s)	55, 400, 495
MboII	GAAGA	3 cut(s)	86, 184, 505
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	6 cut(s)	29, 49, 225, 266, 385, 393
MlyI	GAGTC	1 cut(s)	470
MnlI	CCTC	1 cut(s)	206
MroI	TCCGGA	1 cut(s)	198
MseI	TTAA	2 cut(s)	48, 122
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	1 cut(s)	199
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	3 cut(s)	55, 400, 495
NlaIII	CATG	1 cut(s)	428
NlaIV	GGNNCC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	3 cut(s)	289, 363, 537
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PsiI	TTATAA	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	495
PvuII	CAGCTG	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	48, 122
SatI	GCNGC	3 cut(s)	288, 362, 536
Sau3AI	GATC	3 cut(s)	55, 400, 495
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	6 cut(s)	95, 128, 215, 292, 453, 540
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	6 cut(s)	29, 49, 225, 266, 385, 393
TaaI	ACNGT	5 cut(s)	7, 154, 167, 244, 379
TaqI	TCGA	1 cut(s)	418
TasI	AATT	6 cut(s)	29, 49, 225, 266, 385, 393
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	2 cut(s)	48, 122
Tru9I	TTAA	2 cut(s)	48, 122
TscAI	CASTG	1 cut(s)	317
TseI	GCWGC	3 cut(s)	287, 361, 535
TspDTI	ATGAA	3 cut(s)	7, 413, 492
TspGWI	ACGGA	2 cut(s)	364, 494
TspRI	CASTG	1 cut(s)	317
XapI	RAATTY	2 cut(s)	266, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.