RLG00000020134

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002435
Physical Location & Seq
Forward (+)
61458477 .. 61459833
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020134

Sequence Viewer

Length: 441 bp
ATGCAGCAGTTGCCAAAGAGTGGTCCGCCGCTCTCGTTGCAAGCTTCCCGCCGGCACCCTTCCAAAAATGATCGTCGTCGTCTTCCCCCTACTATTATACCAGTACCCAAGAAGCCACGACCACTTCCACCATTCCCCCACTGGTGCAACCCCGCCATGCCGCGTTGTCAGGCCACCAAACCTCCCAGCAACACCGCCAAGCCACGCTACCCCTCCAGGCCTCGTAACCACGCCCACTGTTCATTGTCCATGATATCTGACATTAATGGTGATGATCGGGATATTCTGGTTTTCCTCGACCTTGGAGAGAAAATTCTCAATGACTTCAAGGAGTCTCACTTGGGCTACTATACTGTAAGCAACTCAATTGCGAGCATTGGCGAGCAGTATAGCCGGTTTTTAATGGATGAGGATAATCTACATCACTTTGTAGTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.61

Weight (kDa)

9.62

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 54
AccB7I CCANNNNNTGG 1 cut(s) 20
AccBSI CCGCTC 1 cut(s) 31
AccII CGCG 1 cut(s) 163
AciI CCGC 6 cut(s) 26, 29, 49, 153, 161, 195
AcsI RAATTY 1 cut(s) 312
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 339
AoxI GGCC 2 cut(s) 171, 218
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 312
AseI ATTAAT 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 339
BisI GCNGC 3 cut(s) 5, 29, 161
BlsI GCNGC 3 cut(s) 6, 30, 162
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 301
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse118I RCCGGY 2 cut(s) 51, 393
Bse1I ACTGG 2 cut(s) 101, 146
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 20
BseNI ACTGG 2 cut(s) 101, 146
BseXI GCAGC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 163
BshFI GGCC 2 cut(s) 173, 220
BshNI GGYRCC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 52, 394
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 339
BsnI GGCC 2 cut(s) 173, 220
Bsp143I GATC 2 cut(s) 70, 274
BspACI CCGC 6 cut(s) 26, 29, 49, 153, 161, 195
BspANI GGCC 2 cut(s) 173, 220
BspFNI CGCG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 54
BsrBI CCGCTC 1 cut(s) 31
BsrFI RCCGGY 2 cut(s) 51, 393
BsrI ACTGG 2 cut(s) 101, 146
BssAI RCCGGY 2 cut(s) 51, 393
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 2 cut(s) 70, 274
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 239, 355
BstAPI GCANNNNNTGC 1 cut(s) 10
BstC8I GCNNGC 4 cut(s) 42, 53, 373, 383
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 1 cut(s) 163
BstKTI GATC 2 cut(s) 73, 277
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 2 cut(s) 70, 274
BstMWI GCNNNNNNNGC 2 cut(s) 10, 37
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 215
BstUI CGCG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 74
BsuRI GGCC 2 cut(s) 173, 220
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 139, 235
Cac8I GCNNGC 4 cut(s) 42, 53, 373, 383
Cfr10I RCCGGY 2 cut(s) 51, 393
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 104
CviAII CATG 2 cut(s) 157, 250
CviJI RGCY 7 cut(s) 44, 115, 173, 202, 220, 345, 393
CviKI_1 RGCY 7 cut(s) 44, 115, 173, 202, 220, 345, 393
CviQI GTAC 1 cut(s) 104
DpnI GATC 2 cut(s) 72, 276
DpnII GATC 2 cut(s) 70, 274
EciI GGCGGA 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 301
Eco147I AGGCCT 1 cut(s) 220
Eco32I GATATC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 215
EcoRV GATATC 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 2 cut(s) 160, 253
FaiI YATR 6 cut(s) 98, 158, 251, 351, 390, 439
FatI CATG 2 cut(s) 156, 249
FauI CCCGC 2 cut(s) 56, 160
Fnu4HI GCNGC 3 cut(s) 5, 29, 161
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 3 cut(s) 5, 29, 161
GluI GCNGC 3 cut(s) 5, 29, 161
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 199
HaeIII GGCC 2 cut(s) 173, 220
HapII CCGG 2 cut(s) 52, 394
Hin1II CATG 2 cut(s) 160, 253
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 1 cut(s) 332
HpaII CCGG 2 cut(s) 52, 394
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 278
Hpy99I CGWCG 2 cut(s) 78, 81
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 2 cut(s) 239, 355
HpyCH4V TGCA 4 cut(s) 4, 40, 147, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 37
Hsp92II CATG 2 cut(s) 160, 253
KroI GCCGGC 1 cut(s) 51
KroNI GCCGGC 1 cut(s) 53
Kzo9I GATC 2 cut(s) 70, 274
LpnPI CCDG 9 cut(s) 65, 114, 127, 155, 199, 202, 229, 272, 407
Lsp1109I GCAGC 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 72, 276
MbiI CCGCTC 1 cut(s) 31
MboI GATC 2 cut(s) 70, 274
MboII GAAGA 1 cut(s) 74
MfeI CAATTG 1 cut(s) 366
MluCI AATT 2 cut(s) 312, 366
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 5 cut(s) 192, 223, 231, 305, 403
MroNI GCCGGC 1 cut(s) 51
MseI TTAA 2 cut(s) 264, 401
MspI CCGG 2 cut(s) 52, 394
MspR9I CCNGG 1 cut(s) 217
MunI CAATTG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 10, 37
NaeI GCCGGC 1 cut(s) 53
NdeII GATC 2 cut(s) 70, 274
NgoMIV GCCGGC 1 cut(s) 51
NlaIII CATG 2 cut(s) 160, 253
NlaIV GGNNCC 1 cut(s) 56
PceI AGGCCT 1 cut(s) 220
PdiI GCCGGC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 20
PkrI GCNGC 3 cut(s) 6, 30, 162
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PshBI ATTAAT 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 23
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 264, 401
SatI GCNGC 3 cut(s) 5, 29, 161
Sau3AI GATC 2 cut(s) 70, 274
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 217
SetI ASST 3 cut(s) 46, 184, 303
SinI GGWCC 1 cut(s) 23
Sse9I AATT 2 cut(s) 312, 366
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 6 cut(s) 26, 29, 49, 153, 161, 195
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 239, 355
TaqI TCGA 1 cut(s) 297
TasI AATT 2 cut(s) 312, 366
TauI GCSGC 2 cut(s) 31, 163
Tru1I TTAA 2 cut(s) 264, 401
Tru9I TTAA 2 cut(s) 264, 401
TscAI CASTG 2 cut(s) 146, 242
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 2 cut(s) 146, 242
Van91I CCANNNNNTGG 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 23
VspI ATTAAT 1 cut(s) 264
XapI RAATTY 1 cut(s) 312
XcmI CCANNNNNNNNNTGG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.