Rw2G037490

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002435
Physical Location & Seq
Forward (+)
61828664 .. 61829743
1080 bp
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UTR
Exon/CDS
Intron
Rw2G037490.1

Sequence Viewer

Length: 309 bp
ATGTGCAGTGTTTTTCTCTTTGAAAACGTCATCTTTAGACAAAAAACAATCGTAAGCTTAAGATGGTATAAGGTAGCTGCAGAGAGTACTAGTACTGAAAGAGTGCAGCCGGCAGTGTCAACAATGAGGAGGATGGCAACAACAGAATCCTCCGGCAGCAGCGGTCGAGCTGTCGCAGATGATCAGGAGAAGAAGAAAGTGTTTTGGATGAGAGACCCAAAGACGGGGAACTGGATTCCAGAGAATCACTTTGAAGAGATTGATGCTGCAGAGCTCAGGGAGAAGCTCCTCAACAAGCACAAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

102

Amino Acids

11.81

Weight (kDa)

9.2

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3a PF03242 17 - 100 2e-18 Late embryogenesis abundant protein (LEA_3a subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 162
AfaI GTAC 2 cut(s) 88, 94
AfiI CCNNNNNNNGG 2 cut(s) 223, 224
AflII CTTAAG 1 cut(s) 58
AgsI TTSAA 2 cut(s) 23, 254
AhlI ACTAGT 1 cut(s) 89
AluBI AGCT 5 cut(s) 57, 77, 170, 274, 286
AluI AGCT 5 cut(s) 57, 77, 170, 274, 286
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 207
ApeKI GCWGC 5 cut(s) 77, 106, 156, 159, 266
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 5 cut(s) 64, 118, 168, 171, 253
BccI CCATC 2 cut(s) 57, 127
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 207
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 2 cut(s) 78, 267
BfrI CTTAAG 1 cut(s) 58
BisI GCNGC 5 cut(s) 78, 107, 157, 160, 267
BlsI GCNGC 5 cut(s) 79, 108, 158, 161, 268
BmcAI AGTACT 2 cut(s) 88, 94
BmsI GCATC 1 cut(s) 253
Bpu10I CCTNAGC 1 cut(s) 275
BsaI GGTCTC 1 cut(s) 207
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 224
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 236
BseGI GGATG 2 cut(s) 138, 213
BseLI CCNNNNNNNGG 2 cut(s) 223, 224
BseMII CTCAG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 2 cut(s) 142, 278
BseXI GCAGC 5 cut(s) 64, 118, 168, 171, 253
BsgI GTGCAG 2 cut(s) 25, 125
Bsh1285I CGRYCG 1 cut(s) 166
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 2 cut(s) 110, 153
BslI CCNNNNNNNGG 2 cut(s) 223, 224
BsmAI GTCTC 1 cut(s) 207
Bso31I GGTCTC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 288
BspMAI CTGCAG 2 cut(s) 82, 271
BspTI CTTAAG 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 109
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 109
BssMI GATC 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 249
BstAFI CTTAAG 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 275
BstF5I GGATG 2 cut(s) 138, 213
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 1 cut(s) 181
BstMCI CGRYCG 1 cut(s) 166
BstSFI CTRYAG 2 cut(s) 78, 267
BstV1I GCAGC 5 cut(s) 64, 118, 168, 171, 253
BtsCI GGATG 2 cut(s) 138, 213
BtsI GCAGTG 2 cut(s) 13, 120
BtsIMutI CAGTG 2 cut(s) 13, 120
Cac8I GCNNGC 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 109
Csp6I GTAC 2 cut(s) 87, 93
CviJI RGCY 6 cut(s) 57, 77, 109, 170, 274, 286
CviKI_1 RGCY 6 cut(s) 57, 77, 109, 170, 274, 286
CviQI GTAC 2 cut(s) 87, 93
DdeI CTNAG 1 cut(s) 275
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Ecl136II GAGCTC 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 276
Eco31I GGTCTC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 276
FaiI YATR 1 cut(s) 69
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 5 cut(s) 78, 107, 157, 160, 267
FokI GGATG 2 cut(s) 145, 220
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 5 cut(s) 78, 107, 157, 160, 267
FspBI CTAG 1 cut(s) 90
GluI GCNGC 5 cut(s) 78, 107, 157, 160, 267
HapII CCGG 2 cut(s) 110, 153
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 3 cut(s) 146, 235, 244
HpaII CCGG 2 cut(s) 110, 153
Hpy166II GTNNAC 1 cut(s) 120
Hpy188III TCNNGA 2 cut(s) 185, 239
Hpy8I GTNNAC 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 4 cut(s) 6, 80, 106, 269
HpyF3I CTNAG 1 cut(s) 275
HpySE526I ACGT 1 cut(s) 27
KroI GCCGGC 1 cut(s) 109
KroNI GCCGGC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 6 cut(s) 123, 166, 170, 217, 252, 262
Lsp1109I GCAGC 5 cut(s) 64, 118, 168, 171, 253
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 27
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 3 cut(s) 202, 205, 266
MhlI GDGCHC 1 cut(s) 276
MnlI CCTC 4 cut(s) 120, 123, 160, 299
MroNI GCCGGC 1 cut(s) 109
MseI TTAA 2 cut(s) 59, 307
MspA1I CMGCKG 1 cut(s) 162
MspCI CTTAAG 1 cut(s) 58
MspI CCGG 2 cut(s) 110, 153
NaeI GCCGGC 1 cut(s) 111
NdeII GATC 1 cut(s) 181
NgoMIV GCCGGC 1 cut(s) 109
PdiI GCCGGC 1 cut(s) 111
PfeI GAWTC 3 cut(s) 146, 235, 244
PkrI GCNGC 5 cut(s) 79, 108, 158, 161, 268
Psp124BI GAGCTC 1 cut(s) 276
PstI CTGCAG 2 cut(s) 82, 271
RsaI GTAC 2 cut(s) 88, 94
RsaNI GTAC 2 cut(s) 87, 93
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 2 cut(s) 59, 307
SatI GCNGC 5 cut(s) 78, 107, 157, 160, 267
Sau3AI GATC 1 cut(s) 181
ScaI AGTACT 2 cut(s) 88, 94
SduI GDGCHC 1 cut(s) 276
SetI ASST 8 cut(s) 30, 59, 75, 79, 172, 276, 288, 306
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 2 cut(s) 78, 267
SgeI CNNG 9 cut(s) 102, 122, 165, 179, 197, 237, 244, 251, 289
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
SpeI ACTAGT 1 cut(s) 89
SsiI CCGC 1 cut(s) 162
SspMI CTAG 1 cut(s) 90
SstI GAGCTC 1 cut(s) 276
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 166
TatI WGTACW 2 cut(s) 86, 92
TfiI GAWTC 3 cut(s) 146, 235, 244
Tru1I TTAA 2 cut(s) 59, 307
Tru9I TTAA 2 cut(s) 59, 307
TscAI CASTG 2 cut(s) 13, 120
TseI GCWGC 5 cut(s) 77, 106, 156, 159, 266
TspRI CASTG 2 cut(s) 13, 120
Vha464I CTTAAG 1 cut(s) 58
XspI CTAG 1 cut(s) 90
ZrmI AGTACT 2 cut(s) 88, 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.