Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000308.1

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Forward (+)

132546 .. 132836

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000308.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atggccaaggttcccatgaacccatttttccttctcagcaagagatggtataaggtagctgcagagagtactagtactgaaagagtgcagccggcagtgtcaacaatgaggaggatggcaacaacggaatcctccggcagcagcggtcgagctgtcgcagatgatcaggagaagaagaaagtgttttggatgagagacccaaagacggggaactggattccagagaatcactttgaagagattgatgctgcagagctcagggagaagctcctcaacaagcacaaggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

96

Amino Acids

11.05

Weight (kDa)

9.57

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	70, 76
AfiI	CCNNNNNNNGG	2 cut(s)	205, 206
AgsI	TTSAA	1 cut(s)	236
AhlI	ACTAGT	1 cut(s)	71
AluBI	AGCT	4 cut(s)	59, 152, 256, 268
AluI	AGCT	4 cut(s)	59, 152, 256, 268
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	5 cut(s)	59, 88, 138, 141, 248
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	5 cut(s)	46, 100, 150, 153, 235
BccI	CCATC	2 cut(s)	39, 109
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	189
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	60, 249
BisI	GCNGC	5 cut(s)	60, 89, 139, 142, 249
BlsI	GCNGC	5 cut(s)	61, 90, 140, 143, 250
BmcAI	AGTACT	2 cut(s)	70, 76
BmiI	GGNNCC	1 cut(s)	12
BmsI	GCATC	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 206
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	120, 195
BseLI	CCNNNNNNNGG	2 cut(s)	205, 206
BseMII	CTCAG	2 cut(s)	49, 271
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	2 cut(s)	124, 260
BseXI	GCAGC	5 cut(s)	46, 100, 150, 153, 235
BsgI	GTGCAG	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	92, 135
BslI	CCNNNNNNNGG	2 cut(s)	205, 206
BsmAI	GTCTC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	48, 270
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	2 cut(s)	64, 253
BspTNI	GGTCTC	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	35, 257
BstF5I	GGATG	2 cut(s)	120, 195
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	163
BstMCI	CGRYCG	1 cut(s)	148
BstSFI	CTRYAG	2 cut(s)	60, 249
BstV1I	GCAGC	5 cut(s)	46, 100, 150, 153, 235
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	120, 195
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	69, 75
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	6 cut(s)	5, 59, 91, 152, 256, 268
CviKI_1	RGCY	6 cut(s)	5, 59, 91, 152, 256, 268
CviQI	GTAC	2 cut(s)	69, 75
DdeI	CTNAG	2 cut(s)	35, 257
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	19
FaiI	YATR	2 cut(s)	17, 51
FatI	CATG	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	5 cut(s)	60, 89, 139, 142, 249
FokI	GGATG	2 cut(s)	127, 202
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	5 cut(s)	60, 89, 139, 142, 249
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	5 cut(s)	60, 89, 139, 142, 249
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	92, 135
Hin1II	CATG	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HinfI	GANTC	3 cut(s)	128, 217, 226
HpaII	CCGG	2 cut(s)	92, 135
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188III	TCNNGA	2 cut(s)	167, 221
Hpy8I	GTNNAC	1 cut(s)	102
HpyAV	CCTTC	1 cut(s)	41
HpyCH4V	TGCA	3 cut(s)	62, 88, 251
HpyF3I	CTNAG	2 cut(s)	35, 257
Hsp92II	CATG	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	6 cut(s)	105, 148, 152, 199, 234, 244
Lsp1109I	GCAGC	5 cut(s)	46, 100, 150, 153, 235
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	72
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	184, 187, 248
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	102, 105, 142, 281
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	289
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	2 cut(s)	92, 135
NaeI	GCCGGC	1 cut(s)	93
NdeII	GATC	1 cut(s)	163
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	12
PdiI	GCCGGC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	128, 217, 226
PkrI	GCNGC	5 cut(s)	61, 90, 140, 143, 250
Psp124BI	GAGCTC	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	12
PstI	CTGCAG	2 cut(s)	64, 253
RsaI	GTAC	2 cut(s)	70, 76
RsaNI	GTAC	2 cut(s)	69, 75
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	289
SatI	GCNGC	5 cut(s)	60, 89, 139, 142, 249
Sau3AI	GATC	1 cut(s)	163
ScaI	AGTACT	2 cut(s)	70, 76
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	7 cut(s)	12, 57, 61, 154, 258, 270, 288
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	2 cut(s)	60, 249
SpeI	ACTAGT	1 cut(s)	71
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	1 cut(s)	72
SstI	GAGCTC	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	6
TaqI	TCGA	1 cut(s)	148
TatI	WGTACW	2 cut(s)	68, 74
TfiI	GAWTC	3 cut(s)	128, 217, 226
Tru1I	TTAA	1 cut(s)	289
Tru9I	TTAA	1 cut(s)	289
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	5 cut(s)	59, 88, 138, 141, 248
TspDTI	ATGAA	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	102
XspI	CTAG	1 cut(s)	72
ZrmI	AGTACT	2 cut(s)	70, 76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.